SNP Profiles of CATONGO-01   View Data

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_Input profile
CCAAAAAAAAGGAACCAAGGAAAAGGCC
1._GC-08-277-8-49
CCAAAAAAAAGGAACCAAGGAAAAAAAA
2._GC-08-277-8-49
CCAAAAAATTCCAAGGAACCAATTCCGG
3._GC-08-277-8-49
CCAAAAAATTCCAAGGAACCAATTCCGG
4._GC-08-277-8-49
CCAAAAAATTCCAAGGAACCAATTCCGG
5._GC-08-277-8-49
CCAAAAAATTCCAAGGAACCAATTCCGG
6._GC-08-109-3-08
CCAAAAAATTCCAAGGAACCAATTCCGG
7._GC-08-109-3-08
CCAAAAAATTCCAAGGAACCAATTCCGG
8._GC-08-109-3-08
CCAAAAAATTCCAAGGAACCAATTCCGG
9._GC-08-278-8-50
CCAAAAAATTCCAAGGAACCAATTTTTT
10._GC-08-277-8-49
CCAAAAAATTCCAAGGAACCAATTCCGG
11._GC-08-277-8-49
CCAAAAAATTCCAAGGAACCAATTTTTT
12._GC-08-278-8-50
CCAAAAAATTCCAAGGAACCAATTTTTT
13._GC-08-278-8-50
CCAAAAAATTCCAAGGAACCAATTTTTT
14._GC-08-278-8-50
CCAAAAAATTCCAAGGAACCAATTTTTT
15._GC-08-278-8-50
CCAAAAAATTCCAAGGAACCAATTTTTT
16._GC-08-277-8-49
CCAAAAAATTCCAAGGAACCAATTTTTT
17._GC-08-277-8-49
CCAAAAAATTCCAAGGAACCAATTCCGG
18._GC-08-277-8-49
CCAAAAAATTCCAAGGAACCAATTCCGG
19._GC-08-278-8-50
CCAAAAAATTCCAAGGAACCAATTCCGG
 1516171819202122232425262728
_Input profile
GGAAGGAAAAGGAAAAAAGGCCGGAAGG
1._GC-08-277-8-49
AAAAGGAAAAGGAAAAACAACCGGAAGG
2._GC-08-277-8-49
CC_CCTTAAGGTTTTAACCGGGGTTCC
3._GC-08-277-8-49
CC_CCTTAA_TTTTAACCGGGGTTCC
4._GC-08-277-8-49
CCTTCCTTAAGGTTTTAACCGGGGTTCC
5._GC-08-277-8-49
CCTTCCTTAAGGTTTTAACCGGGGTTCC
6._GC-08-109-3-08
CCTTCCTTAAGGTTTTAACCGGGGTTCC
7._GC-08-109-3-08
CCTTCCTTAAGGTTTTAACCGGGGTTCC
8._GC-08-109-3-08
CCTTCCTTAAGGTTTTAACCGGGGTTCC
9._GC-08-278-8-50
TTTTCCTTAAGGTTTTACTTGGGGTTCC
10._GC-08-277-8-49
CC_CCTTAAGGTTTTAACCGGGGTTCC
11._GC-08-277-8-49
TTTTCCTTAAGGTTTTACTTGGGGTTCC
12._GC-08-278-8-50
TTTTCCTTAAGGTTTTACTTGGGGTTCC
13._GC-08-278-8-50
TTTTCCTTAAGGTTTTACTTGGGGTTCC
14._GC-08-278-8-50
TTTTCCTTAAGGTTTTACTTGGGGTTCC
15._GC-08-278-8-50
TTTTCCTTAAGGTTTTACTTGGGGTTCC
16._GC-08-277-8-49
TTTTCCTTAAGGTTTTACTTGGGGTTCC
17._GC-08-277-8-49
CCTTCCTTAAGGTTTTAACCGGGGTTCC
18._GC-08-277-8-49
CCTTCCTTAAGGTTTTAACCGGGGTTCC
19._GC-08-278-8-50
CCTTCCTTAAGGTTTTAACCGGGGTTCC
 2930313233343536373839404142
_Input profile
AATTGGAAGGAAGGGGGGTTTTGGGGAA
1._GC-08-277-8-49
AATTGGAAGGAAGGGGGGTTTTGGGGAA
2._GC-08-277-8-49
TTAAGGAACCAAGGCCGGAATTGGGGAA
3._GC-08-277-8-49
TTAAGGAACCAAGGCCGGAATTGGGGAA
4._GC-08-277-8-49
TTAAGGAACCAAGGCCGGAATTGGGGAA
5._GC-08-277-8-49
TTAAGGAACCAAGGCCGGAATTGGGGAA
6._GC-08-109-3-08
TTAAGGAACCAAGGCCGGAATTGGGGAA
7._GC-08-109-3-08
TTAAGGAACCAAGGCCGGAATTGGGGAA
8._GC-08-109-3-08
TTAAGGAACCAAGGCCGGAATTGGGGAA
9._GC-08-278-8-50
TTAAGGAACCAAGGCCGGAATTGGGGAA
10._GC-08-277-8-49
TTAAGGAACCAAGGCCGGAATTGGGGAA
11._GC-08-277-8-49
TTAAGGAACCAAGGCCGGAATTGGGGAA
12._GC-08-278-8-50
TTAAGGAACCAAGGCCGGAATTGGGGAA
