SNP Profiles of POUND 18 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AC	AA	AA	AC	AA	AG	GG	CC	AA	GG	GG	AA	AG	CC
1._IMC_54___	__	__	__	__	__	__	GG	__	__	__	__	__	__	__
2._IMC_54___	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__
3._IMC_54___	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__
4._IMC_54___	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__
5._IMC_54___	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__
6._IMC_54___	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__
7._IMC_54___	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__
8._IMC_54___	AC	AA	AA	AC	TT	CT	GG	GG	AA	CC	GG	TT	CT	GG
9._IMC_54___	AC	AA	AA	AC	TT	CT	GG	GG	AA	CC	GG	TT	CT	GG
10._IMC_54___	AC	AA	AA	AC	TT	CT	GG	GG	AA	CC	GG	TT	CT	GG
11._IMC_54___	AC	AA	AA	AC	TT	CT	GG	GG	AA	CC	GG	TT	CT	GG
12._IMC_54___	AC	AA	AA	AC	TT	CT	GG	GG	AA	CC	GG	TT	CT	GG
13._IMC_54___	__	__	__	__	__	CT	__	GG	__	__	GG	__	__	__
14._IMC_54___	__	__	__	__	__	CT	GG	__	AT	__	__	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AA	AG	CC	GG	AA	GG	CC	AA	CG	AG	AC	AG
1._IMC_54___	__	TT	__	__	__	__	__	__	CC	__	CG	__	__	__
2._IMC_54___	__	TT	TT	__	CC	__	TT	__	__	__	CG	AG	GT	CT
3._IMC_54___	__	TT	TT	__	CC	__	TT	__	CC	TT	CG	AG	GT	CT
4._IMC_54___	__	TT	TT	__	CC	__	TT	__	CC	TT	CG	AG	GT	CT
5._IMC_54___	__	TT	TT	__	CC	__	TT	__	CC	TT	CG	AG	GT	CT
6._IMC_54___	__	TT	TT	__	CC	__	TT	__	CC	TT	CG	AG	GT	CT
7._IMC_54___	__	TT	TT	__	CC	__	TT	__	CC	TT	CG	AG	GT	CT
8._IMC_54___	TT	TT	TT	TT	CC	GG	TT	CC	CC	TT	CG	AG	GT	CT
9._IMC_54___	TT	TT	TT	TT	CC	GG	TT	CC	CC	TT	CG	AG	GT	CT
10._IMC_54___	TT	TT	TT	TT	CC	GG	TT	CC	CC	TT	CG	AG	GT	CT
11._IMC_54___	TT	TT	TT	TT	CC	GG	TT	CC	CC	TT	CG	AG	GT	CT
12._IMC_54___	TT	TT	TT	TT	CC	GG	TT	CC	CC	TT	CG	AG	GT	CT
13._IMC_54___	__	TT	__	CT	__	__	__	CC	CC	TT	CG	AG	GT	CT
14._IMC_54___	__	GT	TT	__	CC	__	__	__	CC	TT	CG	GG	GT	__

