SNP Profiles of IMC 47 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	CC	AG	AC	AA	GG	GG	CC	AA	GG	AG	AA	GG	AA
1._MO_9___	__	__	__	__	__	__	GG	__	__	__	__	__	__	__
2._MO_9___	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
3._MO_9___	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
4._MO_9___	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
5._MO_9___	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
6._MO_9___	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
7._MO_9___	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
8._MO_9___	CC	CC	AG	AC	TT	CC	GG	GG	AA	CC	AG	TT	CC	TT
9._MO_9___	CC	CC	AG	AC	TT	CC	GG	GG	AA	CC	AG	TT	CC	TT
10._MO_9___	CC	CC	AG	AC	TT	CC	GG	GG	AA	CC	AG	TT	CC	TT
11._MO_9___	CC	CC	AG	AC	TT	CC	GG	GG	AA	CC	AG	TT	CC	TT
12._MO_9___	CC	CC	AG	AC	TT	CC	GG	GG	AA	CC	AG	TT	CC	TT
13._MO_9___	CC	AC	GG	AC	TT	CT	AG	GG	AA	CT	AG	TT	CT	GT
14._MO_9___	CC	AC	GG	AC	TT	CT	AG	GG	AA	CT	AG	TT	CT	GT
15._MO_9___	CC	AC	GG	AC	TT	CT	AG	GG	AA	CT	AG	TT	CT	GT
16._MO_9___	CC	AC	GG	AC	TT	CT	AG	GG	AA	CT	AG	TT	CT	GT
17._MO_9___	CC	AC	GG	AC	TT	CT	AG	GG	__	CT	AG	TT	CT	GT
18._MO_9___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
19._MO_9___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
20._MO_9___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
21._MO_9___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
22._MO_9___	__	__	__	__	__	CT	AG	__	__	__	__	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	GG	GG	AC	GG	AA	AG	AC	AG	CG	GG	AC	GG
1._MO_9___	__	TT	__	__	__	__	__	__	AC	__	CG	__	__	__
2._MO_9___	__	TT	CC	__	AC	__	TT	__	AC	CT	CG	GG	GT	CC
3._MO_9___	__	TT	CC	__	AC	__	TT	__	AC	CT	CG	GG	GT	CC
4._MO_9___	__	TT	CC	__	AC	__	TT	__	AC	CT	CG	GG	GT	CC
5._MO_9___	__	TT	CC	__	AC	__	TT	__	AC	CT	CG	GG	GT	CC
6._MO_9___	__	TT	CC	__	AC	__	TT	__	AC	CT	CG	GG	GT	CC
7._MO_9___	__	TT	CC	__	AC	__	TT	__	AC	CT	CG	GG	GT	CC
8._MO_9___	TT	TT	CC	__	AC	GG	TT	CT	AC	CT	CG	GG	GT	CC
9._MO_9___	TT	TT	CC	__	AC	GG	TT	CT	AC	CT	CG	GG	GT	CC
10._MO_9___	TT	TT	CC	__	AC	GG	TT	CT	AC	CT	CG	GG	GT	CC
11._MO_9___	TT	TT	CC	__	AC	GG	TT	CT	AC	CT	CG	GG	GT	CC
12._MO_9___	TT	TT	CC	__	AC	GG	TT	CT	AC	CT	CG	GG	GT	CC
13._MO_9___	CT	GT	CC	__	AC	AG	CT	CT	AA	TT	CG	AA	GG	CT
14._MO_9___	CT	GT	CC	__	AC	AG	CT	CT	AA	TT	CG	AA	GG	CT
15._MO_9___	CT	GT	CC	__	AC	AG	CT	CT	AA	TT	CG	AA	GG	CT
16._MO_9___	CT	GT	CC	__	AC	AG	CT	CT	AA	TT	CG	AA	GG	CT
17._MO_9___	CT	GT	CC	__	AC	AG	CT	CT	AA	TT	CG	AA	GG	CT
18._MO_9___	__	GT	CC	__	AC	__	CT	__	AA	TT	CG	AA	GG	CT
19._MO_9___	__	GT	CC	__	AC	__	CT	__	AA	TT	CG	AA	GG	CT
20._MO_9___	__	GT	CC	__	AC	__	CT	__	AA	TT	CG	AA	GG	CT
21._MO_9___	__	GT	CC	__	AC	__	CT	__	AA	TT	CG	AA	GG	CT
22._MO_9___	__	GT	CC	__	AC	__	CT	__	AA	TT	CG	AA	GG	CT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	TT	GG	AC	GG	AA	GG	GG	GG	CC	TT	AA	GG	GG
1._MO_9___	__	__	__	__	__	AA	__	__	__	__	__	__	GG	__
2._MO_9___	CC	__	__	AC	__	AA	__	CC	GG	__	__	AA	__	__
3._MO_9___	CC	__	__	__	CC	AA	__	CC	GG	__	__	AA	__	__
4._MO_9___	CC	__	__	AA	CC	AA	__	CC	GG	__	__	AA	__	__
5._MO_9___	CC	__	__	AA	CC	AA	__	CC	GG	__	__	AA	__	__
6._MO_9___	CC	__	__	AA	CC	AA	__	CC	GG	__	__	AA	__	__
7._MO_9___	CC	__	__	AA	CC	AA	__	CC	GG	__	__	AA	__	__
8._MO_9___	CC	AA	GG	__	CC	AA	GG	CC	GG	GG	AA	AA	GG	GG
9._MO_9___	CC	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	AA	GG	GG
10._MO_9___	CC	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	AA	GG	GG
11._MO_9___	CC	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	AA	GG	GG
12._MO_9___	CC	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	AA	GG	GG
13._MO_9___	CT	AT	GG	AC	CG	AG	GG	CT	CG	GT	AT	AT	AA	AG
14._MO_9___	CT	AT	GG	AC	CG	AG	GG	CT	CG	GT	AT	AT	AA	AG
15._MO_9___	CT	AT	GG	AC	CG	AG	GG	CT	CG	GT	AT	AT	AA	AG
16._MO_9___	CT	AT	GG	AC	CG	AG	GG	CT	CG	GT	AT	AT	AA	AG
17._MO_9___	CT	AT	GG	AC	CG	AG	GG	CT	CG	GT	AT	AT	AA	AG
18._MO_9___	CT	__	__	AC	CG	AG	__	CT	CG	__	__	AT	__	__
19._MO_9___	CT	__	__	AC	CG	AG	__	CT	CG	__	__	AT	__	__
20._MO_9___	CT	__	__	AC	CG	AG	__	CT	CG	__	__	AT	__	__
21._MO_9___	CT	__	__	AC	CG	AG	__	CT	CG	__	__	AT	__	__
22._MO_9___	CT	__	__	AC	CG	AG	__	CT	CG	__	__	AT	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	AA	GG	GG	GG	TT	GG	GG	CC	CC	AG	AC	GG	GG
1._MO_9___	__	__	__	__	__	__	__	__	__	CC	__	__	__	GG
2._MO_9___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG
3._MO_9___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG
4._MO_9___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG
5._MO_9___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG
6._MO_9___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG
7._MO_9___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG
8._MO_9___	AA	TT	GG	GG	GG	TT	CC	__	CC	CC	AG	GT	GG	GG
9._MO_9___	AA	TT	GG	GG	GG	TT	CC	__	CC	CC	AG	GT	GG	GG
10._MO_9___	AA	TT	GG	GG	GG	TT	CC	__	CC	CC	AG	GT	GG	GG
11._MO_9___	AA	TT	GG	GG	GG	TT	CC	__	CC	CC	AG	GT	GG	GG
12._MO_9___	AA	TT	GG	GG	GG	TT	CC	__	CC	CC	AG	GT	GG	GG
13._MO_9___	AT	CT	AG	GG	AG	AA	GG	__	AC	AC	AG	GT	AG	CG
14._MO_9___	AT	CT	AG	GG	AG	AA	GG	__	AC	AC	AG	GT	AG	CG
15._MO_9___	AT	CT	AG	GG	AG	AA	GG	__	AC	AC	AG	GT	AG	CG
16._MO_9___	AT	CT	AG	GG	AG	AA	GG	__	AC	AC	AG	GT	AG	CG
17._MO_9___	AT	CT	AG	GG	AG	AA	GG	__	AC	AC	AG	GT	AG	CG
18._MO_9___	AT	__	__	__	AG	__	__	__	__	AC	__	GT	__	CG
19._MO_9___	AT	__	__	__	AG	__	__	__	__	AC	__	GT	__	CG
20._MO_9___	AT	__	__	__	AG	__	__	__	__	AC	__	GT	__	CG
21._MO_9___	AT	__	__	__	AG	__	__	__	__	AC	__	GT	__	CG
22._MO_9___	AT	__	__	__	AG	__	__	__	__	AC	__	GT	__	CG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	GG	AA	AA	AA	AA	CC	AG	AA	AC	CC	AA	AA	CC
1._MO_9___	CC	__	TT	__	__	__	GG	AG	__	__	__	__	AA	TT
2._MO_9___	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
3._MO_9___	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
4._MO_9___	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
5._MO_9___	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
6._MO_9___	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
7._MO_9___	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
8._MO_9___	CC	CC	TT	TT	AA	AA	GG	AG	TT	GT	GG	TT	AA	GG
9._MO_9___	CC	CC	TT	TT	AA	AA	GG	AG	TT	GT	GG	TT	AA	GG
10._MO_9___	CC	CC	TT	TT	AA	AA	GG	AG	TT	GT	GG	TT	AA	GG
11._MO_9___	CC	CC	TT	TT	AA	AA	GG	AG	TT	GT	GG	TT	AA	GG
12._MO_9___	CC	CC	TT	TT	AA	AA	GG	AG	TT	GT	GG	TT	AA	GG
13._MO_9___	AC	CT	CC	TT	AA	AA	GT	AG	CT	GT	GG	TT	AC	CG
14._MO_9___	AC	CT	CC	TT	AA	AA	GT	AG	CT	GT	GG	TT	AC	CG
15._MO_9___	AC	CT	CC	TT	AA	AA	GT	AG	CT	GT	GG	TT	AC	CG
16._MO_9___	AC	CT	CC	TT	AA	AA	GT	AG	CT	GT	GG	TT	AC	CG
17._MO_9___	AC	CT	CC	TT	AA	AA	GT	AG	CT	GT	GG	TT	AC	CG
18._MO_9___	AC	__	__	TT	__	__	GT	__	__	__	__	__	__	__
19._MO_9___	AC	__	__	TT	__	__	GT	__	__	__	__	__	__	__
20._MO_9___	AC	__	__	TT	__	__	GT	__	__	__	__	__	__	__
21._MO_9___	AC	__	__	TT	__	__	GT	__	__	__	__	__	__	__
22._MO_9___	AC	__	__	TT	__	__	GT	__	__	__	__	__	__	__

