SNP Profiles of EQX 69 [EQX]   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACAAAAACAAAGGGCCAAAGGGAAAGAC
1._RUQ_100
ACAAAAACAAAGGGCCAAAGGGAAAGAC
2._RUQ_100
____________GG______________
3._RUQ_100B
____________GG______________
4._GC-01-008-1-08
ACAAAAACTTCTGGGGAACTGGTT__GT
5._EQX_69_[EQX]
__________CTGG__AA__________
6._EQX_69_[EQX]
__________CTGG__AA__________
7._EQX_69_[EQX]
__________CTGG__AA__________
8._EQX_69_[EQX]
__________CTGG__AA__________
9._EQX_69_[EQX]
__________CTGG__AA__________
10._EQX_69_[EQX]
__________CTGG__AA__________
11._EQX_69_[EQX]
__________CTGG__AA__________
12._EQX_69_[EQX]
__________CTGG__AA__________
13._GC-01-008-1-08
ACAAAAACTTCTGGGGAACTGGTTCTGT
14._GC-01-008-1-08
ACAAAAACTTCTGGGGAACTGGTTCTGT
15._GC-01-008-1-08
ACAAAAACTTCTGGGGAACTGGTTCTGT
16._GC-01-008-1-08
ACAAAAACTTCTGGGGAACTGGTTCTGT
17._GC-01-008-1-08
ACAAAAACTTCTGGGGAACTGGTTCTGT
18._GC-01-008-1-08
ACAAAAACTTCTGGGGAACTGGTTCTGT
19._GC-01-008-1-08
ACAAAAACTTCTGGGGAACT__TTCTGT
20._GC-01-008-1-08
ACAAAAACTTCTGGGGAACTGGTTCTGT
21._EQX_69_[EQX]
__________CTGG__AA__________
22._RUQ_100
__________CTGG__AA__________
23._RUQ_100
__________CT__GG____GG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGAAAAAACCAGAAAACCAACGAACCAG
1._RUQ_100
AGAAAAAACCAGAAAACCAACGAACCAG
2._RUQ_100
__TT____________CC__CG______
3._RUQ_100B
__TT____________CC__CG______
4._GC-01-008-1-08
CTTTTTTTCCAGTTTTCCTTCGAAGGCT
5._EQX_69_[EQX]
__TTTT__CC__TT__CCTTCGAAGGCT
6._EQX_69_[EQX]
__TTTT__CC__TT__CCTTCGAAGGCT
7._EQX_69_[EQX]
__TTTT__CC__TT__CCTTCGAAGGCT
8._EQX_69_[EQX]
__TTTT__CC__TT__CCTTCGAAGGCT
9._EQX_69_[EQX]
__TTTT__CC__TT__CCTTCGAAGGCT
10._EQX_69_[EQX]
__TTTT__CC__TT__CCTTCGAAGGCT
11._EQX_69_[EQX]
__TTTT__CC__TT__CCTTCGAAGGCT
12._EQX_69_[EQX]
__TTTT__CC__TT__CCTTCGAAGGCT
13._GC-01-008-1-08
CTTTTTTTCCAGTTTTCCTTCGAAGGCT
14._GC-01-008-1-08
CTTTTTTTCCAGTTTTCCTTCGAAGGCT
15._GC-01-008-1-08
CTTTTTTTCCAGTTTTCCTTCGAAGGCT
16._GC-01-008-1-08
CTTTTTTTCCAGTTTTCCTTCGAAGGCT
17._GC-01-008-1-08
CTTTTTTTCCAGTTTTCCTTCGAAGGCT
18._GC-01-008-1-08
CTTTTTTTCCAGTTTTCCTTCGAAGGCT
19._GC-01-008-1-08
CTTTTTTTCCAGTTTTCCTTCGAAGGCT
20._GC-01-008-1-08
CTTTTTTTCCAGTTTT__TTCGAAGGCT
21._EQX_69_[EQX]
__TTTT__CC__TT____TTCGAAGGCT
22._RUQ_100
__TTTT__CC__TT__CCTTCGAGGGCT
23._RUQ_100
__TT__TT______TTCCTTCGAAGGCT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AGTTAGAAGGAAGGAGGGACATATAAGG
1._RUQ_100
AGTTAGAAGGAAGGAGGGACATATAAGG
2._RUQ_100
__________AA____________AA__
3._RUQ_100B
__________AA____________AA__
4._GC-01-008-1-08
CTAAAGAACCAAGGCTGGGTATATAAGG
5._EQX_69_[EQX]
CT____AACCAA__CTGG____AT____
6._EQX_69_[EQX]
CT____AACCAA__CTGG____AT____
7._EQX_69_[EQX]
CT____AACCAA__CTGG____AT____
8._EQX_69_[EQX]
CT____AACCAA__CTGG____AT____
9._EQX_69_[EQX]
CT____AACCAA__CTGG____AT____
10._EQX_69_[EQX]
CT____AACCAA__CTGG____AT____
11._EQX_69_[EQX]
CT____AACCAA__CTGG____AT____
12._EQX_69_[EQX]
CT____AACCAA__CTGG____AT____
13._GC-01-008-1-08
CTAAAGAACCAAGGCTGGGTATATAAGG
14._GC-01-008-1-08
CTAAAGAACCAAGGCTGGGTATATAAGG
15._GC-01-008-1-08
CTAAAGAACCAAGGCTGGGTATATAAGG
16._GC-01-008-1-08
CTAAAGAACCAAGGCTGGGTATATAAGG
17._GC-01-008-1-08
CTAAAGAACCAAGGCTGGGTATATAAGG
18._GC-01-008-1-08
CTAAAGAACCAAGGCTGGGTATATAAGG
19._GC-01-008-1-08
CTAAAGAACCAAGGCTGGGTATATAAGG
20._GC-01-008-1-08
CTAAAG__CCAAGGCTGGGTATATAAGG
21._EQX_69_[EQX]
CT______CCAA__CTGG____AT____
22._RUQ_100
CT____AACCAA__CTGG____AT____
23._RUQ_100
