SNP Profiles of SC 1 [UNK] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AC	AA	CC	AA	AG	GG	CC	AA	GG	GG	AA	AA	CC
1._POUND_7_/B___	__	__	__	__	__	__	GG	__	__	__	__	__	__	__
2._POUND_7_/B___	__	__	__	__	__	__	GG	__	__	__	__	__	__	__
3._POUND_7_/B___	CC	AC	AA	CC	TT	CT	GG	GG	AA	CC	GG	__	TT	GG
4._POUND_7_/B___	CC	AC	AA	CC	TT	CT	GG	GG	AA	CC	GG	TT	TT	GG
5._POUND_7_/B___	CC	AC	AA	CC	TT	CT	GG	GG	AA	CC	GG	TT	TT	GG
6._POUND_7_/B___	CC	AC	AA	CC	TT	CT	GG	GG	AA	CC	GG	TT	TT	GG
7._POUND_7_/B___	CC	AC	AA	CC	TT	CT	GG	GG	AA	CC	GG	TT	TT	GG
8._POUND_7_/B___	CC	AC	AA	CC	TT	CT	GG	GG	AA	CC	GG	TT	TT	GG
9._POUND_7_/B___	CC	AC	AA	CC	TT	CT	GG	GG	AA	CC	GG	TT	TT	GG
10._POUND_7_/B___	CC	AC	__	CC	TT	CT	GG	GG	AA	CC	GG	TT	TT	GG
11._POUND_7_/B___	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__
12._POUND_7_/B___	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__
13._POUND_7_/B___	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__
14._POUND_7_/B___	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__
15._POUND_7_/B___	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__
16._POUND_7_/B___	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__
17._POUND_7_/B___	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__
18._POUND_7_/B___	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__
19._POUND_7_/B___	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__
20._POUND_7_/B___	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__
21._POUND_7_/B___	__	__	__	__	__	CT	__	GG	__	__	GG	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AA	AA	AA	GG	AA	GG	AC	AA	GG	AA	CC	AG
1._POUND_7_/B___	__	TT	__	__	__	__	__	__	AC	__	CC	__	__	__
2._POUND_7_/B___	__	TT	__	__	__	__	__	__	AC	__	CC	__	__	__
3._POUND_7_/B___	TT	TT	TT	TT	AA	GG	TT	CC	AC	TT	CC	AA	GG	CT
4._POUND_7_/B___	TT	TT	TT	TT	AA	GG	TT	CC	AC	TT	CC	AA	GG	CT
5._POUND_7_/B___	TT	TT	TT	TT	AA	GG	TT	CC	AC	TT	CC	AA	GG	CT
6._POUND_7_/B___	TT	TT	TT	TT	AA	GG	TT	CC	AC	TT	CC	AA	GG	CT
7._POUND_7_/B___	TT	TT	TT	TT	AA	GG	TT	CC	AC	TT	CC	AA	GG	CT
8._POUND_7_/B___	TT	TT	TT	TT	AA	GG	TT	CC	AC	TT	CC	AA	GG	CT
9._POUND_7_/B___	TT	TT	TT	TT	AA	GG	TT	CC	AC	TT	CC	AA	GG	CT
10._POUND_7_/B___	TT	TT	TT	TT	AA	GG	TT	CC	AC	TT	CC	AA	GG	CT
11._POUND_7_/B___	__	TT	TT	__	AA	__	TT	__	AC	TT	CC	AA	GG	CT
12._POUND_7_/B___	__	TT	TT	__	AA	__	TT	__	AC	TT	CC	AA	GG	CT
13._POUND_7_/B___	__	TT	TT	__	AA	__	TT	__	AC	TT	CC	AA	GG	CT
14._POUND_7_/B___	__	TT	TT	__	AA	__	TT	__	AC	TT	CC	AA	GG	CT
15._POUND_7_/B___	__	TT	TT	__	AA	__	TT	__	AC	TT	CC	AA	GG	CT
16._POUND_7_/B___	__	TT	TT	__	AA	__	TT	__	AC	TT	CC	AA	GG	CT
17._POUND_7_/B___	__	TT	TT	__	AA	__	TT	__	AC	TT	CC	AA	GG	CT
18._POUND_7_/B___	__	TT	TT	__	AA	__	TT	__	AC	TT	CC	AA	GG	CT
19._POUND_7_/B___	__	TT	TT	__	AA	__	TT	__	AC	TT	CC	AA	GG	CT
20._POUND_7_/B___	__	TT	TT	__	AA	__	TT	__	AC	TT	CC	AG	GG	CT
21._POUND_7_/B___	__	TT	__	TT	__	__	__	CC	AC	TT	CC	AA	GG	CT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	AT	GG	AA	GG	AA	GG	AG	GG	CC	TT	TT	AG	GG
1._POUND_7_/B___	__	__	__	__	__	AA	__	__	__	__	__	__	AG	__
2._POUND_7_/B___	__	__	__	__	__	AA	__	__	__	__	__	__	AG	__
3._POUND_7_/B___	CC	AT	GG	AA	CC	AA	GG	CT	GG	GG	AA	TT	AG	GG
4._POUND_7_/B___	CC	AT	GG	AA	CC	AA	GG	CT	GG	GG	AA	TT	AG	GG
5._POUND_7_/B___	CC	AT	GG	AA	CC	AA	GG	CT	GG	GG	AA	TT	AG	GG
6._POUND_7_/B___	CC	AT	GG	AA	CC	AA	GG	CT	GG	GG	AA	TT	AG	GG
7._POUND_7_/B___	CC	AT	GG	AA	CC	AA	GG	CT	GG	GG	AA	TT	AG	GG
8._POUND_7_/B___	CC	AT	GG	AA	CC	AA	GG	CT	GG	GG	AA	TT	AG	GG
9._POUND_7_/B___	CC	AT	GG	AA	CC	AA	GG	CT	GG	GG	AA	TT	AG	GG
10._POUND_7_/B___	CC	AT	GG	AA	CC	AA	GG	CT	GG	GG	AA	TT	AG	GG
