SNP Profiles of LP 1 /41 [POU]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACCCGGACAAGGAGACATAAGGGGAAAA
1._RUQ_353
____________AG______________
2._LP_1_/41_[POU]
__________CCAG__AT__________
3._RUQ_353
__________CCAG__AT__________
4._RUQ_353
__________CC__GT____GG______
5._GC-05-055-2-06
ACCCAGACTTCTAGGGAACCAGTTTTGG
6._GC-05-148-4-01
ACCCAGACTTCTAGGGAACCAGTTTTGG
7._GC-05-148-4-01
ACCCAGACTTCTAGGGAACCAGTTTTGG
8._GC-05-148-4-01
ACCCAGACTTCTAGGGAACCAGTTTTGG
9._GC-05-055-2-06
ACCCAGACTTCTAGGGAACCAGTTTTGG
10._GC-05-055-2-06
ACCCAGACTTCTAGGGAACCAGTTTTGG
11._GC-05-148-4-01
ACCCAGACTTCTAGGGAACCAGTTTTGG
12._GC-05-148-4-01
ACCCAGACTTCTAGGGAACCAGTTTTGG
13._GC-05-055-2-06
ACCCAGACTTCTAGGGAACCAGTTTTGG
14._GC-05-055-2-06
ACCCAGACTTCTAGGGAACCAGTTTTGG
15._LP_1_/41_[POU]
__________CTAG__AA__________
16._LP_1_/41_[POU]
__________CTAG__AA__________
17._LP_1_/41_[POU]
__________CTAG__AA__________
18._LP_1_/41_[POU]
__________CTAG__AA__________
19._LP_1_/41_[POU]
__________CTAG__AA__________
20._LP_1_/41_[POU]
__________CTAG__AA__________
21._LP_1_/41_[POU]
__________CTAG__AA__________
22._LP_1_/41_[POU]
__________CTAG__AA__________
23._LP_1_/41_[POU]
__________CTAG__AA__________
24._LP_1_/41_[POU]
__________CTAG__AA__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGAAGGGGCCGGAGAGCCAGCGAGCCAG
1._RUQ_353
__TT____________CC__CG______
2._LP_1_/41_[POU]
__TTCC__CC__CT__CCCTCGAGGGCT
3._RUQ_353
__TTCC__CC__CT__CCCTCGAGGGCT
4._RUQ_353
__TT__CC______CTCCCTCGAGGGCT
5._GC-05-055-2-06
CTGTTTTT__GGCTCTCCCCCGAAGTCT
6._GC-05-148-4-01
CTGTTTTT__GGCTCTCCCCCGAAGTCT
7._GC-05-148-4-01
CTGTTTTT__GGCTCTCCCCCGAAGTCT
8._GC-05-148-4-01
CTGTTTTT__GGCTCTCCCCCGAAGTCT
9._GC-05-055-2-06
CTGTTTTT__GGCTCTCCCCCGAAGTCT
10._GC-05-055-2-06
CTGTTTTT__GGCTCTCCCCCGAAGTCT
11._GC-05-148-4-01
CTGTTTTT__GGCTCTCCCCCGAAGTCT
12._GC-05-148-4-01
CTGTTTTT__GGCTCTCCCCCGAAGTCT
13._GC-05-055-2-06
CTGTTTTT__GGCTCTCCCCCGAAGTCT
14._GC-05-055-2-06
CTGTTTTT__GGCTCTCCCCCGAAGTCT
15._LP_1_/41_[POU]
__GTTT______CT__CCCCCGAAGTCT
16._LP_1_/41_[POU]
__GTTT______CT__CCCCCGAAGTCT
17._LP_1_/41_[POU]
__GTTT______CT__CCCCCGAAGTCT
18._LP_1_/41_[POU]
__GTTT______CT__CCCCCGAAGTCT
19._LP_1_/41_[POU]
__GTTT______CT__CCCCCGAAGTCT
20._LP_1_/41_[POU]
__GTTT______CT__CCCCCGAAGTCT
21._LP_1_/41_[POU]
__GTTT______CT__CCCCCGAAGTCT
22._LP_1_/41_[POU]
__GTTT______CT__CCCCCGAAGTCT
23._LP_1_/41_[POU]
__GTTT______CT__CCCCCGAAGTCT
24._LP_1_/41_[POU]
__GTTT______CT__CCCCCGAAGTCT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AGTTGGCCGGAAGGGGCGCCATAAGGGG
1._RUQ_353
__________AA____________GG__
2._LP_1_/41_[POU]
CT____CC__AA__CCCG____AA____
3._RUQ_353
CT____CCCCAA__CCCG____AA____
4._RUQ_353
____GGCCCCAA__CC________GGGG
5._GC-05-055-2-06
CCATGGAACGAGGGTTGGGGATATAGGG
6._GC-05-148-4-01
CCATGGAACGAGGGTTGGGGATATAGGG
7._GC-05-148-4-01
CCATGGAACGAGGGTTGGGGATATAGGG
8._GC-05-148-4-01
CCATGGAACGAGGGTTGGGGATATAGGG
9._GC-05-055-2-06
CCATGGAACGAGGGTTGGGGATATAGGG
10._GC-05-055-2-06
CCATGGAACGAGGGTTGGGGATATAGGG
11._GC-05-148-4-01
CCATGGAACGAGGGTTGGGGATATAGGG
12._GC-05-148-4-01
CCATGGAACGAGGGTTGGGGATATAGGG
13._GC-05-055-2-06
CCATGGAACGAGGGTTGGGGATATAGGG
14._GC-05-055-2-06
CCATGGAACGAGGGTTGGGGATATAGGG
15._LP_1_/41_[POU]
CC____AACGAG__TTGG____AT____
16._LP_1_/41_[POU]
CC____AACGAG__TTGG____AT____
17._LP_1_/41_[POU]
CC____AACGAG__TTGG____AT____
18._LP_1_/41_[POU]
CC____AACGAG__TTGG____AT____
19._LP_1_/41_[POU]
CC____AACGAG__TTGG____AT____
20._LP_1_/41_[POU]
CC____AACGAG__TTGG____AT____
21._LP_1_/41_[POU]
CC____AACGAG__TTGG____AT____
22._LP_1_/41_[POU]
CC____AACGAG__TTGG____AT____
23._LP_1_/41_[POU]
CC____AACGAG__TTGG____AT____
24._LP_1_/41_[POU]
