SNP Profiles of MO 20   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCACGGACAAAGAGACAAAGAGAGAGAC
1._RUQ_1566
CCACGGACAAAGAGACAAAGAGAGAGAC
2._MO_20_Fld#_171_Plt#_1
CCACGGACAAAGAGACAAAGAGAGAGAC
3._RUQ_1566
____________AG______________
4._MO_20_Fld#_74_Plt#_1
ACACAAAAAGAGAACCAAGGAGAAAACC
5._RUQ_1566
__________CT________AG______
6._GC-01-121-6-18
CCACGGACTTCTAGGTAACTAGCTCTGT
7._GC-08-167-4-10
CCACGGACTTCTAGGTAACTAGCTCTGT
8._GC-08-167-4-10
CCACGGACTTCTAGGTAACTAGCTCTGT
9._GC-01-121-6-18
CCACGGACTTCTAGGTAACTAGCTCTGT
10._GC-01-121-6-18
CCACGGACTTCTAGGTAACTAGCTCTGT
11._GC-01-121-6-18
CCACGGACTTCTAGGTAACTAGCTCTGT
12._GC-01-121-6-18
CCACGGACTTCTAGGTAACTAGCTCTGT
13._GC-01-121-6-18
CCACGGACTTCTAGGTAACTAGCTCTGT
14._GC-08-167-4-10
CCACGGACTTCTAGGTAACTAGCTCTGT
15._GC-08-167-4-10
CCACGGACTTCTAGGTAACTAGCTCTGT
16._MO_20
__________CTAG__AA__________
17._MO_20
__________CTAG__AA__________
18._MO_20
__________CTAG__AA__________
19._MO_20
__________CTAG__AA__________
20._MO_20
__________CTAG__AA__________
21._MO_20
__________CTAG__AA__________
22._MO_20
__________CTAG__AA__________
23._MO_20
__________CTAG__AA__________
24._MO_20
__________CTAG__AA__________
25._MO_20
__________CTAG__AA__________
26._MO_20
__________CTAG__AA__________
27._RUQ_1566
______________GG____GG______
28._GC-01-121-6-18
CCAAAGCCTTCCGGGGAACCGGTTCCTT
29._MO_20
__________CCGG__AA__________
30._MO_20
__________CCGG__TT__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGACAGAGACAGAGAGAAGGAAACAGAG
1._RUQ_1566
AGACAGAGACAGAGAGAAGGAAACAGAG
2._MO_20_Fld#_171_Plt#_1
AGACAGAGACAGAGAGAAGGAAACAGAG
3._RUQ_1566
__GT______________CC________
4._MO_20_Fld#_74_Plt#_1
GGAAGGAAAAGGAAAGAGCCAAACAGAG
5._RUQ_1566
______________CT__GG____CT__
6._GC-01-121-6-18
CTGTCTTTACAGCT__TTCCAAGTCTCT
7._GC-08-167-4-10
CTGTCTTTACAGCTCTTTCCAAGTCTCT
8._GC-08-167-4-10
CTGTCTTTACAGCTCTTTCCAAGTCTCT
9._GC-01-121-6-18
CTGTCTTTACAGCTCTTTCCAAGTCTCT
10._GC-01-121-6-18
CTGTCTTTACAGCTCTTTCCAAGTCTCT
11._GC-01-121-6-18
CTGTCTTTACAGCTCTTTCCAAGTCTCT
12._GC-01-121-6-18
CTGTCTTTACAGCTCTTTCCAAGTCTCT
13._GC-01-121-6-18
CTGTCTTTACAGCTCTTTCCAAGTCTCT
14._GC-08-167-4-10
CTGTCTTTACAGCTCTTTCCAAGTCTCT
15._GC-08-167-4-10
CTGTCTTTACAGCTCTTTCCAAGTCTCT
16._MO_20
__GTCT__AC__CT__TTCCAAGTCTCT
17._MO_20
__GTCT__AC__CT__TTCCAAGTCTCT
18._MO_20
__GTCT__AC__CT__TTCCAAGTCTCT
19._MO_20
__GTCT__AC__CT__TTCCAAGTCTCT
20._MO_20
__GTCT__AC__CT__TTCCAAGTCTCT
21._MO_20
__GTCT__AC__CT__TTCCAAGTCTCT
22._MO_20
__GTCT__AC__CT__TTCCAAGTCTCT
23._MO_20
__GTCT__AC__CT__TTCCAAGTCTCT
24._MO_20
__GTCT__AC__CT__TTCCAAGTCTCT
25._MO_20
__GTCT__AC__CT__TTCCAAGTCTCT
26._MO_20
__GTCT__AC__CT__TTCCAAGTCTCT
27._RUQ_1566
______________CCTT__________
28._GC-01-121-6-18
TTTTTTTT__GGTTCCCCCGGGTTTTCC
29._MO_20
__TTTT______TT__CCCGGGTTTTCC
30._MO_20