____AGAACCAA__CT________AAGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGAAGGGGAACGAAACCCAAACAGCG
1._RUQ_100
AAGGAAGGGGAACGAAACCCAAACAGCG
2._RUQ_100
__________________CC______CG
3._RUQ_100B
__________________CC______CG
4._GC-01-008-1-08
AACCAAGGGGAACG__ACCCAAGTAGCG
5._EQX_69_[EQX]
AA______GG________CC__GT__CG
6._EQX_69_[EQX]
AA______GG________CC__GT__CG
7._EQX_69_[EQX]
AA______GG________CC__GT__CG
8._EQX_69_[EQX]
AA______GG________CC__GT__CG
9._EQX_69_[EQX]
AA______GG________CC__GT__CG
10._EQX_69_[EQX]
AA______GG________CC__GT__CG
11._EQX_69_[EQX]
AA______GG________CC__GT__CG
12._EQX_69_[EQX]
AA______GG________CC__GT__CG
13._GC-01-008-1-08
AACCAAGGGGAACG__ACCCAAGTAGCG
14._GC-01-008-1-08
AACCAAGGGGAACG__ACCCAAGTAGCG
15._GC-01-008-1-08
AACCAAGGGGAACG__ACCCAAGTAGCG
16._GC-01-008-1-08
AACCAAGGGGAACG__ACCCAAGTAGCG
17._GC-01-008-1-08
AACCAAGGGGAACG__ACCCAAGTAGCG
18._GC-01-008-1-08
AACCAAGGGG__CG__ACCCAAGTAGCG
19._GC-01-008-1-08
AACCAAGGGGAACG__ACCCAAGTAGCG
20._GC-01-008-1-08
AACCAAGGGGAACG__ACCCAAGTAGCG
21._EQX_69_[EQX]
AA______GG________CC__GT__CG
22._RUQ_100
AA______AG________CC__GT__CG
23._RUQ_100
AA__________CC____CC__GT__CG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCGGAGAGAAAACCAGAAACACACACGG
1._RUQ_100
CCGGAGAGAAAACCAGAAACACACACGG
2._RUQ_100
CC__CT______GGAG________ACCT
3._RUQ_100B
CC__CT______GGAG________ACCT
4._GC-01-008-1-08
CCCCCTCTAAAAGGAGTTGTGTGTACCC
5._EQX_69_[EQX]
CC____CT____GG______________
6._EQX_69_[EQX]
CC____CT____GG______________
7._EQX_69_[EQX]
CC____CT____GG______________
8._EQX_69_[EQX]
CC____CT____GG______________
9._EQX_69_[EQX]
CC____CT____GG______________
10._EQX_69_[EQX]
CC____CT____GG______________
11._EQX_69_[EQX]
CC____CT____GG______________
12._EQX_69_[EQX]
CC____CT____GG______________
13._GC-01-008-1-08
CCCCCTCTAAAAGGAGTTGTGTGTACCC
14._GC-01-008-1-08
CCCCCTCTAAAAGGAGTTGTGTGTACCC
15._GC-01-008-1-08
CCCCCTCTAAAAGGAGTTGTGTGTACCC
16._GC-01-008-1-08
CCCCCTCTAAAAGGAGTTGTGTGTACCC
17._GC-01-008-1-08
CCCCCTCTAAAAGGAGTTGTGTGTACCC
18._GC-01-008-1-08
CCCCCTCTAAAAGGAGTTGTGTGTACCC
19._GC-01-008-1-08
CCCCCTCTAAAAGGAGTTGTGTGTACCC
20._GC-01-008-1-08
CCCCCTCTAAAAGGAGTTGTGTGTACCC
21._EQX_69_[EQX]
CC____CT____GG______________
22._RUQ_100
CC____CT____GG______________
23._RUQ_100
CC__CTCT____GGAGTT____GTAC__
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCGGGGGAGCCAGGGGGATAAAGX_XX_X
1._RUQ_100
GGCGGGGGAGCCAGGGGGATAAAGX_XX_X
2._RUQ_100
__CG____AG____________AGX_XX_X
3._RUQ_100B
__CG____AG____________AGX_XX_X
4._GC-01-008-1-08
__CGCCCCAGCCCTGGCCATTTAGX_XX_X
5._EQX_69_[EQX]
__CGCC______CTGG__ATTTAGX_XX_X
6._EQX_69_[EQX]
__CGCC______CTGG__ATTTAGX_XX_X
7._EQX_69_[EQX]
__CGCC______CTGG__ATTTAGX_XX_X
8._EQX_69_[EQX]
__CGCC______CTGG__ATTTAGX_XX_X
9._EQX_69_[EQX]
__CGCC______CTGG__ATTTAGX_XX_X
10._EQX_69_[EQX]
__CGCC______CTGG__ATTTAGX_XX_X
11._EQX_69_[EQX]
__CGCC______CTGG__ATTTAGX_XX_X
12._EQX_69_[EQX]
__CGCC______CTGG__ATTTAGX_XX_X
13._GC-01-008-1-08
__CGCCCCAGCCCTGGCCATTTAGX_XX_X
14._GC-01-008-1-08
__CGCCCCAGCCCTGGCCATTTAGX_XX_X
15._GC-01-008-1-08
__CGCCCCAGCCCTGGCCATTTAGX_XX_X
16._GC-01-008-1-08
__CGCCCCAGCCCTGGCCATTTAGX_XX_X
17._GC-01-008-1-08
__CGCCCCAGCCCTGGCCATTTAGX_XX_X
18._GC-01-008-1-08
__CGCCCCAGCCCTGGCCATTTAGX_XX_X
19._GC-01-008-1-08
__CGCCCCAGCCCTGGCCATTTAGX_XX_X
20._GC-01-008-1-08
__CGCCCCAGCCCTGGCCATTTAGX_XX_X
21._EQX_69_[EQX]
__CGCC______CTGG__ATTTAGX_XX_X
22._RUQ_100
__CGCC______CTGG__ATTTAGX_XX_X
23._RUQ_100
__CGCC____CC__________AGX_XX_X