11._POUND_7_/B___	CC	__	__	AA	CC	AA	__	CT	GG	__	__	TT	__	__
12._POUND_7_/B___	CC	__	__	AA	CC	AA	__	CT	GG	__	__	TT	__	__
13._POUND_7_/B___	CC	__	__	AA	CC	AA	__	CT	GG	__	__	TT	__	__
14._POUND_7_/B___	CC	__	__	AA	CC	AA	__	CT	GG	__	__	TT	__	__
15._POUND_7_/B___	CC	__	__	AA	CC	AA	__	CT	GG	__	__	TT	__	__
16._POUND_7_/B___	CC	__	__	AA	CC	AA	__	CT	GG	__	__	TT	__	__
17._POUND_7_/B___	CC	__	__	AA	CC	AA	__	CT	GG	__	__	TT	__	__
18._POUND_7_/B___	CC	__	__	AA	CC	AA	__	CT	GG	__	__	TT	__	__
19._POUND_7_/B___	CC	__	__	AA	CC	AA	__	CT	GG	__	__	TT	__	__
20._POUND_7_/B___	CC	__	__	AA	CC	AA	__	CT	GG	__	__	TT	__	__
21._POUND_7_/B___	__	__	GG	AA	CC	AA	__	CT	__	__	__	__	AG	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	AG	GG	GG	GG	AA	GG	AA	AA	CC	GG	AC	GG	GG
1._POUND_7_/B___	__	__	__	__	__	__	__	__	__	__	__	__	__	GG
2._POUND_7_/B___	__	__	__	__	__	__	__	__	__	__	__	__	__	GG
3._POUND_7_/B___	AA	CT	GG	GG	GG	AA	CC	__	AA	CC	GG	GT	GG	GG
4._POUND_7_/B___	AA	CT	GG	GG	GG	AA	CC	__	AA	CC	GG	GT	GG	GG
5._POUND_7_/B___	AA	CT	GG	GG	GG	AA	CC	__	AA	CC	GG	GT	GG	GG
6._POUND_7_/B___	AA	CT	GG	GG	GG	AA	CC	__	AA	CC	GG	GT	GG	GG
7._POUND_7_/B___	AA	CT	GG	GG	GG	AA	CC	__	AA	CC	GG	GT	GG	GG
8._POUND_7_/B___	AA	CT	GG	GG	GG	AA	CC	__	AA	CC	GG	GT	GG	GG
9._POUND_7_/B___	AA	CT	GG	GG	GG	AA	CC	__	AA	CC	GG	GT	GG	GG
10._POUND_7_/B___	AA	CT	GG	GG	GG	AA	CC	__	AA	CC	GG	GT	GG	GG
11._POUND_7_/B___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG
12._POUND_7_/B___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG
13._POUND_7_/B___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG
14._POUND_7_/B___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG
15._POUND_7_/B___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG
16._POUND_7_/B___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG
17._POUND_7_/B___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG
18._POUND_7_/B___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG
19._POUND_7_/B___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG
20._POUND_7_/B___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG
21._POUND_7_/B___	AA	__	__	__	__	__	CC	__	__	CC	__	GT	__	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AA	GG	GG	AG	AA	AA	CC	GG	AA	AA	CC	AA	AC	CC
1._POUND_7_/B___	AA	__	CC	__	__	__	GG	GG	__	__	__	__	AC	TT
2._POUND_7_/B___	AA	__	CC	__	__	__	GG	GG	__	__	__	__	AC	TT
3._POUND_7_/B___	AA	CC	CC	CT	AA	AA	GG	GG	TT	TT	GG	TT	AC	GG
4._POUND_7_/B___	AA	CC	CC	CT	AA	AA	GG	GG	TT	TT	GG	TT	AC	GG
5._POUND_7_/B___	AA	CC	CC	CT	AA	AA	GG	GG	TT	TT	GG	TT	AC	GG
6._POUND_7_/B___	AA	CC	CC	CT	AA	AA	GG	GG	TT	TT	GG	TT	AC	GG
7._POUND_7_/B___	AA	CC	CC	CT	AA	AA	GG	GG	TT	TT	GG	TT	AC	GG
8._POUND_7_/B___	AA	CC	CC	CT	AA	AA	GG	GG	TT	TT	GG	TT	AC	GG
9._POUND_7_/B___	AA	CC	CC	CT	AA	AA	GG	GG	TT	TT	GG	TT	AC	GG
10._POUND_7_/B___	AA	CC	CC	CT	AA	AA	GG	GG	TT	TT	GG	TT	AC	GG
11._POUND_7_/B___	AA	__	__	CT	__	__	GG	__	__	__	__	__	__	__
12._POUND_7_/B___	AA	__	__	CT	__	__	GG	__	__	__	__	__	__	__
13._POUND_7_/B___	AA	__	__	CT	__	__	GG	__	__	__	__	__	__	__
14._POUND_7_/B___	AA	__	__	CT	__	__	GG	__	__	__	__	__	__	__
15._POUND_7_/B___	AA	__	__	CT	__	__	GG	__	__	__	__	__	__	__
16._POUND_7_/B___	AA	__	__	CT	__	__	GG	__	__	__	__	__	__	__
17._POUND_7_/B___	AA	__	__	CT	__	__	GG	__	__	__	__	__	__	__
18._POUND_7_/B___	AA	__	__	CT	__	__	GG	__	__	__	__	__	__	__
19._POUND_7_/B___	AA	__	__	CT	__	__	GG	__	__	__	__	__	__	__
20._POUND_7_/B___	AA	__	__	CT	__	__	GG	__	__	__	__	__	__	__
21._POUND_7_/B___	AA	__	CC	CT	__	__	GG	GG	TT	__	__	TT	AC	__