CC____AACGAG__TTGG____AT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTGGAAAAGGAAGGAGACCCAGCCAGGG
1._RUQ_353
__________________CC______GG
2._LP_1_/41_[POU]
TT______GG________CC__GG__GG
3._RUQ_353
TT______GG________CC__GG__GG
4._RUQ_353
TT__________CC____CC__GG__GG
5._GC-05-055-2-06
AACTGGGGGGAACG__ACACAAGTAGGG
6._GC-05-148-4-01
AACTGGGGGGAACG__ACACAAGTAGGG
7._GC-05-148-4-01
AACTGGGGGGAACG__ACACAAGTAGGG
8._GC-05-148-4-01
AACTGGGGGGAACG__ACACAAGTAGGG
9._GC-05-055-2-06
AACTGGGGGGAACG__ACACAAGTAGGG
10._GC-05-055-2-06
AACTGGGGGGAACG__ACACAAGTAGGG
11._GC-05-148-4-01
AACTGGGGGGAACG__ACACAAGTAGGG
12._GC-05-148-4-01
AACTGGGGGGAACG__ACACAAGTAGGG
13._GC-05-055-2-06
AACTGGGGGGAACG__ACACAAGTAGGG
14._GC-05-055-2-06
AACTGGGGGGAACG__ACACAAGTAGGG
15._LP_1_/41_[POU]
AA______GG________AC__GT__GG
16._LP_1_/41_[POU]
AA______GG________AC__GT__GG
17._LP_1_/41_[POU]
AA______GG________AC__GT__GG
18._LP_1_/41_[POU]
AA______GG________AC__GT__GG
19._LP_1_/41_[POU]
AA______GG________AC__GT__GG
20._LP_1_/41_[POU]
AA______GG________AC__GT__GG
21._LP_1_/41_[POU]
AA______GG________AC__GT__GG
22._LP_1_/41_[POU]
AA______GG________AC__GT__GG
23._LP_1_/41_[POU]
AA______GG________AC__GT__GG
24._LP_1_/41_[POU]
AA______GG________AC__GT__GG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCGGAAAGAGAGCCAGAAAAACCCCCGG
1._RUQ_353
CC__TT______GGAG________CCCT
2._LP_1_/41_[POU]
CC____CT____GG______________
3._RUQ_353
CC____CT____GG______________
4._RUQ_353
CC__TTCT____GGAGTT____GGCC__
5._GC-05-055-2-06
ACCCCTCCAAAAGGAGTTGTGTTTACGG
6._GC-05-148-4-01
ACCCCTCCAAAAGGAGTTGTGTTTACGG
7._GC-05-148-4-01
ACCCCTCCAAAAGGAGTTGTGTTTACGG
8._GC-05-148-4-01
ACCCCTCCAAAAGGAGTTGTGTTTACGG
9._GC-05-055-2-06
ACCCCTCCAAAAGGAGTTGTGTTTACGG
10._GC-05-055-2-06
ACCCCTCCAAAAGGAGTTGTGTTTACGG
11._GC-05-148-4-01
ACCCCTCCAAAAGGAGTTGTGTTTACGG
12._GC-05-148-4-01
ACCCCTCCAAAAGGAGTTGTGTTTACGG
13._GC-05-055-2-06
ACCCCTCCAAAAGGAGTTGTGTTTACGG
14._GC-05-055-2-06
ACCCCTCCAAAAGGAGTTGTGTTTACGG
15._LP_1_/41_[POU]
AC____CC____GG______________
16._LP_1_/41_[POU]
AC____CC____GG______________
17._LP_1_/41_[POU]
AC____CC____GG______________
18._LP_1_/41_[POU]
AC____CC____GG______________
19._LP_1_/41_[POU]
AC____CC____GG______________
20._LP_1_/41_[POU]
AC____CC____GG______________
21._LP_1_/41_[POU]
AC____CC____GG______________
22._LP_1_/41_[POU]
AC____CC____GG______________
23._LP_1_/41_[POU]
AC____CC____GG______________
24._LP_1_/41_[POU]
AC____CC____GG______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
AACCAACCGGCCAAGGGGATAAAAX_XX_X
1._RUQ_353
__GG____GG____________AAX_XX_X
2._LP_1_/41_[POU]
__GGTT______TTGG__ATTTAAX_XX_X
3._RUQ_353
__GGTT______TTGG__ATTTAAX_XX_X
4._RUQ_353
__GGTT____CC__________AAX_XX_X
5._GC-05-055-2-06
AAGGCTCCAGCCCTGG__AACTAAX_XX_X
6._GC-05-148-4-01
AAGGCTCCAGCCCTGGCCAACTAAX_XX_X
7._GC-05-148-4-01
AAGGCTCCAGCCCTGGCCAACTAAX_XX_X
8._GC-05-148-4-01
AAGGCTCCAGCCCTGGCCAACTAAX_XX_X
9._GC-05-055-2-06
AAGGCTCCAGCCCTGGCCAACTAAX_XX_X
10._GC-05-055-2-06
AAGGCTCCAGCCCTGGCCAACTAAX_XX_X
11._GC-05-148-4-01
AAGGCTCCAGCCCTGGCCAACTAAX_XX_X
12._GC-05-148-4-01
AAGGCTCCAGCCCTGGCCAACTAAX_XX_X
13._GC-05-055-2-06
AAGGCTCC__CCCTGGCCAACTAAX_XX_X
14._GC-05-055-2-06
__GGCTCCAGCCCTGGCCAACTAAX_XX_X
15._LP_1_/41_[POU]
__GGCT______CTGG__AACTAAX_XX_X
16._LP_1_/41_[POU]
__GGCT______CTGG__AACTAAX_XX_X
17._LP_1_/41_[POU]
__GGCT______CTGG__AACTAAX_XX_X
18._LP_1_/41_[POU]
__GGCT______CTGG__AACTAAX_XX_X
19._LP_1_/41_[POU]
__GGCT______CTGG__AACTAAX_XX_X
20._LP_1_/41_[POU]
__GGCT______CTGG__AACTAAX_XX_X
21._LP_1_/41_[POU]
__GGCT______CTGG__AACTAAX_XX_X
22._LP_1_/41_[POU]
__GGCT______CTGG__AACTAAX_XX_X
23._LP_1_/41_[POU]
__GGCT______CTGG__AACTAAX_XX_X
24._LP_1_/41_[POU]
__GGCT______CTGG__AACTAAX_XX_X

