SNP Profiles of SC 1 [UNK]   View Data

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 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCACAACCAAAGGGCCAAGGGGAAAACC
1._EET_272_[ECU]___
CCACAACCAAAGGGCCAAGGGGAAAACC
2._EET_272_[ECU]___
ACCCAGCCAAGGAGCCAAGGGGAAAAAC
3._EET_272_[ECU]___
____________GG______________
4._EET_272_[ECU]___
CCAC__CCTTCTGGGGAACCGGTTTTGG
5._EET_272_[ECU]___
CCACAACCTTCTGGGGAACCGGTTTTGG
6._EET_272_[ECU]___
CCACAACCTTCTGGGGAACCGGTTTTGG
7._EET_272_[ECU]___
CCACAACCTTCTGGGGAACCGGTTTTGG
8._EET_272_[ECU]___
CCACAACCTTCTGGGGAACCGGTTTTGG
9._EET_272_[ECU]___
CCACAACCTTCTGGGGAACCGGTTTTGG
10._EET_272_[ECU]___
CCACAACCTTCTGGGGAACCGGTTTTGG
11._EET_272_[ECU]___
CCACAACCTTCTGGGGAACCGGTTTTGG
12._EET_272_[ECU]___
__________CTGG__AA__________
13._EET_272_[ECU]___
__________CTGG__AA__________
14._EET_272_[ECU]___
__________CTGG__AA__________
15._EET_272_[ECU]___
__________CTGG__AA__________
16._EET_272_[ECU]___
__________CTGG__AA__________
17._EET_272_[ECU]___
__________CTGG__AA__________
18._EET_272_[ECU]___
__________CTGG__AA__________
19._EET_272_[ECU]___
__________CTGG__AA__________
20._EET_272_[ECU]___
__________CT__GG____GG______
21._EET_272_[ECU]___
__________CT____AA__________
22._EET_272_[ECU]___
ACCCAGCCTTCCAGGGAACCGGTTTTGT
23._EET_272_[ECU]___
__________CCAG__AA__________
24._EET_272_[ECU]___
ACCCAGCCTTCCAGGGAACCGGTTTTGT
25._EET_272_[ECU]___
__________CCAG__AA__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAAAAGGAAGGACAAGGAACCAG
1._EET_272_[ECU]___
AAAAAAAAAAGGAAGGACAAGGAACCAG
2._EET_272_[ECU]___
AAAAAGAAACGGAAGGCCGGCCGGCCGG
3._EET_272_[ECU]___
__TT____________AC__CC______
4._EET_272_[ECU]___
TTTTTT__AAGGTTCCACTTCCAAGGCT
5._EET_272_[ECU]___
TTTTTTTTAAGGTTCCACTTCCAAGGCT
6._EET_272_[ECU]___
TTTTTTTTAAGGTTCCACTTCCAAGGCT
7._EET_272_[ECU]___
TTTTTTTTAAGGTTCCACTTCCAAGGCT
8._EET_272_[ECU]___
TTTTTTTTAAGGTTCCACTTCCAAGGCT
9._EET_272_[ECU]___
TTTTTTTTAAGGTTCCACTTCCAAGGCT
10._EET_272_[ECU]___
TTTTTTTTAAGGTTCCACTTCCAAGGCT
11._EET_272_[ECU]___
TTTTTTTTAAGGTTCCACTTCCAAGGCT
12._EET_272_[ECU]___
__TTTT__AA__TT__ACTTCCAAGGCT
13._EET_272_[ECU]___
__TTTT__AA__TT__ACTTCCAAGGCT
14._EET_272_[ECU]___
__TTTT__AA__TT__ACTTCCAAGGCT
15._EET_272_[ECU]___
__TTTT__AA__TT__ACTTCCAAGGCT
16._EET_272_[ECU]___
__TTTT__AA__TT__ACTTCCAAGGCT
17._EET_272_[ECU]___
__TTTT__AA__TT__ACTTCCAAGGCT
18._EET_272_[ECU]___
__TTTT__AA__TT__ACTTCCAAGGCT
19._EET_272_[ECU]___
__TTTT__AA__TT__ACTTCCAAGGCT
20._EET_272_[ECU]___
__TT__TT______CCACTTCCAAGGCT
21._EET_272_[ECU]___
__TT____AA__TT__ACTT__AA__CT
22._EET_272_[ECU]___
TTTTCTTTACGGTTCCCCCCGGGGGGCC
23._EET_272_[ECU]___
__TTCT__AC__TT__CCCCGGGGGGCC
24._EET_272_[ECU]___
TTTTCTTTACGGTTCCCCCCGGGGGGCC
25._EET_272_[ECU]___
__TTCT__AC__TT__CCCCGGGGGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGATGGAAGGAAGGAGGGCCTTTTAGGG
1._EET_272_[ECU]___
GGATGGAAGGAAGGAGGGCCTTTTAGGG
2._EET_272_[ECU]___
AGTTGGACGGAGGGGGGGCCTTATGGGG
3._EET_272_[ECU]___
__________AA____________AG__
4._EET_272_[ECU]___
CCATGGAACCAAGGCTGGGGAATTAGGG
5._EET_272_[ECU]___
CCATGGAACCAAGGCTGGGGAATTAGGG
6._EET_272_[ECU]___
CCATGGAACCAAGGCTGGGGAATTAGGG
7._EET_272_[ECU]___
CCATGGAACCAAGGCTGGGGAATTAGGG
8._EET_272_[ECU]___
CCATGGAACCAAGGCTGGGGAATTAGGG
9._EET_272_[ECU]___
CCATGGAACCAAGGCTGGGGAATTAGGG
10._EET_272_[ECU]___
CCATGGAACCAAGGCTGGGGAATTAGGG
11._EET_272_[ECU]___
CCATGGAACCAAGGCTGGGGAATTAGGG
12._EET_272_[ECU]___
CC____AACCAA__CTGG____TT____
13._EET_272_[ECU]___
CC____AACCAA__CTGG____TT____
14._EET_272_[ECU]___
CC____AACCAA__CTGG____TT____
15._EET_272_[ECU]___
CC____AACCAA__CTGG____TT____
16._EET_272_[ECU]___
CC____AACCAA__CTGG____TT____
17._EET_272_[ECU]___
CC____AACCAA__CTGG____TT____
18._EET_272_[ECU]___
CC____AACCAA__CTGG____TT____
19._EET_272_[ECU]___
CC____AACCAA__CTGG____TT____
20._EET_272_[ECU]___
____GGAACCAA__CT________AGGG
21._EET_272_[ECU]___
CT____AACCAA__CTGG__________
22._EET_272_[ECU]___
CTAAGGAACCAGGGCCGGGGAAATGGGG
23._EET_272_[ECU]___
CT____AACCAG__CCGG____AT____
24._EET_272_[ECU]___
CTAAGG__CCAGGGCCGGGGAAATGGGG
25._EET_272_[ECU]___
CT______CCAG__CCGG____AT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAGGGGGGGAAGGAAAACCGGACGGGG