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	GG	GG	AG	GG	GG	CC	AG	GG	GG	AA	AG	AG	X_X	X_X
1._POUND_7_/B___	__	CC	__	__	GG	__	__	__	__	__	__	AG	X_X	X_X
2._POUND_7_/B___	__	CC	__	__	GG	__	__	__	__	__	__	AG	X_X	X_X
3._POUND_7_/B___	__	CC	CT	CC	GG	CC	CT	GG	CC	AA	CT	AG	X_X	X_X
4._POUND_7_/B___	__	CC	CT	CC	GG	CC	CT	GG	CC	AA	CT	AG	X_X	X_X
5._POUND_7_/B___	__	CC	CT	CC	GG	CC	CT	GG	CC	AA	CT	AG	X_X	X_X
6._POUND_7_/B___	__	CC	CT	CC	GG	CC	CT	GG	CC	AA	CT	AG	X_X	X_X
7._POUND_7_/B___	__	CC	CT	CC	GG	CC	CT	GG	CC	AA	CT	AG	X_X	X_X
8._POUND_7_/B___	__	CC	CT	CC	GG	CC	CT	GG	CC	AA	CT	AG	X_X	X_X
9._POUND_7_/B___	__	CC	CT	CC	GG	CC	CT	GG	CC	AA	CT	AG	X_X	X_X
10._POUND_7_/B___	__	CC	CT	CC	GG	CC	CT	GG	CC	AA	CT	AG	X_X	X_X
11._POUND_7_/B___	__	CC	CT	__	__	__	CT	GG	__	AA	CT	AG	X_X	X_X
12._POUND_7_/B___	__	CC	CT	__	__	__	CT	GG	__	AA	CT	AG	X_X	X_X
13._POUND_7_/B___	__	CC	CT	__	__	__	CT	GG	__	AA	CT	AG	X_X	X_X
14._POUND_7_/B___	__	CC	CT	__	__	__	CT	GG	__	AA	CT	AG	X_X	X_X
15._POUND_7_/B___	__	CC	CT	__	__	__	CT	GG	__	AA	CT	AG	X_X	X_X
16._POUND_7_/B___	__	CC	CT	__	__	__	CT	GG	__	AA	CT	AG	X_X	X_X
17._POUND_7_/B___	__	CC	CT	__	__	__	CT	GG	__	AA	CT	AG	X_X	X_X
18._POUND_7_/B___	__	CC	CT	__	__	__	CT	GG	__	AA	CT	AG	X_X	X_X
19._POUND_7_/B___	__	CC	CT	__	__	__	CT	GG	__	AA	CT	AG	X_X	X_X
20._POUND_7_/B___	__	CC	CT	__	__	__	CT	GG	__	AA	CT	AG	X_X	X_X
21._POUND_7_/B___	__	CC	__	__	__	CC	__	__	__	__	__	AG	X_X	X_X

