SNP Profiles of SC 1 [UNK] View Data

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_Input profile	CC	AC	AA	AC	AA	AG	AG	CC	AA	GG	GG	AA	AA	CC
1._ICS_39___	__	__	__	__	__	__	AG	__	__	__	__	__	__	__
2._ICS_39___	AC	AC	AG	AA	AG	AG	AA	AC	AA	GG	AG	AA	AA	AC
3._ICS_39___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
4._ICS_39___	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
5._ICS_39___	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
6._ICS_39___	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
7._ICS_39___	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
8._ICS_39___	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
9._ICS_39___	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
10._ICS_39___	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
11._ICS_39___	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
12._ICS_39___	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
13._ICS_39___	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
14._ICS_39___	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
15._ICS_39___	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
16._ICS_39___	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
17._ICS_39___	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
18._ICS_39___	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
19._ICS_39___	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AA	AA	GG	AA	GG	AC	AA	GG	AA	CC	AG	GG
1._ICS_39___	__	TT	__	__	__	__	__	AC	__	CC	__	__	__	__
2._ICS_39___	AG	AA	GG	AG	GG	AA	AG	AC	AG	CC	AG	AC	AG	AG
3._ICS_39___	__	TT	TT	__	__	TT	__	AC	TT	CC	AG	GG	CT	CC
4._ICS_39___	__	GT	CC	__	__	TT	__	AC	CT	GG	AG	GT	CT	CT
5._ICS_39___	__	GT	CC	__	__	TT	__	AC	CT	GG	AG	GT	CT	CT
6._ICS_39___	__	GT	CC	__	__	TT	__	AC	CT	CG	AG	GT	CT	CT
7._ICS_39___	__	GT	CC	__	__	TT	__	AC	CT	CG	AG	GT	CT	CT
8._ICS_39___	__	GT	CC	__	__	TT	__	AC	CT	CG	AG	GT	CT	CT
9._ICS_39___	__	GT	CC	__	__	TT	__	AC	CT	CG	AG	GT	CT	CT
10._ICS_39___	__	GT	CC	__	__	TT	__	AC	CT	CG	AG	GT	CT	CT
11._ICS_39___	__	GT	CC	__	__	TT	__	AC	CT	CG	AG	GT	CT	CT
12._ICS_39___	__	GT	CC	__	__	TT	__	AC	CT	CG	AG	GT	CT	CT
13._ICS_39___	CT	GT	CC	TT	GG	TT	CT	AC	CT	CG	AG	GT	CT	CT
14._ICS_39___	CT	GT	CC	TT	GG	TT	CT	AC	CT	CG	AG	GT	CT	CT
15._ICS_39___	CT	GT	CC	TT	GG	TT	CT	AC	CT	CG	AG	GT	CT	CT
16._ICS_39___	CT	GT	CC	TT	GG	TT	CT	AC	CT	CG	AG	GT	CT	CT
17._ICS_39___	CT	GT	CC	TT	GG	TT	CT	AC	CT	CG	AG	GT	CT	CT
18._ICS_39___	CT	GT	CC	TT	GG	TT	CT	AC	CT	CG	AG	GT	CT	CT
19._ICS_39___	CT	GT	CC	TT	GG	TT	CT	AC	CT	CG	AG	GT	CT	CT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	GG	AC	GG	AG	GG	AG	GG	CC	TT	TT	GG	GG	AT
1._ICS_39___	__	__	__	__	AG	__	__	__	__	__	__	GG	__	__
2._ICS_39___	AT	AG	AC	CG	AG	GG	AG	GG	CC	AT	AT	AG	AG	AT
3._ICS_39___	__	__	AC	CC	AG	__	CT	GG	__	__	TT	__	__	AT
4._ICS_39___	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__	AT
5._ICS_39___	__	__	AC	GG	AG	__	CT	GG	__	__	AT	__	__	AT
6._ICS_39___	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__	AT
7._ICS_39___	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__	AT
8._ICS_39___	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__	AT
9._ICS_39___	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__	AT
10._ICS_39___	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__	AT
11._ICS_39___	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__	AT
12._ICS_39___	__	__	__	CG	AG	__	CT	GG	__	__	AT	__	__	AT
13._ICS_39___	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG	AT
14._ICS_39___	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG	AT
15._ICS_39___	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG	AT
16._ICS_39___	CC	AG	AC	CG	AG	CC	CT	GG	GG	AT	AT	AG	AG	AT
17._ICS_39___	CC	AG	AC	CG	AG	CC	CT	GG	GG	AT	AT	AG	AG	AT
18._ICS_39___	CC	AG	AC	CG	AG	CC	CT	GG	GG	AT	AT	AG	AG	AT
19._ICS_39___	CC	AG	__	CG	AG	CC	CT	GG	GG	AT	AT	AG	AG	AT

