SNP Profiles of SC 1 [UNK] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AC	AA	AA	AA	GG	AG	CC	AA	GG	GG	AA	AA	AC
1._SCA_9___	__	__	__	__	__	__	AG	__	__	__	__	__	__	__
2._SCA_9___	__	__	__	__	__	CC	__	__	__	__	GG	__	__	__
3._SCA_9___	__	__	__	__	__	CC	__	GG	__	__	GG	__	__	__
4._SCA_9___	__	__	__	__	__	CT	__	__	__	__	AG	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AA	AG	GG	AA	GG	AC	AA	GG	AA	CC	GG	GG
1._SCA_9___	__	TT	__	__	__	__	__	AC	__	CC	__	__	__	__
2._SCA_9___	__	__	__	__	__	__	CC	AC	__	GG	__	__	CC	__
3._SCA_9___	__	TT	__	CT	__	__	CC	AC	TT	CC	AA	GG	CC	__
4._SCA_9___	__	__	__	__	__	__	CT	CC	__	GG	__	__	CT	__

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AT	GG	AA	CG	AG	GG	AG	GG	CC	TT	AT	GG	GG	AT
1._SCA_9___	__	__	__	__	AG	__	__	__	__	__	__	GG	__	__
2._SCA_9___	__	GG	AA	CG	AG	__	__	__	__	__	__	__	GG	AT
3._SCA_9___	__	GG	AA	CG	AG	__	CT	__	__	__	__	GG	GG	AT
4._SCA_9___	__	__	__	GG	AG	__	__	__	__	__	__	__	AG	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AG	GG	GG	GG	AA	GG	AA	AA	CC	AA	CC	GG	GG	AA
1._SCA_9___	__	__	__	__	__	__	__	__	CC	__	__	__	GG	AA
2._SCA_9___	CT	__	__	__	__	CC	__	__	__	__	__	__	GG	AA
3._SCA_9___	__	__	__	__	__	CC	__	__	CC	__	GG	__	GG	AA
4._SCA_9___	CC	__	__	__	__	CC	__	__	__	__	__	__	CG	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	GG	AG	AA	AA	CC	GG	AA	AA	AC	AA	AC	CC	GG
1._SCA_9___	__	CC	__	__	__	GG	GG	__	__	__	__	AC	TT	__
2._SCA_9___	__	CC	__	__	__	__	__	__	TT	__	__	__	__	GG
3._SCA_9___	__	CC	CT	__	__	GG	GG	TT	__	__	TT	AC	__	__
4._SCA_9___	__	CT	__	__	__	__	__	__	TT	__	__	__	__	AA

	71	72	73	74	75	76	77	78	79	80	81
_Input profile	GG	AG	GG	GG	CC	AG	GG	GG	AA	AG	AG	X_X	X_X	X_X
1._SCA_9___	CC	__	__	GG	__	__	__	__	__	__	AG	X_X	X_X	X_X
2._SCA_9___	GG	CT	__	__	__	__	__	__	__	CT	__	X_X	X_X	X_X
3._SCA_9___	CC	TT	__	__	CC	__	__	__	__	__	AG	X_X	X_X	X_X
4._SCA_9___	GG	CT	__	__	__	__	__	__	__	CT	__	X_X	X_X	X_X

Input profile: SCA_9 RUQ_1064

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Mars, 2018

1._SCA_9 RUQ_1064

64.7 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

View Data

IMC
0.160 Nan
0.605 Par
0.065 Pur
0.089

2._SCA_9 RUQ_1064

59.1 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

3._SCA_9 RUQ_1064

47.2 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._SCA_9 SCA9

30 %
20 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1383	20	TcSNP1414
21	TcSNP1439	22	TcSNP144	23	TcSNP1442	24	TcSNP1458	25	TcSNP1484
26	TcSNP150	27	TcSNP151	28	TcSNP1520	29	TcSNP154	30	TcSNP174
31	TcSNP193	32	TcSNP226	33	TcSNP230	34	TcSNP240	35	TcSNP242
36	TcSNP25	37	TcSNP28	38	TcSNP316	39	TcSNP32	40	TcSNP329
41	TcSNP364	42	TcSNP372	43	TcSNP413	44	TcSNP418	45	TcSNP42
46	TcSNP429	47	TcSNP430	48	TcSNP448	49	TcSNP497	50	TcSNP521
51	TcSNP529	52	TcSNP547	53	TcSNP560	54	TcSNP561	55	TcSNP577
56	TcSNP591	57	TcSNP60	58	TcSNP602	59	TcSNP619	60	TcSNP653
61	TcSNP689	62	TcSNP723	63	TcSNP731	64	TcSNP75	65	TcSNP751
66	TcSNP776	67	TcSNP799	68	TcSNP823	69	TcSNP836	70	TcSNP860
71	TcSNP872	72	TcSNP891	73	TcSNP894	74	TcSNP899	75	TcSNP90
76	TcSNP917	77	TcSNP929	78	TcSNP944	79	TcSNP953	80	TcSNP994
81	TcSNP998

SNP Profiles of SC 1 [UNK] View Data

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Input profile: SCA_9 RUQ_1064

1._SCA_9 RUQ_1064

64.7 % 17 shared markers

2._SCA_9 RUQ_1064

59.1 % 22 shared markers

3._SCA_9 RUQ_1064

47.2 % 36 shared markers

4._SCA_9 SCA9

30 % 20 shared markers

64.7 %
17 shared markers

59.1 %
22 shared markers

47.2 %
36 shared markers

30 %
20 shared markers