Input profile: EQX_69_[EQX] GC-01-8-1-8

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 6, Tree: 10 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

1._EQX_69_[EQX] RUQ_100

identical
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._EQX_69_[EQX] RUQ_100

76.5 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

3._EQX_69_[EQX] RUQ_100B

76.5 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

4._EQX_69_[EQX] GC-01-008-1-08

54.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._EQX_69_[EQX]

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 1
 Dapeng Zhang, 2016

6._EQX_69_[EQX]

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 2
 Dapeng Zhang, 2016

7._EQX_69_[EQX]

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 3
 Dapeng Zhang, 2016

8._EQX_69_[EQX]

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 12
 Dapeng Zhang, 2016

9._EQX_69_[EQX]

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 16
 Dapeng Zhang, 2016

10._EQX_69_[EQX]

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 10 > F
 Dapeng Zhang, 2016

11._EQX_69_[EQX]

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 14 > F
 Dapeng Zhang, 2016

12._EQX_69_[EQX]

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 7 > FP
 Dapeng Zhang, 2016

13._EQX_69_[EQX] GC-01-008-1-08

53.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

14._EQX_69_[EQX] GC-01-008-1-08

53.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

15._EQX_69_[EQX] GC-01-008-1-08

53.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

16._EQX_69_[EQX] GC-01-008-1-08

53.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

17._EQX_69_[EQX] GC-01-008-1-08

53.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

18._EQX_69_[EQX] GC-01-008-1-08

53.2 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

19._EQX_69_[EQX] GC-01-008-1-08

53.2 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

20._EQX_69_[EQX] GC-01-008-1-08

52.6 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

21._EQX_69_[EQX]

51.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 9 > FP
 Dapeng Zhang, 2016

22._EQX_69_[EQX] RUQ_100

51.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

23._EQX_69_[EQX] RUQ_100

51.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998