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	AA	GG	AC	GG	AG	GG	AA	GG	CC	TT	TT	AG	GG
1._IMC_54___	__	__	__	__	__	AG	__	__	__	__	__	__	AG	__
2._IMC_54___	CC	__	__	AC	CC	AG	__	CT	GG	__	__	TT	__	__
3._IMC_54___	CC	__	__	AA	CC	AG	__	TT	GG	__	__	TT	__	__
4._IMC_54___	CC	__	__	AA	CC	AG	__	TT	GG	__	__	TT	__	__
5._IMC_54___	CC	__	__	AA	CC	AG	__	TT	GG	__	__	TT	__	__
6._IMC_54___	CC	__	__	AA	CC	AG	__	TT	GG	__	__	TT	__	__
7._IMC_54___	CC	__	__	AA	CC	AG	__	TT	GG	__	__	TT	__	__
8._IMC_54___	CC	TT	GG	AA	CC	AG	GG	TT	GG	GG	AA	TT	AG	GG
9._IMC_54___	CC	TT	GG	AA	CC	AG	GG	TT	GG	GG	AA	TT	AG	GG
10._IMC_54___	CC	TT	GG	AA	CC	AG	GG	TT	GG	GG	AA	TT	AG	GG
11._IMC_54___	CC	TT	GG	AA	CC	AG	GG	TT	GG	GG	AA	TT	AG	GG
12._IMC_54___	CC	TT	GG	AA	CC	AG	GG	TT	GG	GG	AA	TT	AG	GG
13._IMC_54___	__	__	GG	AC	CC	AG	__	TT	__	__	__	__	AG	GG
14._IMC_54___	__	__	__	AC	__	GG	__	CT	CG	__	__	AT	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	GG	GG	GG	GG	AT	GG	AG	AA	CC	AG	AC	GG	GG
1._IMC_54___	__	__	__	__	__	__	__	__	__	CC	__	__	__	GG
2._IMC_54___	AA	__	__	__	AG	__	__	__	__	CC	__	GT	__	GG
3._IMC_54___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG
4._IMC_54___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG
5._IMC_54___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG
6._IMC_54___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG
7._IMC_54___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG
8._IMC_54___	AA	CC	GG	GG	GG	AT	__	__	AA	CC	AG	GT	GG	GG
9._IMC_54___	AA	CC	GG	GG	GG	AT	CC	__	AA	CC	AG	GT	GG	GG
10._IMC_54___	AA	CC	GG	GG	GG	AT	CC	__	AA	CC	AG	GT	GG	GG
11._IMC_54___	AA	CC	GG	GG	GG	AT	CC	__	AA	CC	AG	GT	GG	GG
12._IMC_54___	AA	CC	GG	GG	GG	AT	CC	__	AA	CC	AG	GT	GG	GG
13._IMC_54___	AA	__	__	__	__	__	CC	__	__	CC	__	GT	__	GG
14._IMC_54___	AT	__	__	__	AG	__	__	__	__	CC	__	GG	__	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AA	GG	GG	GG	AA	AA	CC	GG	AA	AA	AA	AA	AC	CC
1._IMC_54___	AA	__	CC	__	__	__	GG	GG	__	__	__	__	AC	TT
2._IMC_54___	AA	__	__	CC	__	__	GG	__	__	__	__	__	__	__
3._IMC_54___	AA	__	__	CC	__	__	GG	__	__	__	__	__	__	__
4._IMC_54___	AA	__	__	CC	__	__	GG	__	__	__	__	__	__	__
5._IMC_54___	AA	__	__	CC	__	__	GG	__	__	__	__	__	__	__
6._IMC_54___	AA	__	__	CC	__	__	GG	__	__	__	__	__	__	__
7._IMC_54___	AA	__	__	CC	__	__	GG	__	__	__	__	__	__	__
8._IMC_54___	AA	CC	CC	CC	AA	AA	GG	GG	TT	TT	TT	TT	AC	GG
9._IMC_54___	AA	CC	CC	CC	AA	AA	GG	GG	TT	TT	TT	TT	AC	GG
10._IMC_54___	AA	CC	CC	CC	AA	AA	GG	GG	TT	TT	TT	TT	AC	GG
11._IMC_54___	AA	CC	CC	CC	AA	AA	GG	GG	TT	TT	TT	TT	AC	GG
12._IMC_54___	AA	CC	CC	CC	AA	AA	GG	GG	TT	TT	TT	TT	AC	GG
13._IMC_54___	AA	__	CC	CC	__	__	GG	GG	TT	__	__	TT	AC	__
14._IMC_54___	AC	__	__	CC	__	__	GT	__	__	__	__	__	__	__

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	GG	GG	AG	GG	GG	CC	GG	GG	GG	AT	AA	AA	X_X	X_X
1._IMC_54___	__	CC	__	__	GG	__	__	__	__	__	__	AA	X_X	X_X
2._IMC_54___	__	CC	CT	__	__	__	CC	GG	__	AT	TT	AA	X_X	X_X
3._IMC_54___	__	CC	CT	__	__	__	CC	GG	__	AT	TT	AA	X_X	X_X
4._IMC_54___	__	CC	CT	__	__	__	CC	GG	__	AT	TT	AA	X_X	X_X
5._IMC_54___	__	CC	CT	__	__	__	CC	GG	__	AT	TT	AA	X_X	X_X
6._IMC_54___	__	CC	CT	__	__	__	CC	GG	__	AT	TT	AA	X_X	X_X
7._IMC_54___	__	CC	CT	__	__	__	CC	GG	__	AT	TT	AA	X_X	X_X
8._IMC_54___	__	CC	CT	CC	GG	CC	CC	GG	CC	AT	TT	AA	X_X	X_X
9._IMC_54___	__	CC	CT	CC	GG	CC	CC	GG	CC	AT	TT	AA	X_X	X_X
10._IMC_54___	__	CC	CT	CC	GG	CC	CC	GG	CC	AT	TT	AA	X_X	X_X
11._IMC_54___	__	CC	CT	CC	GG	CC	CC	GG	CC	AT	TT	AA	X_X	X_X
12._IMC_54___	__	CC	CT	CC	GG	CC	CC	GG	CC	AT	TT	AA	X_X	X_X
13._IMC_54___	__	CC	TT	__	__	CC	__	__	__	__	__	AA	X_X	X_X
14._IMC_54___	__	CC	CT	__	__	__	CT	GG	__	TT	TT	AA	X_X	X_X

Input profile: IMC_54 GC-04-18-1-18

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Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 1, Rep: 18, Tree: 7

Notes: MCCS_Structure_refs_above_0.9membership

1._IMC_54 RUQ_11

70.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

2._IMC_54 RUQ_11

50 %
33 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._IMC_54

50 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 6 > FP

Dapeng Zhang, 2016

4._IMC_54

50 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 5 > FP

Dapeng Zhang, 2016

5._IMC_54

50 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 4 > FP

Dapeng Zhang, 2016

6._IMC_54

50 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 3 > FP

Dapeng Zhang, 2016

7._IMC_54

50 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 7

Dapeng Zhang, 2016

8._IMC_54 GC-04-018-1-18

50 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

9._IMC_54 GC-04-018-1-18

49.4 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

10._IMC_54 GC-04-018-1-18

49.4 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

11._IMC_54 GC-04-018-1-18

49.4 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP1

12._IMC_54 GC-04-018-1-18

49.4 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

13._IMC_54 RUQ_11

47.2 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

14._IMC_54

43.5 %
31 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D311

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998