1._EET_272_[ECU]___
AAAGGGGGGGAAGGAAAACCGGACGGGG
2._EET_272_[ECU]___
AAAAGGGGGGTTGGGGCCACAAACAGCG
3._EET_272_[ECU]___
__________________AC______GG
4._EET_272_[ECU]___
AACTGGGGGGAACC__AACCGGGTGGGG
5._EET_272_[ECU]___
AACTGGGGGGAACC__AACCGGGTGGGG
6._EET_272_[ECU]___
AACTGGGGGGAACC__AACCGGGTGGGG
7._EET_272_[ECU]___
AACTGGGGGGAACC__AACCGGGTGGGG
8._EET_272_[ECU]___
AACTGGGGGGAACC__AACCGGGTGGGG
9._EET_272_[ECU]___
AACTGGGGGGAACC__AACCGGGTGGGG
10._EET_272_[ECU]___
AACTGGGGGGAACC__AACCGGGTGGGG
11._EET_272_[ECU]___
AACTGGGGGGAACC__AACCGGGTGGGG
12._EET_272_[ECU]___
AA______GG________CC__GT__GG
13._EET_272_[ECU]___
AA______GG________CC__GT__GG
14._EET_272_[ECU]___
AA______GG________CC__GT__GG
15._EET_272_[ECU]___
AA______GG________CC__GT__GG
16._EET_272_[ECU]___
AA______GG________CC__GT__GG
17._EET_272_[ECU]___
AA______GG________CC__GT__GG
18._EET_272_[ECU]___
AA______GG________CC__GT__GG
19._EET_272_[ECU]___
AA______GG________CC__GT__GG
20._EET_272_[ECU]___
AA__________CC____CC__GT__GG
21._EET_272_[ECU]___
________AG____________GT____
22._EET_272_[ECU]___
AATTGGGGGGTTCC__CCACAAGTAGCG
23._EET_272_[ECU]___
AA______GG________AC__GT__CG
24._EET_272_[ECU]___
AATTGGGGGGTTCC__CCACAAGTAGCG
25._EET_272_[ECU]___
AA______GG________AC__GT__CG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AAGGGGAGAAAACCGGAAAACCAAACCC
1._EET_272_[ECU]___
AAGGGGAGAAAACCGGAAAACCAAACCC
2._EET_272_[ECU]___
CCGGAGAAAGAACCAGAAAACCAAAACG
3._EET_272_[ECU]___
____CC______GGGG________ACTT
4._EET_272_[ECU]___
AACCCCCTAAAAGGGGTTTTGGTTACGG
5._EET_272_[ECU]___
AACCCCCTAAAAGGGGTTTTGGTTACGG
6._EET_272_[ECU]___
AACCCCCTAAAAGGGGTTTTGGTTACGG
7._EET_272_[ECU]___
AACCCCCTAAAAGGGGTTTTGGTTACGG
8._EET_272_[ECU]___
AACCCCCTAAAAGGGGTTTTGGTTACGG
9._EET_272_[ECU]___
AACCCCCTAAAAGGGGTTTTGGTTACGG
10._EET_272_[ECU]___
AACCCCCTAAAAGGGGTTTTGGTTACGG
11._EET_272_[ECU]___
AACCCCCTAAAAGGGGTTTTGGTTACGG
12._EET_272_[ECU]___
AA____CT____GG______________
13._EET_272_[ECU]___
AA____CT____GG______________
14._EET_272_[ECU]___
AA____CT____GG______________
15._EET_272_[ECU]___
AA____CT____GG______________
16._EET_272_[ECU]___
AA____CT____GG______________
17._EET_272_[ECU]___
AA____CT____GG______________
18._EET_272_[ECU]___
AA____CT____GG______________
19._EET_272_[ECU]___
AA____CT____GG______________
20._EET_272_[ECU]___
AA__CCCT____GGGGTT____TTAC__
21._EET_272_[ECU]___
AA____CT____GG______________
22._EET_272_[ECU]___
CCCCCTTTAAAAGGAGTTTTGGTTAACG
23._EET_272_[ECU]___
CC____TT____GG______________
24._EET_272_[ECU]___
CCCCCTTTAAAAGGAGTTTTGGTTAACG
25._EET_272_[ECU]___
CC____TT____GG______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
1._EET_272_[ECU]___
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
2._EET_272_[ECU]___
GGCCGGGGGGCCAGCCGGAAAGAGX_XX_X
3._EET_272_[ECU]___
__CC____GG____________AGX_XX_X
4._EET_272_[ECU]___
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
5._EET_272_[ECU]___
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
6._EET_272_[ECU]___
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
7._EET_272_[ECU]___
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
8._EET_272_[ECU]___
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
9._EET_272_[ECU]___
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
10._EET_272_[ECU]___
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
11._EET_272_[ECU]___
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
12._EET_272_[ECU]___
__CCCT______CTGG__AACTAGX_XX_X
13._EET_272_[ECU]___
__CCCT______CTGG__AACTAGX_XX_X
14._EET_272_[ECU]___
__CCCT______CTGG__AACTAGX_XX_X
15._EET_272_[ECU]___
__CCCT______CTGG__AACTAGX_XX_X
16._EET_272_[ECU]___
__CCCT______CTGG__AACTAGX_XX_X
17._EET_272_[ECU]___
__CCCT______CTGG__AACTAGX_XX_X
18._EET_272_[ECU]___
__CCCT______CTGG__AACTAGX_XX_X
19._EET_272_[ECU]___
__CCCT______CTGG__AACTAGX_XX_X
20._EET_272_[ECU]___
__CCTT____CC__________AGX_XX_X
21._EET_272_[ECU]___
____CT______CTGG__AACTAGX_XX_X
22._EET_272_[ECU]___
__GGCCCCGGCCCTCCCCAACTAGX_XX_X
23._EET_272_[ECU]___
__GGCC______CTCC__AACTAGX_XX_X
24._EET_272_[ECU]___
__GGCCCCGGCCCTCCCCAACTAGX_XX_X
25._EET_272_[ECU]___
__GGCC______CTCC__AACTAGX_XX_X

