SNP Profiles of GU 123 /V   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCACGGCCAAGGGGCCAAGGGGAAGGAA
1._GU_133_/C___
CCACGGCCAAGGGGCCAAGGGGAAGGAA
2._GU_133_/C___
____________GG______________
3._GU_133_/C___
__________CC________GG______
4._GU_133_/C___
__________CCGG__AA__________
5._GU_133_/C___
__________CCGG__AA__________
6._GU_133_/C___
__________CCGG__AA__________
7._GU_133_/C___
__________CCGG__AA__________
8._GU_133_/C___
__________CCGG__AA__________
9._GU_133_/C___
__________CCGG__AA__________
10._GU_133_/C___
__________CCGG__AA__________
11._GU_133_/C___
__________CCGG__AA__________
12._GU_133_/C___
__________CCGG__AA__________
13._GU_133_/C___
__________CCGG__AA__________
14._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
15._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
16._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
17._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
18._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
19._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
20._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
21._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
22._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
23._GU_133_/C___
__________CCGG__AA__________
24._GU_133_/C___
__________CCGG__AA__________
25._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
26._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
27._GU_133_/C___
__________CC__GG____GG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAAGGAAGGAAGGCGGGAAAAGG
1._GU_133_/C___
AAAAAAAAGGAAGGAAGGCGGGAAAAGG
2._GU_133_/C___
__TT__________AA__CG________
3._GU_133_/C___
____________CCAA__CG____TT__
4._GU_133_/C___
____TT________AACCCGGGTTTTCC
5._GU_133_/C___
____TT____TT__AACCCGGGTTTTCC
6._GU_133_/C___
__TTTT____TT__AACCCGGGTTTTCC
7._GU_133_/C___
__TTTT____TT__AACCCGGGTTTTCC
8._GU_133_/C___
__TTTT____TT__AACCCGGGTTTTCC
9._GU_133_/C___
__TTTT____TT__AACCCGGGTTTTCC
10._GU_133_/C___
__TTTT____TT__AACCCGGGTTTTCC
11._GU_133_/C___
__TTTT____TT__AACCCGGGTTTTCC
12._GU_133_/C___
__TTTT____TT__AACCCGGGTTTTCC
13._GU_133_/C___
__TTTT____TT__AACCCGGGGTTTCC
14._GU_133_/C___
TT__TTTT____CCAACCCGGGTTTTCC
15._GU_133_/C___
TT__TTTTGGTTCCAACCCGGGTTTTCC
16._GU_133_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
17._GU_133_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
18._GU_133_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
19._GU_133_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
20._GU_133_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
21._GU_133_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
22._GU_133_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
23._GU_133_/C___
__TTTT____TT__AACCCGGGTTTTCC
24._GU_133_/C___
__TTTT____TT__AACCCGGGTTTTCC
25._GU_133_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
26._GU_133_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
27._GU_133_/C___
__TT__TT____CCAACCCGGGTTTT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGAAGGGGGGGGGGTTATGGGGAAAA
1._GU_133_/C___
TTGGAAGGGGGGGGGGTTATGGGGAAAA
2._GU_133_/C___
________GG__________GG______
3._GU_133_/C___
__GGAAGGGG____________GGAATT
4._GU_133_/C___
____AACC____CCGG__AT____AA__
5._GU_133_/C___
____AACCGG__CCGG__AT____AA__
6._GU_133_/C___
____AACCGG__CCGG__AT____AA__
7._GU_133_/C___
____AACCGG__CCGG__AT____AA__
8._GU_133_/C___
____AACCGG__CCGG__AT____AA__
9._GU_133_/C___
____AACCGG__CCGG__AT____AA__
10._GU_133_/C___
____AACCGG__CCGG__AT____AA__
11._GU_133_/C___
____AACCGG__CCGG__AT____AA__
12._GU_133_/C___
____AACCGG__CCGG__AT____AA__
13._GU_133_/C___
____AACCGG__CCGG__AT____AA__
14._GU_133_/C___
AAGGAACC__GGCCGGAAATGGGGAA__
15._GU_133_/C___
AAGGAACCGGGGCCGGAAATGGGGAATT
16._GU_133_/C___
AAGGAACCGGGGCCGGAAATGGGGAATT
17._GU_133_/C___
AAGGAACCGGGGCCGGAAATGGGGAATT
18._GU_133_/C___
AAGGAACCGGGGCCGGAAATGGGGAATT
19._GU_133_/C___
AAGGAACCGGGGCCGGAAATGGGGAATT
20._GU_133_/C___
AAGGAACCGGGGCCGGAAATGGGGAATT
21._GU_133_/C___
AAGGAACCGGGGCCGGAAATGGGGAATT
22._GU_133_/C___
AAGGAACCGGGGCCGGAAATGGGGAATT
23._GU_133_/C___
____AACC____CCGG__AT____AA__
24._GU_133_/C___
______CCGG__CCGG__AT____AA__
25._GU_133_/C___
AAGGAACC__GGCCGGAAATGGGGAATT
26._GU_133_/C___
AAGG__CCGGGGCCGGAAATGGGGAATT
27._GU_133_/C___