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	AG	CC	GG	GG	GG	CC	AG	CG	GG	AA	AG	AG	X_X	X_X
1._MO_9___	__	GG	__	__	GG	__	__	__	__	__	__	AG	X_X	X_X
2._MO_9___	__	GG	CC	__	__	__	CT	CG	__	AA	CT	AG	X_X	X_X
3._MO_9___	__	GG	CC	__	__	__	CT	CG	__	AA	CT	AG	X_X	X_X
4._MO_9___	__	GG	CC	__	__	__	CT	CG	__	AA	CT	AG	X_X	X_X
5._MO_9___	__	GG	CC	__	__	__	CT	CG	__	AA	CT	AG	X_X	X_X
6._MO_9___	__	GG	CC	__	__	__	CT	CG	__	AA	CT	AG	X_X	X_X
7._MO_9___	__	GG	CC	__	__	__	CT	CG	__	AA	CT	AG	X_X	X_X
8._MO_9___	AA	GG	CC	CC	GG	CC	CT	CG	CC	AA	CT	AG	X_X	X_X
9._MO_9___	AA	GG	CC	CC	GG	CC	CT	CG	CC	AA	CT	AG	X_X	X_X
10._MO_9___	AA	GG	CC	CC	GG	CC	CT	CG	CC	AA	CT	AG	X_X	X_X
11._MO_9___	AA	GG	CC	CC	GG	CC	CT	CG	CC	AA	CT	AG	X_X	X_X
12._MO_9___	AA	GG	CC	CC	__	CC	CT	CG	CC	AA	CT	AG	X_X	X_X
13._MO_9___	AA	CC	CT	CC	AG	AC	CT	CG	CT	AT	CT	AG	X_X	X_X
14._MO_9___	AA	CC	CT	CC	AG	AC	CT	CG	CT	AT	CT	AG	X_X	X_X
15._MO_9___	AA	CC	CT	CC	AG	AC	CT	CG	CT	AT	CT	AG	X_X	X_X
16._MO_9___	AA	CC	CT	CC	AG	AC	CT	CG	CT	AT	CT	AG	X_X	X_X
17._MO_9___	AA	CC	CT	CC	AG	AC	CT	CG	CT	AT	CT	AG	X_X	X_X
18._MO_9___	__	CC	CT	__	__	__	CT	CG	__	AT	CT	AG	X_X	X_X
19._MO_9___	__	CC	CT	__	__	__	CT	CG	__	AT	CT	AG	X_X	X_X
20._MO_9___	__	CC	CT	__	__	__	CT	CG	__	AT	CT	AG	X_X	X_X
21._MO_9___	__	CC	CT	__	__	__	CT	CG	__	AT	CT	AG	X_X	X_X
22._MO_9___	__	CC	CT	__	__	__	CT	CG	__	AT	CT	AG	X_X	X_X