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	GG	GG	GG	AA	GG	AA	AA	CC	AA	AC	GG	GG	AA
1._ICS_39___	__	__	__	__	__	__	__	__	CC	__	__	__	GG	AA
2._ICS_39___	AG	AG	AG	GG	AT	CG	AG	CC	CC	GG	AC	AA	CG	AC
3._ICS_39___	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG	AA
4._ICS_39___	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC	AC
5._ICS_39___	__	__	__	AG	__	__	__	__	CC	__	GT	__	CC	AC
6._ICS_39___	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC	AC
7._ICS_39___	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC	AC
8._ICS_39___	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC	AC
9._ICS_39___	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC	AC
10._ICS_39___	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC	AC
11._ICS_39___	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC	AC
12._ICS_39___	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC	AC
13._ICS_39___	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CC	AC
14._ICS_39___	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CC	AC
15._ICS_39___	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CC	AC
16._ICS_39___	CT	AG	AG	GG	AT	CG	CT	CC	CC	GG	GT	AA	CC	AC
17._ICS_39___	CT	AG	AG	GG	AT	CG	CT	CC	CC	GG	GT	AA	CC	AC
18._ICS_39___	CT	AG	AG	GG	AT	CG	CT	CC	CC	GG	GT	AA	CC	AC
19._ICS_39___	CT	AG	AG	GG	AT	CG	CT	CC	CC	GG	GT	AA	CC	AC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	GG	GG	AA	AA	CC	GG	AA	AA	AC	AA	AC	CC	GG
1._ICS_39___	__	CC	__	__	__	GG	GG	__	__	__	__	AC	TT	__
2._ICS_39___	AG	GG	AG	AA	AG	AA	AG	AG	AC	CC	AC	AC	CC	AG
3._ICS_39___	__	__	CC	__	__	GG	__	__	__	__	__	__	__	__
4._ICS_39___	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
5._ICS_39___	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
6._ICS_39___	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
7._ICS_39___	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
8._ICS_39___	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
9._ICS_39___	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
10._ICS_39___	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
11._ICS_39___	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
12._ICS_39___	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
13._ICS_39___	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	CC	GG	AA
14._ICS_39___	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	CC	GG	AA
15._ICS_39___	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	CC	GG	AA
16._ICS_39___	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	CC	GG	AA
17._ICS_39___	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	CC	GG	AA
18._ICS_39___	CT	CC	CT	AG	__	GT	AG	CT	GT	GT	GT	CC	GG	AA
19._ICS_39___	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	CC	GG	AA