__TTTT__CC__CC__TTCCGGGGTTCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
ATGGACGGAGGGAGCGACTTATAGAGAA
1._RUQ_1566
ATGGACGGAGGGAGCGACTTATAGAGAA
2._MO_20_Fld#_171_Plt#_1
ATGGACGGAGGGAGCGACTTATAGAGAA
3._RUQ_1566
________AG____________AG____
4._MO_20_Fld#_74_Plt#_1
ATAGAAGGAAGGAGGGCCATATGGGGAT
5._RUQ_1566
__GGACGGAG______________AGAA
6._GC-01-121-6-18
ATGGACCCAGGGCTCGGTAAATAGAGAA
7._GC-08-167-4-10
ATGGACCCAGGGCTCGGTAAATAGAGAA
8._GC-08-167-4-10
ATGGACCCAGGGCTCGGTAAATAGAGAA
9._GC-01-121-6-18
ATGGACCCAGGGCTCGGTAAATAGAGAA
10._GC-01-121-6-18
ATGGACCCAGGGCTCGGTAAATAGAGAA
11._GC-01-121-6-18
ATGGACCCAGGGCTCGGTAAATAGAGAA
12._GC-01-121-6-18
ATGGACCCAGGGCTCGGTAAATAGAGAA
13._GC-01-121-6-18
ATGGACCCAGGGCTCGGTAAATAGAGAA
14._GC-08-167-4-10
ATGGACCCAGGGCTCGGTAAATAGAGAA
15._GC-08-167-4-10
ATGGACCCAGGGCTCGGTAAATAGAGAA
16._MO_20
____ACCCAG__CTCG____AT____AA
17._MO_20
____ACCCAG__CTCG____AT____AA
18._MO_20
____ACCCAG__CTCG____AT____AA
19._MO_20
____ACCCAG__CTCG____AT____AA
20._MO_20
____ACCCAG__CTCG____AT____AA
21._MO_20
____ACCCAG__CTCG____AT____AA
22._MO_20
____ACCCAG__CTCG____AT____AA
23._MO_20
____ACCCAG__CTCG____AT____AA
24._MO_20
____ACCCAG__CTCG____AT____AA
25._MO_20
____ACCCAG__CTCG____AT____AA
26._MO_20
____ACCCAG__CTCG____AT____AA
27._RUQ_1566
______CC____________________
28._GC-01-121-6-18
AAGGAACCGGGGCCGGGGAATTGGGGAA
29._MO_20
____AACCGG__CCGG____TT____AA
30._MO_20
____CCCCAA__CCCC____AA____TT
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGAAGGGGATCGAGACACAGACAGCGCC
1._RUQ_1566
GGAAGGGGATCGAGACACAGACAGCGCC
2._MO_20_Fld#_171_Plt#_1
GGAAGGGGATCGAGACACAGACAGCGCC
3._RUQ_1566
________________AC______CGCC
4._MO_20_Fld#_74_Plt#_1
AGAGGGGGAACGAACCCCGGAAAACCCC
5._RUQ_1566
CC________CC____________CGCC
6._GC-01-121-6-18
CCAAGGGGATCG__ACACAGGTAGCGCC
7._GC-08-167-4-10
CCAAGGGGATCG__ACACAGGTAGCGCC
8._GC-08-167-4-10
CCAAGGGGATCG__ACACAGGTAGCGCC
9._GC-01-121-6-18
CCAAGGGGATCG__ACACAGGTAGCGCC
10._GC-01-121-6-18
CCAAGGGGATCG__ACACAGGTAGCGCC
11._GC-01-121-6-18
CCAAGGGGATCG__ACACAGGTAGCGCC
12._GC-01-121-6-18
CCAAGGGGATCG__ACACAGGTAGCGCC
13._GC-01-121-6-18
CCAAGGGGATCG__ACACAGGTAGCGCC
14._GC-08-167-4-10
CCAAGGGGATCG__ACACAGGTAGCGCC
15._GC-08-167-4-10
CCAAGGGGATCG__ACACAGGTAGCGCC
16._MO_20
______GG________AC__GT__CGCC
17._MO_20
______GG________AC__GT__CGCC
18._MO_20
______GG________AC__GT__CGCC
19._MO_20
______GG________AC__GT__CGCC
20._MO_20
______GG________AC__GT__CGCC
21._MO_20
______GG________AC__GT__CGCC
22._MO_20
______GG________AC__GT__CGCC
23._MO_20
______GG________AC__GT__CGCC
24._MO_20
______GG________AC__GT__CGCC
25._MO_20
______GG________AC__GT__CGCC
26._MO_20
______GG________AC__GT__CGCC
27._RUQ_1566
________________AC__GG____CC
28._GC-01-121-6-18
TTGGGGGGTTCC__CCAAGGGGGGCCAC
29._MO_20
______GG________AA__GG__CCAC
30._MO_20
______AG________AA__GG__GGCC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGAGAAAAAGCCAGAGAACCAACCCGAA
1._RUQ_1566