13._GC-08-278-8-50
TTAAGGAACCAAGGCCGGAATTGGGGAA
14._GC-08-278-8-50
TTAAGGAACCAAGGCCGGAATTGGGGAA
15._GC-08-278-8-50
TTAAGGAACCAAGGCCGGAATTGGGGAA
16._GC-08-277-8-49
TTAAGGAACCAAGGCCGGAATTGGGGAA
17._GC-08-277-8-49
TTAAGGAACCAAGGCCGGAATTGGGGAA
18._GC-08-277-8-49
TTAAGGAACCAAGGCCGGAATTGGGGAA
19._GC-08-278-8-50
TTAA_AACCAAGGCCGGAATTGGGGAA
 4344454647484950515253545556
_Input profile
AAGGGGGGTTGGAACCCCGGAAAACCAA
1._GC-08-277-8-49
AGGGGGGGTTGGAACCCCGGAAAACCAA
2._GC-08-277-8-49
TTGGGGGGTTCC_CCCCGGTTAACCAA
3._GC-08-277-8-49
TTGGGGGGTTCC_CCCCGGTTAACCAA
4._GC-08-277-8-49
TTGGGGGGTTCC_CCCCGGTTAACCAA
5._GC-08-277-8-49
TTGGGGGGTTCC_CCCCGGTTAACCAA
6._GC-08-109-3-08
TTGGGGGGTTCC_CCCCGGTTAACCAA
7._GC-08-109-3-08
TTGGGGGGTTCC_CCCCGGTTAACCAA
8._GC-08-109-3-08
TTGGGGGGTTCC_CCCCGGTTAACCAA
9._GC-08-278-8-50
CTGGGGGGTTCC_CCCCGGTTAACCAA
10._GC-08-277-8-49
TTGGGGGGTTCC_CC_GGTTAACCAA
11._GC-08-277-8-49
CTGGGGGGTTCC_CCCCGGTTAACCAA
12._GC-08-278-8-50
CTGGGGGGTTCC_CCCCGGTTAACCAA
13._GC-08-278-8-50
CTGGGGGGTTCC_CCCCGGTTAACCAA
14._GC-08-278-8-50
CTGGGGGGTTCC_CCCCGGTTAACCAA
15._GC-08-278-8-50
CTGGGGGGTTCC_CCCCGGTTAACCAA
16._GC-08-277-8-49
CTGGGGGGTTCC_CCCCGGTTAACCAA
17._GC-08-277-8-49
TTGGGGGGTTCC_CCCCGGTTAACCAA
18._GC-08-277-8-49
TTGGGGGGTTCC_CCCCGGTTAACCAA
19._GC-08-278-8-50
TTGGGGGGTTCC_CC_GGTTAACCAA
 5758596061626364656667686970
_Input profile
GGAAAAGGAACCGGAAAAAAAAAACCGG
1._GC-08-277-8-49
GGAAAAGGAACCGGAAAAAAAAAACCGG
2._GC-08-277-8-49
CCTTTTAAAAGGGGTTTTTTTTAA__
3._GC-08-277-8-49
CCTTTTAAAAGGGGTTTTTTTTAAGG_
4._GC-08-277-8-49
CCTTTTAAAAGGGGTTTTTTTTAAGG_
5._GC-08-277-8-49
CCTTTTAAAAGGGGTTTTTTTTAAGG_
6._GC-08-109-3-08
CCTTTTAAAAGGGGTTTTTTTTAAGG_
7._GC-08-109-3-08
CCTTTTAAAAGGGGTTTTTTTTAAGG_
8._GC-08-109-3-08
CCTTTTAAAAGGGGTTTTTTTTAAGG_
9._GC-08-278-8-50
CCTTTTAAAAGGGGTTTT_TTAAGG_
10._GC-08-277-8-49
CCTTTTAAAAGGGGTTTTTTTTAAGG_
11._GC-08-277-8-49
CCTTTTAAAAGGGGTTTTTTTTAAGG_
12._GC-08-278-8-50
CCTTTTAAAAGGGGTTTTTTTTAAGG_
13._GC-08-278-8-50
CCTTTTAAAAGGGGTTTTTTTTAAGG_
14._GC-08-278-8-50
CCTTTTAAAAGGGGTTTTTTTTAAGG_
15._GC-08-278-8-50
CCTTTTAAAAGGGGTTTTTTTTAAGG_
16._GC-08-277-8-49
CCTTTTAAAAGGGGTTTTTTTTAAGG_
17._GC-08-277-8-49
CCTTTTAAAAGGGGTTTTTTTTAAGG_
18._GC-08-277-8-49
CCTTTTAAAAGGGGTTTTTTTTAAGG_
19._GC-08-278-8-50
CCTTTTAAAAGGGGTTTTTTTTAAGG_
 7172737475767778798081   
_Input profile
CCGGGGAACCAACCGGAAAAGGX_XX_XX_X
1._GC-08-277-8-49
CCGGGGAACCAACCGGAAAAGGX_XX_XX_X
2._GC-08-277-8-49
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
3._GC-08-277-8-49
GGCCCCAACC_CCCCAATTGGX_XX_XX_X
4._GC-08-277-8-49
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
5._GC-08-277-8-49
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
6._GC-08-109-3-08