Input profile: LP_1_/41_[POU] RUQ_353

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._LP_1_/41_[POU] RUQ_353

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._LP_1_/41_[POU]

52.9 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C796
 Dapeng Zhang, 2016

3._LP_1_/41_[POU] RUQ_353

51.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._LP_1_/41_[POU] RUQ_353

47.2 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._LP_1_/41_[POU] GC-05-055-2-06

41.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

6._LP_1_/41_[POU] GC-05-148-4-01

40.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._LP_1_/41_[POU] GC-05-148-4-01

40.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

8._LP_1_/41_[POU] GC-05-148-4-01

40.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

9._LP_1_/41_[POU] GC-05-055-2-06

40.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

10._LP_1_/41_[POU] GC-05-055-2-06

40.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._LP_1_/41_[POU] GC-05-148-4-01

40.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

12._LP_1_/41_[POU] GC-05-148-4-01

40.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._LP_1_/41_[POU] GC-05-055-2-06

40.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._LP_1_/41_[POU] GC-05-055-2-06

39.9 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._LP_1_/41_[POU]

33.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 2 > FP
 Dapeng Zhang, 2016

16._LP_1_/41_[POU]

33.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 2
 Dapeng Zhang, 2016

17._LP_1_/41_[POU]

33.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 4
 Dapeng Zhang, 2016

18._LP_1_/41_[POU]

33.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 5
 Dapeng Zhang, 2016

19._LP_1_/41_[POU]

33.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 1 > FP
 Dapeng Zhang, 2016

20._LP_1_/41_[POU]

33.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 3 > FP
 Dapeng Zhang, 2016

21._LP_1_/41_[POU]

33.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 3
 Dapeng Zhang, 2016

22._LP_1_/41_[POU]

33.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 4
 Dapeng Zhang, 2016

23._LP_1_/41_[POU]

33.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 5
 Dapeng Zhang, 2016

24._LP_1_/41_[POU]

33.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 1 > FP
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998