GGAGAAAAAGCCAGAGAACCAACCCGAA
2._MO_20_Fld#_171_Plt#_1
GGAGAAAAAGCCAGAGAACCAACCCGAA
3._RUQ_1566
__CT______GGAG________CCCT__
4._MO_20_Fld#_74_Plt#_1
GGAGAAGGAACCGGAAACACAACCCCGG
5._RUQ_1566
__CT____________TT________AA
6._GC-01-121-6-18
CCCTTTAGAGGGAGCTTTGGTTCCCGAA
7._GC-08-167-4-10
CCCTTTAGAGGGAG__TTGGTTCCCGAA
8._GC-08-167-4-10
CCCTTTAGAGGGAG__TTGGTTCCCGAA
9._GC-01-121-6-18
CCCTTTAGAGGGAGCTTTGGTTCCCGAA
10._GC-01-121-6-18
CCCTTTAGAGGGAGCTTTGGTTCCCGAA
11._GC-01-121-6-18
CCCTTTAGAGGGAGCTTTGGTTCCCGAA
12._GC-01-121-6-18
CCCTTTAGAGGGAGCTTTGGTTCCCGAA
13._GC-01-121-6-18
CCCTTTAGAGGGAGCTTTGGTTCCCGAA
14._GC-08-167-4-10
CCCTTTAGAGGGAGCTTTGGTTCCCGAA
15._GC-08-167-4-10
CCCTTTAGAGGGAGCTTTGGTTCCCGAA
16._MO_20
____TT____GG________________
17._MO_20
____TT____GG________________
18._MO_20
____TT____GG________________
19._MO_20
____TT____GG________________
20._MO_20
____TT____GG________________
21._MO_20
____TT____GG________________
22._MO_20
____TT____GG________________
23._MO_20
____TT____GG________________
24._MO_20
____TT____GG________________
25._MO_20
____TT____GG________________
26._MO_20
____TT____GG________________
27._RUQ_1566
______________________CC____
28._GC-01-121-6-18
CCCCCCAAAAGGAATTGGTTTTAAGG__
29._MO_20
____CC____GG________________
30._MO_20
____CC____GT________________
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CGAGGGAGCCAGCGAGATAGAAX_XX_XX_X
1._RUQ_1566
CGAGGGAGCCAGCGAGATAGAAX_XX_XX_X
2._MO_20_Fld#_171_Plt#_1
CGAGGGAGCCAGCGAGATAGAAX_XX_XX_X
3._RUQ_1566
CG____AG____________AAX_XX_XX_X
4._MO_20_Fld#_74_Plt#_1
CCGGGGAGCCAAGGAGAAAAAGX_XX_XX_X
5._RUQ_1566
CGCT______________CT__X_XX_XX_X
6._GC-01-121-6-18
CGCTCCAGCCCTCGCTATCTAAX_XX_XX_X
7._GC-08-167-4-10
CGCTCCAGCCCTCGCTATCTAAX_XX_XX_X
8._GC-08-167-4-10
CGCTCCAGCCCTCGCTATCTAAX_XX_XX_X
9._GC-01-121-6-18
CGCTCCAGCCCTCGCTATCTAAX_XX_XX_X
10._GC-01-121-6-18
CGCTCCAGCCCTCGCTATCTAAX_XX_XX_X
11._GC-01-121-6-18
CGCTCCAGCCCTCGCTATCTAAX_XX_XX_X
12._GC-01-121-6-18
CGCTCCAGCCCTCGCTATCTAAX_XX_XX_X
13._GC-01-121-6-18
CGCTCCAGCCCTCGCTATCTAAX_XX_XX_X
14._GC-08-167-4-10
CGCTCCAGCCCTCGCTATCTAAX_XX_XX_X
15._GC-08-167-4-10
CGCTCCAGCCCTCGCTATCTAAX_XX_XX_X
16._MO_20
CGCT______CTCG__ATCTAAX_XX_XX_X
17._MO_20
CGCT______CTCG__ATCTAAX_XX_XX_X
18._MO_20
CGCT______CTCG__ATCTAAX_XX_XX_X
19._MO_20
CGCT______CTCG__ATCTAAX_XX_XX_X
20._MO_20
CGCT______CTCG__ATCTAAX_XX_XX_X
21._MO_20
CGCT______CTCG__ATCTAAX_XX_XX_X
22._MO_20
CGCT______CTCG__ATCTAAX_XX_XX_X
23._MO_20
CGCT______CTCG__ATCTAAX_XX_XX_X
24._MO_20
CGCT______CTCG__ATCTAAX_XX_XX_X
25._MO_20
CGCT______CTCG__ATCTAAX_XX_XX_X
26._MO_20
CGCT______CTCG__ATCTAAX_XX_XX_X
27._RUQ_1566
________CC____________X_XX_XX_X
28._GC-01-121-6-18
GGCCCCGGCCCCGGCCAACTGGX_XX_XX_X
29._MO_20
GGCC______CCGG__AACTGGX_XX_XX_X
30._MO_20
CCTT______TTGG__TTTTAAX_XX_XX_X

