SNP Profiles of POUND 18   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACACAGACAAGGGGCCAAGGGGAAGGCC
1._IMC_2___
ACACAGACTTCCGGGGAACCGGTTCCGG
2._IMC_2___
ACACAGACTTCCGGGGAACCGGTTCCGG
3._IMC_2___
ACACAGACTTCC__GGAACCGGTTCCGG
4._IMC_2___
ACACAGACTTCCGGGGAACCGGTTCCGG
5._IMC_2___
__________CCGG__AA__________
6._IMC_2___
__________CCGG__AA__________
7._IMC_2___
__________CCGG__AA__________
8._IMC_2___
__________CCGG__AA__________
9._IMC_2___
__________CC____AA__________
10._IMC_2___
__________CC__GG____GG______
11._IMC_2___
__________CCGG__AA__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAGCCGGAGGGCCAACCAGAAAG
1._IMC_2___
TTTTTTTTCCGGCTCCCCTTGGAGTTCT
2._IMC_2___
TTTTTTTTCCGGCTCCCCTTGGAGTTCT
3._IMC_2___
TTTTTTTTCCGGCTCCCCTTGGAGTTCT
4._IMC_2___
TTTTTTTTCCGGCTCCCCTTGGAGTTCT
5._IMC_2___
__TTTT__CC__CT__CCTTGGAGTTCT
6._IMC_2___
__TTTT__CC__CT__CCTTGGAGTTCT
7._IMC_2___
__TTTT__CC__CT__CCTTGGAGTTCT
8._IMC_2___
__TTTT__CC__CT__CCTTGGAGTTCT
9._IMC_2___
__TTTT__CC__CT__CCTTGGAGTTCT
10._IMC_2___
__TT__CT______CCCCTTGGAGTTCT
11._IMC_2___
__GGTT__CC______ACTTCGAGGTCT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGAAGGACGGAGGGAGCGCCTTTTAGGG
1._IMC_2___
CCTTGGACCCAGGGCTCGGGAATTAGGG
2._IMC_2___
CCTTGGACCCAGGGCTCGGGAATTAGGG
3._IMC_2___
CCTTGGACCCAGGGCTCGGGAATTAGGG
4._IMC_2___
CCTTGGACCCAG__CTCGGGAATTAGGG
5._IMC_2___
CC____ACCCAG__CTCG____TT____
6._IMC_2___
CC____ACCCAG__CTCG____TT____
7._IMC_2___
CC____ACCCAG__CTCG____TT____
8._IMC_2___
CC____ACCCAG__CTCG____TT____
9._IMC_2___
CC____ACCCAG__CTCG____TT____
10._IMC_2___
____GGACCCAG__CT________AGGG
11._IMC_2___
______AC______CTGG____TT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
ATGGGGGGGGATGGGGAAACAGACGGCG
1._IMC_2___
ATCCGGGGGGATCC__AAACAGGTGGGG
2._IMC_2___
ATCCGGGGGGATCC__AAACAGGTGGGG
3._IMC_2___
ATCCGGGGGGATCC__AAACAGGTGGGG
4._IMC_2___
ATCCGGGGGGATCC__AAACAGGTGGGG
5._IMC_2___
AT______GG________AC__GT__GG
6._IMC_2___
AT______GG________AC__GT__GG
7._IMC_2___
AT______GG________AC__GT__GG
8._IMC_2___
AT______AG________AC__GT__GG
9._IMC_2___
AT______GG________AC__GT__GG
10._IMC_2___
AT__________CC____AC__GT__CG
11._IMC_2___
AA______GG________CC__GG__GG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
ACGGAGGGAAAAACGGAAAAACAAACCG
1._IMC_2___
ACCCCTCCAAAAGTGGTTTTGTTTACCG
2._IMC_2___
ACCCCTCCAAAAGTGGTTTTGTTTACCG
3._IMC_2___
ACCCCTCCAAAAGTGGTTTTGTTTACCG
4._IMC_2___
ACCCCTCCAAAAGTGGTTTTGTTTACCG
5._IMC_2___
AC____CC____GT______________
6._IMC_2___
AC____CC____GT______________
7._IMC_2___
AC____CC____GT______________
8._IMC_2___
AC____CC____GT______________
9._IMC_2___
AC____CC____GT______________
10._IMC_2___
AC__CTCC____GTGGTT____TTAC__
11._IMC_2___
AA____CC____GG______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
AGGGAAGGGGCCGGGGGGATAAAAX_XX_X
1._IMC_2___
AACCTTCCGGCCCCGGCCATTTAAX_XX_X
2._IMC_2___
AACCTTCCGGCCCCGGCCATTTAAX_XX_X
3._IMC_2___
AACCTTCCGGCCCCGGCCATTTAAX_XX_X
4._IMC_2___
AACCTTCCGGCCCCGGCCATTTAAX_XX_X
5._IMC_2___
__CCTT______CCGG__ATTTAAX_XX_X
6._IMC_2___
__CCTT______CCGG__ATTTAAX_XX_X
7._IMC_2___
__CCTT______CCGG__ATTTAAX_XX_X
8._IMC_2___
__CCCT______CCGG__ATTTAAX_XX_X
9._IMC_2___
__CCTT______CCGG__ATTTAAX_XX_X
10._IMC_2___
__CCTT____CC__________AAX_XX_X
11._IMC_2___
__CCTT______CC____AATTAAX_XX_X

Input profile: IMC_2 GC-04-42-3-6

 
Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 3, Rep: 6, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._IMC_2 GC-04-042-3-06

49.4 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

2._IMC_2 GC-04-042-3-06

49.4 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

3._IMC_2 GC-04-042-3-06

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

4._IMC_2 GC-04-042-3-06

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

5._IMC_2

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 5 > FP
 Dapeng Zhang, 2016

6._IMC_2

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 4 > FP
 Dapeng Zhang, 2016

7._IMC_2

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 8
 Dapeng Zhang, 2016

8._IMC_2 RUQ_828

45.7 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._IMC_2

45.6 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 1
 Dapeng Zhang, 2016

10._IMC_2 RUQ_828

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._IMC_2

40 %
30 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A41 T8
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998