	71	72	73	74	75	76	77	78	79	80	81
_Input profile	GG	GG	GG	GG	CC	AG	GG	GG	AT	AA	AG	X_X	X_X	X_X
1._ICS_39___	CC	__	__	GG	__	__	__	__	__	__	AG	X_X	X_X	X_X
2._ICS_39___	CG	GG	GG	GG	AC	AA	GG	AG	AA	AG	AA	X_X	X_X	X_X
3._ICS_39___	CC	CC	__	__	__	CT	GG	__	AT	TT	AG	X_X	X_X	X_X
4._ICS_39___	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X	X_X
5._ICS_39___	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X	X_X
6._ICS_39___	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X	X_X
7._ICS_39___	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X	X_X
8._ICS_39___	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X	X_X
9._ICS_39___	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X	X_X
10._ICS_39___	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X	X_X
11._ICS_39___	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X	X_X
12._ICS_39___	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X	X_X
13._ICS_39___	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X	X_X
14._ICS_39___	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X	X_X
15._ICS_39___	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X	X_X
16._ICS_39___	CG	CC	CC	GG	AC	TT	GG	__	AA	CT	AA	X_X	X_X	X_X
17._ICS_39___	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X	X_X
18._ICS_39___	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X	X_X
19._ICS_39___	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X	X_X

Input profile: ICS_39 RUQ_1089

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

1._ICS_39 RUQ_1089

64.7 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.077 IMC
0.380 LCT
0.051 Nan
0.464

2._ICS_39 ICS_39_Fld#_30_Plt#_2

64.2 %
81 shared markers

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USDA-TARS, United States of America

Location: Field: 30, Tree: 2

3._ICS_39 RUQ_1089

45.6 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

4._ICS_39

41.2 %
34 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Row 9 C0200 2A

Dapeng Zhang, 2016

5._ICS_39

41.2 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E361 T3

Dapeng Zhang, 2016

6._ICS_39

39.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL5 FP

Dapeng Zhang, 2016

7._ICS_39

39.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL15 F

Dapeng Zhang, 2016

8._ICS_39

39.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL14 F

Dapeng Zhang, 2016

9._ICS_39

39.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 16

Dapeng Zhang, 2016

10._ICS_39

39.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 12

Dapeng Zhang, 2016

11._ICS_39

39.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 9

Dapeng Zhang, 2016

12._ICS_39

37.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL8 FP

Dapeng Zhang, 2016

13._ICS_39 GC-01-085-5-02

32.5 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

14._ICS_39 GC-01-085-5-02

32.5 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

15._ICS_39 GC-01-085-5-02

32.5 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

16._ICS_39 GC-01-85-5-02

30.6 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL5

Notes: PL5 FP2

17._ICS_39 GC-01-85-5-02

30.2 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL15

Notes: PL15 FP4

18._ICS_39 GC-01-85-5-02

30 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL14

Notes: PL14 FP3

19._ICS_39 GC-01-85-5-02

29.4 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL8

Notes: PL8 FP1

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1383	20	TcSNP1414
21	TcSNP1439	22	TcSNP144	23	TcSNP1442	24	TcSNP1458	25	TcSNP1484
26	TcSNP150	27	TcSNP151	28	TcSNP1520	29	TcSNP154	30	TcSNP174
31	TcSNP193	32	TcSNP226	33	TcSNP230	34	TcSNP240	35	TcSNP242
36	TcSNP25	37	TcSNP28	38	TcSNP316	39	TcSNP32	40	TcSNP329
41	TcSNP364	42	TcSNP372	43	TcSNP413	44	TcSNP418	45	TcSNP42
46	TcSNP429	47	TcSNP430	48	TcSNP448	49	TcSNP497	50	TcSNP521
51	TcSNP529	52	TcSNP547	53	TcSNP560	54	TcSNP561	55	TcSNP577
56	TcSNP591	57	TcSNP60	58	TcSNP602	59	TcSNP619	60	TcSNP653
61	TcSNP689	62	TcSNP723	63	TcSNP731	64	TcSNP75	65	TcSNP751
66	TcSNP776	67	TcSNP799	68	TcSNP823	69	TcSNP836	70	TcSNP860
71	TcSNP872	72	TcSNP891	73	TcSNP894	74	TcSNP899	75	TcSNP90
76	TcSNP917	77	TcSNP929	78	TcSNP944	79	TcSNP953	80	TcSNP994
81	TcSNP998