Input profile: EET_272_[ECU] RUQ_6

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._EET_272_[ECU] MITC-000381

identical
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

2._EET_272_[ECU] GC-03-32-3-11

70.7 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

3._EET_272_[ECU] RUQ_6

59.4 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Ame
0.185 IMC
0.266 Nan
0.488

4._EET_272_[ECU] GC-03-032-3-11

50 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

5._EET_272_[ECU] GC-03-032-3-11

50 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

6._EET_272_[ECU] GC-03-032-3-11

50 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

7._EET_272_[ECU] GC-03-032-3-11

50 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._EET_272_[ECU] GC-03-032-3-11

50 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._EET_272_[ECU] GC-03-032-3-11

50 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

10._EET_272_[ECU] GC-03-032-3-11

50 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._EET_272_[ECU] GC-03-032-3-11

50 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

12._EET_272_[ECU]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

13._EET_272_[ECU]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016

14._EET_272_[ECU]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

15._EET_272_[ECU]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

16._EET_272_[ECU]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

17._EET_272_[ECU]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

18._EET_272_[ECU]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

19._EET_272_[ECU]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

20._EET_272_[ECU] RUQ_6

44.4 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._EET_272_[ECU]

44.2 %
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

22._EET_272_[ECU] GC-03-032-3-11

36.3 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

23._EET_272_[ECU]

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

24._EET_272_[ECU] GC-03-032-3-11

35.4 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

25._EET_272_[ECU]

33.8 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998