__GGAACCGG__CC______GGGGAA__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGGGGGTTGGAACCAAGGCCGGCCACGG
1._GU_133_/C___
GGGGGGTTGGAACCAAGGCCGGCCACGG
2._GU_133_/C___
______________AA______CCAC__
3._GU_133_/C___
________CC____________CCAC__
4._GU_133_/C___
____GG________AA__GG__CCAC__
5._GU_133_/C___
____GG________AA__GG__CCAC__
6._GU_133_/C___
____GG________AA__GG__CCAC__
7._GU_133_/C___
____GG________AA__GG__CCAC__
8._GU_133_/C___
____GG________AA__GG__CCAC__
9._GU_133_/C___
____GG________AA__GG__CCAC__
10._GU_133_/C___
____GG________AA__GG__CCAC__
11._GU_133_/C___
____GG________AA__GG__CCAC__
12._GU_133_/C___
____GG________AA__GG__CCAC__
13._GU_133_/C___
____GG________AA__GG__CCAC__
14._GU_133_/C___
GGGGGGTTCC__CCAAGGGGGGCCACCC
15._GU_133_/C___
GGGGGGTTCC__CCAAGGGGGGCCACCC
16._GU_133_/C___
GGGGGGTTCC__CCAAGGGGGGCCACCC
17._GU_133_/C___
GGGGGGTTCC__CCAAGGGGGGCCACCC
18._GU_133_/C___
GGGGGGTTCC__CCAAGGGGGGCCACCC
19._GU_133_/C___
GGGGGGTTCC__CCAAGGGGGGCCACCC
20._GU_133_/C___
GGGGGGTTCC__CCAAGGGGGGCCACCC
21._GU_133_/C___
GGGGGGTTCC__CCAAGGGGGGCCACCC
22._GU_133_/C___
GGGGGGTTCC__CCAAGGGGGGCCACCC
23._GU_133_/C___
____GG________AA__GG__CCAC__
24._GU_133_/C___
____GG________AA__GG__CCAC__
25._GU_133_/C___
GGGGGGTTCC__CCAAGGGGGGCCACCC
26._GU_133_/C___
GGGGGGTTCC__CCAAGGGGGGCCACCC
27._GU_133_/C___
________CC____AA__GG__CCAC__
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGGGAACCAAAACCAAAAAACCGGCC
1._GU_133_/C___
GGGGGGAACCAAAACCAAAAAACCGGCC
2._GU_133_/C___
CC______GGAA________AACC__GG
3._GU_133_/C___
CC____________GG________GGCC
4._GU_133_/C___
__CC____GG________________GG
5._GU_133_/C___
__CC____GG________________GG
6._GU_133_/C___
__CC____GG________________GG
7._GU_133_/C___
__CC____GG________________GG
8._GU_133_/C___
__CC____GG________________GG
9._GU_133_/C___
__CC____GG________________GG
10._GU_133_/C___
__CC____GG________________GG
11._GU_133_/C___
__CC____GG________________GG
12._GU_133_/C___
__CC____GG________________GG
13._GU_133_/C___
__CC____GG________________GG
14._GU_133_/C___
CCCCAAAAGGAATT__TTTTAAGGAAGG
15._GU_133_/C___
CCCCAAAAGGAATTGGTTTTAAGG__GG
16._GU_133_/C___
CCCCAAAAGGAATTGGTTTTAAGG__GG
17._GU_133_/C___
CCCCAAAAGGAATTGGTTTTAAGG__GG
18._GU_133_/C___
CCCCAAAAGGAATTGGTTTTAAGG__GG
19._GU_133_/C___
CCCCAAAAGGAATTGGTTTTAAGG__GG
20._GU_133_/C___
CCCCAAAAGGAATTGGTTTTAAGG__GG
21._GU_133_/C___
CCCCAAAAGGAATTGGTTTTAAGG__GG
22._GU_133_/C___
CCCCAAAAGGAATTGGTTTTAAGG__GG
23._GU_133_/C___
__CC____GG________________GG
24._GU_133_/C___
__CC____GG________________GG
25._GU_133_/C___
CCCCAAAAGGAATTGGTTTTAAGG__GG
26._GU_133_/C___
CCCCAAAAGGAATTGGTTTTAAGG__GG
27._GU_133_/C___
CCCC____GGAATT____TTAA____GG
 71 72 73 74 75 76 77 78 79 80     
_Input profile
GGGGGGCCGGGGGGAAGGGGX_XX_XX_XX_X
1._GU_133_/C___
GGGGGGCCGGGGGGAAGGGGX_XX_XX_XX_X
2._GU_133_/C___
____GG____________GGX_XX_XX_XX_X
3._GU_133_/C___
CC______________CC__X_XX_XX_XX_X
4._GU_133_/C___
________CCGG__AACCGGX_XX_XX_XX_X
5._GU_133_/C___
CC______CCGG__AACCGGX_XX_XX_XX_X
6._GU_133_/C___
CC______CCGG__AACCGGX_XX_XX_XX_X
7._GU_133_/C___
CC______CCGG__AACCGGX_XX_XX_XX_X
8._GU_133_/C___
CC______CCGG__AACCGGX_XX_XX_XX_X
9._GU_133_/C___
CC______CCGG__AACCGGX_XX_XX_XX_X
10._GU_133_/C___
CC______CCGG__AACCGGX_XX_XX_XX_X
11._GU_133_/C___
CC______CCGG__AACCGGX_XX_XX_XX_X
12._GU_133_/C___
CC______CCGG__AACCGGX_XX_XX_XX_X
13._GU_133_/C___
CC______CCGG__AACCGGX_XX_XX_XX_X
14._GU_133_/C___
__CCGGCCCCGGCCAACCGGX_XX_XX_XX_X
15._GU_133_/C___
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
16._GU_133_/C___
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
17._GU_133_/C___
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
18._GU_133_/C___
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
19._GU_133_/C___
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
20._GU_133_/C___
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
21._GU_133_/C___
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
22._GU_133_/C___
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
23._GU_133_/C___
CC______CCGG__AACCGGX_XX_XX_XX_X
24._GU_133_/C___
CC______CCGG__AACCGGX_XX_XX_XX_X
25._GU_133_/C___
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
26._GU_133_/C___
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
27._GU_133_/C___
CC____CC__________GGX_XX_XX_XX_X