Input profile: MO_20 MITC-000675

 
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USDA-SHRS, United States of America
 Mars, 2018

1._MO_20 RUQ_1566

identical
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._MO_20 MO_20_Fld#_171_Plt#_1

identical
81 shared markers

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USDA-TARS, United States of America
Location: Field: 171, Tree: 1
 Mars, 2018

3._MO_20 RUQ_1566

68.8 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Ame
0.357 Cri
0.158 Sca
0.452

4._MO_20 MO_20_Fld#_74_Plt#_1

64.8 %
81 shared markers

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USDA-TARS, United States of America
Location: Field: 74, Tree: 1
 Mars, 2018

5._MO_20 RUQ_1566

59.5 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

6._MO_20 GC-01-121-6-18

53.8 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

7._MO_20 GC-08-167-4-10

53.8 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._MO_20 GC-08-167-4-10

53.8 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._MO_20 GC-01-121-6-18

53.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._MO_20 GC-01-121-6-18

53.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

11._MO_20 GC-01-121-6-18

53.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

12._MO_20 GC-01-121-6-18

53.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._MO_20 GC-01-121-6-18

53.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

14._MO_20 GC-08-167-4-10

53.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._MO_20 GC-08-167-4-10

53.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

16._MO_20

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 9
 Dapeng Zhang, 2016

17._MO_20

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 11
 Dapeng Zhang, 2016

18._MO_20

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 1 > FP
 Dapeng Zhang, 2016

19._MO_20

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 10 > F
 Dapeng Zhang, 2016

20._MO_20

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 2 > FP
 Dapeng Zhang, 2016

21._MO_20

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 4 > FP
 Dapeng Zhang, 2016

22._MO_20

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 1
 Dapeng Zhang, 2016

23._MO_20

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 2
 Dapeng Zhang, 2016

24._MO_20

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 3
 Dapeng Zhang, 2016

25._MO_20

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 4
 Dapeng Zhang, 2016

26._MO_20

50 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B D238 T2
 Dapeng Zhang, 2016

27._MO_20 RUQ_1566

45 %
10 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._MO_20 GC-01-121-6-18

30.1 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

29._MO_20

27.3 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 13
 Dapeng Zhang, 2016

30._MO_20

23.5 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 809
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998