SNP Profiles of NA 670 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AC	CC	AA	AC	AA	GG	AG	CC	AA	GG	GG	AA	AA	CC
1._RUQ_1238	__	__	__	__	__	__	AG	__	__	__	__	__	__	__
2._NA_670	__	__	__	__	__	CC	AG	__	AA	__	__	__	__	__
3._NA_670	__	__	__	__	__	CC	AG	__	AA	__	__	__	__	__
4._NA_670	__	__	__	__	__	CC	AG	__	AA	__	__	__	__	__
5._NA_670	__	__	__	__	__	CC	AG	__	AA	__	__	__	__	__
6._RUQ_1238	__	__	__	__	__	CC	AG	__	AA	__	__	__	__	__
7._NA_670	__	__	__	__	__	CC	AG	__	AA	__	__	__	__	__
8._RUQ_1238	__	__	__	__	__	CC	__	GG	__	__	GG	__	__	__
9._GC-05-169-4-22	AC	CC	AA	AC	TT	CC	AG	GG	AA	CC	GG	TT	TT	GG
10._GC-05-169-4-22	AC	CC	AA	AC	TT	CC	AG	GG	AA	CC	GG	TT	TT	GG
11._GC-05-169-4-22	AC	CC	AA	AC	TT	CC	AG	GG	AA	CC	GG	TT	TT	GG
12._GC-05-169-4-22	AC	CC	AA	AC	TT	CC	AG	GG	AA	CC	GG	TT	TT	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AA	AA	AA	GG	AA	GG	CC	AA	GG	AG	CC	GG
1._RUQ_1238	__	GT	__	__	__	__	__	__	CC	__	CC	__	__	__
2._NA_670	__	GT	TT	__	AA	__	TT	__	CC	TT	CC	AG	GG	CC
3._NA_670	__	GT	TT	__	AA	__	TT	__	CC	TT	CC	AG	GG	CC
4._NA_670	__	GT	TT	__	AA	__	TT	__	CC	TT	CC	AG	GG	CC
5._NA_670	__	GT	TT	__	AA	__	TT	__	CC	TT	CC	AG	GG	CC
6._RUQ_1238	__	GT	TT	__	AA	__	TT	__	CC	TT	CC	AG	GG	CC
7._NA_670	__	GT	TT	__	AA	__	TT	__	CC	TT	CC	AG	GG	CC
8._RUQ_1238	__	GT	__	TT	__	__	__	CC	CC	TT	CC	AG	GG	CC
9._GC-05-169-4-22	TT	GT	TT	TT	AA	GG	TT	CC	CC	TT	CC	AG	GG	CC
10._GC-05-169-4-22	TT	GT	TT	TT	AA	GG	TT	CC	CC	TT	CC	AG	GG	CC
11._GC-05-169-4-22	TT	GT	TT	TT	AA	GG	TT	CC	CC	TT	CC	AG	GG	CC
12._GC-05-169-4-22	TT	GT	TT	TT	AA	GG	TT	CC	CC	TT	CC	AG	GG	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	AA	GG	AA	CG	AG	GG	GG	GG	CC	TT	TT	GG	GG
1._RUQ_1238	__	__	__	__	__	AG	__	__	__	__	__	__	GG	__
2._NA_670	CC	__	__	AA	CG	AG	__	CC	GG	__	__	TT	__	__
3._NA_670	CC	__	__	AA	CG	AG	__	CC	GG	__	__	TT	__	__
4._NA_670	CC	__	__	AA	CG	AG	__	CC	GG	__	__	TT	__	__
5._NA_670	CC	__	__	AA	CG	AG	__	CC	GG	__	__	TT	__	__
6._RUQ_1238	CC	__	__	AA	CG	AG	__	CC	GG	__	__	TT	__	__
7._NA_670	CC	__	__	AA	GG	AG	__	CC	GG	__	__	TT	__	__
8._RUQ_1238	__	__	GG	AA	CG	AG	__	CC	__	__	__	__	GG	GG
9._GC-05-169-4-22	CC	TT	GG	AA	CG	AG	GG	CC	GG	GG	AA	TT	GG	GG
10._GC-05-169-4-22	CC	TT	GG	AA	CG	AG	GG	CC	GG	GG	AA	TT	GG	GG
11._GC-05-169-4-22	CC	TT	GG	AA	CG	AG	GG	CC	GG	GG	AA	TT	GG	GG
12._GC-05-169-4-22	CC	TT	GG	AA	CG	AG	GG	CC	GG	GG	AA	TT	GG	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	GG	GG	GG	GG	AA	GG	AA	AA	CC	AG	CC	GG	GG
1._RUQ_1238	__	__	__	__	__	__	__	__	__	CC	__	__	__	GG
2._NA_670	AA	__	__	__	GG	__	__	__	__	CC	__	GG	__	GG
3._NA_670	AA	__	__	__	GG	__	__	__	__	CC	__	GG	__	GG
4._NA_670	AA	__	__	__	GG	__	__	__	__	CC	__	GG	__	GG
5._NA_670	AA	__	__	__	GG	__	__	__	__	CC	__	GG	__	GG
6._RUQ_1238	AA	__	__	__	GG	__	__	__	__	CC	__	GG	__	GG
7._NA_670	AA	__	__	__	GG	__	__	__	__	CC	__	GG	__	GG
8._RUQ_1238	AA	__	__	__	__	__	CC	__	__	CC	__	GG	__	GG
9._GC-05-169-4-22	AA	CC	GG	GG	GG	AA	CC	__	AA	CC	AG	GG	GG	GG
10._GC-05-169-4-22	AA	CC	GG	GG	GG	AA	CC	__	AA	CC	AG	GG	GG	GG
11._GC-05-169-4-22	AA	CC	GG	GG	GG	AA	CC	__	AA	CC	AG	GG	GG	GG
12._GC-05-169-4-22	AA	CC	GG	GG	GG	AA	CC	__	AA	CC	AG	GG	GG	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AC	GG	GG	GG	AA	AA	CC	AG	AA	AA	CC	AA	CC	CC
1._RUQ_1238	AC	__	CC	__	__	__	GG	AG	__	__	__	__	CC	TT
2._NA_670	AC	__	__	CC	__	__	GG	__	__	__	__	__	__	__
3._NA_670	AC	__	__	CC	__	__	GG	__	__	__	__	__	__	__
4._NA_670	AC	__	__	CC	__	__	GG	__	__	__	__	__	__	__
5._NA_670	AC	__	__	CC	__	__	GG	__	__	__	__	__	__	__
6._RUQ_1238	AC	__	__	CC	__	__	GG	__	__	__	__	__	__	__
7._NA_670	AC	__	__	CC	__	__	GG	__	__	__	__	__	__	__
8._RUQ_1238	AC	__	CC	CC	__	__	GG	AG	TT	__	__	TT	CC	__
9._GC-05-169-4-22	AC	CC	CC	CC	AA	AA	GG	AG	TT	TT	GG	TT	CC	GG
10._GC-05-169-4-22	AC	CC	CC	CC	AA	AA	GG	AG	TT	TT	GG	TT	CC	GG
11._GC-05-169-4-22	AC	CC	CC	CC	AA	AA	GG	AG	TT	TT	GG	TT	CC	GG
12._GC-05-169-4-22	AC	CC	CC	CC	AA	AA	GG	AG	TT	TT	GG	TT	CC	GG