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
7._GC-08-109-3-08
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
8._GC-08-109-3-08
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
9._GC-08-278-8-50
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
10._GC-08-277-8-49
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
11._GC-08-277-8-49
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
12._GC-08-278-8-50
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
13._GC-08-278-8-50
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
14._GC-08-278-8-50
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
15._GC-08-278-8-50
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
16._GC-08-277-8-49
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
17._GC-08-277-8-49
GGCCCCAACCTTCCCC_TTGGX_XX_XX_X
18._GC-08-277-8-49
GGCCCC_CCTTCCCCAATTGGX_XX_XX_X
19._GC-08-278-8-50
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X

Input profile: CATONGO_1 GC-08-109-3-8

 
Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._CATONGO_1 GC-08-277-8-49

93.8 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._CATONGO_1 GC-08-277-8-49

49.4 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

3._CATONGO_1 GC-08-277-8-49

48.7 %
76 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._CATONGO_1 GC-08-277-8-49

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._CATONGO_1 GC-08-277-8-49

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP4
 Mars, 2018

6._CATONGO_1 GC-08-109-3-08

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._CATONGO_1 GC-08-109-3-08

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

8._CATONGO_1 GC-08-109-3-08

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._CATONGO_1 GC-08-278-8-50

48.1 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._CATONGO_1 GC-08-277-8-49

48.1 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

11._CATONGO_1 GC-08-277-8-49

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._CATONGO_1 GC-08-278-8-50

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._CATONGO_1 GC-08-278-8-50

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._CATONGO_1 GC-08-278-8-50

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._CATONGO_1 GC-08-278-8-50

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._CATONGO_1 GC-08-277-8-49

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

17._CATONGO_1 GC-08-277-8-49

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

18._CATONGO_1 GC-08-277-8-49

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._CATONGO_1 GC-08-278-8-50

46.8 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998