Input profile: MO_9 RUQ_1691

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

1._MO_9 RUQ_1691

70.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

2._MO_9

52.9 %
34 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D835

Dapeng Zhang, 2016

3._MO_9

50 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5321 3 > FP

Dapeng Zhang, 2016

4._MO_9

50 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 5

Dapeng Zhang, 2016

5._MO_9

50 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 1 > FP

Dapeng Zhang, 2016

6._MO_9

50 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5321 2

Dapeng Zhang, 2016

7._MO_9

50 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5321 4 > FP

Dapeng Zhang, 2016

8._MO_9 GC-05-119-3-21

50 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

9._MO_9 GC-05-119-3-21

50 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

10._MO_9 GC-05-119-3-21

50 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

11._MO_9 GC-05-071-2-22

50 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

12._MO_9 GC-05-071-2-22

49.4 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

13._MO_9 GC-05-119-3-21

38.8 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

14._MO_9 GC-05-071-2-22

38.8 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

15._MO_9 GC-05-071-2-22

38.8 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

16._MO_9 GC-05-071-2-22

38.8 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

17._MO_9 GC-05-071-2-22

38 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

18._MO_9

37.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 4 > FP

Dapeng Zhang, 2016

19._MO_9

37.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 2 > FP

Dapeng Zhang, 2016

20._MO_9

37.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 3 > FP

Dapeng Zhang, 2016

21._MO_9

37.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5321 5

Dapeng Zhang, 2016

22._MO_9

35.3 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 2 > FP

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998