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	GG	CG	GG	GG	GG	CC	AG	GG	GG	AA	AA	AG	X_X	X_X
1._RUQ_1238	__	CG	__	__	GG	__	__	__	__	__	__	AG	X_X	X_X
2._NA_670	__	CG	CC	__	__	__	CT	GG	__	AA	TT	AG	X_X	X_X
3._NA_670	__	CG	CC	__	__	__	CT	GG	__	AA	TT	AG	X_X	X_X
4._NA_670	__	CG	CC	__	__	__	CT	GG	__	AA	TT	AG	X_X	X_X
5._NA_670	__	CG	CC	__	__	__	CT	GG	__	AA	TT	AG	X_X	X_X
6._RUQ_1238	__	CG	CC	__	__	__	CT	GG	__	AA	TT	AG	X_X	X_X
7._NA_670	__	CG	CC	__	__	__	CT	GG	__	AA	TT	AG	X_X	X_X
8._RUQ_1238	__	CG	CC	__	GG	CC	__	__	__	__	__	AG	X_X	X_X
9._GC-05-169-4-22	__	CG	CC	CC	GG	CC	CT	GG	CC	AA	TT	AG	X_X	X_X
10._GC-05-169-4-22	__	CG	CC	CC	GG	CC	CT	GG	CC	AA	TT	AG	X_X	X_X
11._GC-05-169-4-22	__	CG	CC	CC	GG	CC	CT	GG	CC	AA	TT	AG	X_X	X_X
12._GC-05-169-4-22	__	CG	CC	CC	GG	CC	CT	GG	CC	AA	TT	AG	X_X	X_X

Input profile: NA_670 RUQ_1238

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

1._NA_670 RUQ_1238

70.6 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

LCT
0.209 Nan
0.711

2._NA_670

54.3 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5422 5 > FP

Dapeng Zhang, 2016

3._NA_670

54.3 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5422 4 > FP

Dapeng Zhang, 2016

4._NA_670

54.3 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5422 3 > FP

Dapeng Zhang, 2016

5._NA_670

54.3 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5422 2 > FP

Dapeng Zhang, 2016

6._NA_670 RUQ_1238

54.3 %
35 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

7._NA_670

52.9 %
35 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A D317 T4

Dapeng Zhang, 2016

8._NA_670 RUQ_1238

51.4 %
37 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

9._NA_670 GC-05-169-4-22

51.3 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

10._NA_670 GC-05-169-4-22

51.3 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

11._NA_670 GC-05-169-4-22

51.3 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

12._NA_670 GC-05-169-4-22

51.3 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998