Input profile: GU_133_/C GC-01-116-6-13

 
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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_133_/C MITC-000670

identical
80 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

2._GU_133_/C RUQ_190

76.5 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
GU
0.998

3._GU_133_/C RUQ_190

59.1 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

4._GU_133_/C

53.3 %
30 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

5._GU_133_/C

51.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

6._GU_133_/C

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

7._GU_133_/C

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016

8._GU_133_/C

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

9._GU_133_/C

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

10._GU_133_/C

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

11._GU_133_/C

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

12._GU_133_/C

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

13._GU_133_/C RUQ_190

50 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._GU_133_/C GC-01-116-6-13

50 %
72 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

15._GU_133_/C GC-08-164-4-07

49.4 %
77 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

16._GU_133_/C GC-08-164-4-07

48.7 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

17._GU_133_/C GC-01-116-6-13

48.7 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

18._GU_133_/C GC-01-116-6-13

48.7 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

19._GU_133_/C GC-01-116-6-13

48.7 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

20._GU_133_/C GC-08-164-4-07

48.7 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

21._GU_133_/C GC-08-164-4-07

48.7 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

22._GU_133_/C GC-08-164-4-07

48.7 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

23._GU_133_/C

48.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

24._GU_133_/C

48.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

25._GU_133_/C GC-01-116-6-13

48.1 %
77 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

26._GU_133_/C GC-08-164-4-07

48.1 %
77 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

27._GU_133_/C RUQ_190

47.2 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP316 38TcSNP32 39TcSNP329 40TcSNP364
41TcSNP372 42TcSNP413 43TcSNP418 44TcSNP42 45TcSNP429
46TcSNP430 47TcSNP448 48TcSNP497 49TcSNP521 50TcSNP529
51TcSNP547 52TcSNP560 53TcSNP561 54TcSNP577 55TcSNP591
56TcSNP60 57TcSNP602 58TcSNP619 59TcSNP653 60TcSNP689
61TcSNP723 62TcSNP731 63TcSNP75 64TcSNP751 65TcSNP776
66TcSNP799 67TcSNP823 68TcSNP836 69TcSNP860 70TcSNP872
71TcSNP891 72TcSNP894 73TcSNP899 74TcSNP90 75TcSNP917
76TcSNP929 77TcSNP944 78TcSNP953 79TcSNP994 80TcSNP998