Input profile: POUND_7_/B RUQ_24

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

1._POUND_7_/B RUQ_24

62.5 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.185 IMC
0.266 Nan
0.488

2._POUND_7_/B RUQ_24B

62.5 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

3._POUND_7_/B GC-01-114-6-11

50.6 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP4

4._POUND_7_/B GC-01-114-6-11

50 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

5._POUND_7_/B GC-01-114-6-11

50 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

6._POUND_7_/B GC-01-114-6-11

50 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

7._POUND_7_/B GC-01-114-6-11

50 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

8._POUND_7_/B GC-01-114-6-11

50 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

9._POUND_7_/B GC-01-114-6-11

50 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

10._POUND_7_/B GC-01-114-6-11

49.4 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

11._POUND_7_/B

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1611 9

Dapeng Zhang, 2016

12._POUND_7_/B

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1611 4 > FP

Dapeng Zhang, 2016

13._POUND_7_/B

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1611 11 > F

Dapeng Zhang, 2016

14._POUND_7_/B

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1611 10 > F

Dapeng Zhang, 2016

15._POUND_7_/B

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1611 1 > FP

Dapeng Zhang, 2016

16._POUND_7_/B

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1611 13

Dapeng Zhang, 2016

17._POUND_7_/B

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1611 3

Dapeng Zhang, 2016

18._POUND_7_/B

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1611 2

Dapeng Zhang, 2016

19._POUND_7_/B

48.6 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F407 T3

Dapeng Zhang, 2016

20._POUND_7_/B RUQ_24

47.1 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

21._POUND_7_/B RUQ_24

45.7 %
35 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998