SNP Profiles of POUND 18   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAAAACCAAGGGGCCAAGGGGAAAGCC
1._POUND_18___
CCAAAACCAAGGGGCCAAGGGGAAAGCC
2._POUND_18___
____________GG______________
3._POUND_18___
____________GG______________
4._POUND_18___
__________CCGG__AA__________
5._POUND_18___
__________CCGG__AA__________
6._POUND_18___
__________CCGG__AA__________
7._POUND_18___
__________CCGG__AA__________
8._POUND_18___
__________CCGG__AA__________
9._POUND_18___
__________CCGG__AA__________
10._POUND_18___
__________CCGG__AA__________
11._POUND_18___
__________CCGG__AA__________
12._POUND_18___
__________CCGG__AA__________
13._POUND_18___
CCAAAACCTTCCGGGGAACCGGTTCTGG
14._POUND_18___
__________CCGG__AA__________
15._POUND_18___
CCAAAACCTTCCGGGGAACCGGTTCTGG
16._POUND_18___
CCAAAACCTTCCGGGGAACCGGTTCTGG
17._POUND_18___
CCAAAACCTTCCGGGGAACCGGTTCTGG
18._POUND_18___
CCAAAACCTTCCGGGGAACCGGTTCTGG
19._POUND_18___
CCAAAACCTTCCGGGGAACCGGTTCTGG
20._POUND_18___
CCAAAACCTTCCGGGGAACCGGTTCTGG
21._POUND_18___
CCAAAACCTTCCGGGGAACCGGTTCTGG
22._POUND_18___
CCAAAACCTTCCGGGGAACCGGTTCTGG
23._POUND_18___
__________CCGG__AA__________
24._POUND_18___
__________CC__GG____GG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAACAAAACCGGAGGGACAACGAAACAG
1._POUND_18___
AAACAAAACCGGAGGGACAACGAAACAG
2._POUND_18___
__GT____________AC__CG______
3._POUND_18___
__GT____________AC__CG______
4._POUND_18___
__GTTT__CC__CT__ACTTCGAAGTCT
5._POUND_18___
__GTTT__CC__CT__ACTTCGAAGTCT
6._POUND_18___
__GTTT__CC__CT__ACTTCGAAGTCT
7._POUND_18___
__GTTT__CC__CT__ACTTCGAAGTCT
8._POUND_18___
__GTTT__CC__CT__ACTTCGAAGTCT
9._POUND_18___
__GTTT__CC__CT__ACTTCGAAGTCT
10._POUND_18___
__GTTT__CC__CT__ACTTCGAAGTCT
11._POUND_18___
__GTTT__CC__CT__ACTTCGAAGTCT
12._POUND_18___
__GTTT__CC__CT__ACTTCGAAGTCT
13._POUND_18___
TTGTTTTTCCGGCTCCACTTCGAAGTCT
14._POUND_18___
__GTTT__CC__CT__ACTTCGAAGTCT
15._POUND_18___
TTGTTTTTCCGGCTCCACTTCGAAGTCT
16._POUND_18___
TTGTTTTTCCGGCTCCACTTCGAAGTCT
17._POUND_18___
TTGTTTTTCCGGCTCCACTTCGAAGTCT
18._POUND_18___
TTGTTTTTCCGGCTCCACTTCGAAGTCT
19._POUND_18___
TTGTTTTTCCGGCTCCACTTCGAAGTCT
20._POUND_18___
TTGTTTTTCCGGCTCCACTTCGAAGTCT
21._POUND_18___
TTGTTTTTCCGGCTCCACTTCGAAGTCT
22._POUND_18___
TTGTTTTTCCGGCTCCACTTCGAAGTCT
23._POUND_18___
__GTTT__CC__CT__ACTTCGAGGTCT
24._POUND_18___
__GT__TT______CCACTTCGAAGTCT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGAAGGCCCGAAGGAGGGCCTTTTAGGG
1._POUND_18___
GGAAGGCCCGAAGGAGGGCCTTTTAGGG
2._POUND_18___
__________AA____________AG__
3._POUND_18___
__________AA____________AG__
4._POUND_18___
CC____CCCGAA__CTGG____TT____
5._POUND_18___
CC____CCCGAA__CTGG____TT____
6._POUND_18___
CC____CCCGAA__CTGG____TT____
7._POUND_18___
CC____CCCGAA__CTGG____TT____
8._POUND_18___
CC____CCCGAA__CTGG____TT____
9._POUND_18___
CC____CCCGAA__CTGG____TT____
10._POUND_18___
CC____CCCGAA__CTGG____TT____
11._POUND_18___
CC____CCCGAA__CTGG____TT____
12._POUND_18___
CC____CCCGAA__CTGG____TT____
13._POUND_18___
CCTTGGCCCGAAGGCTGGGGAATTAGGG
14._POUND_18___
CC____CC__AA__CTGG____TT____
15._POUND_18___
CCTTGGCCCGAAGGCTGGGGAATTAGGG
16._POUND_18___
CCTTGGCCCGAAGGCTGGGGAATTAGGG
17._POUND_18___
CCTTGGCCCGAAGGCTGGGGAATTAGGG
18._POUND_18___
CCTTGGCCCGAAGGCTGGGGAATTAGGG
19._POUND_18___
CCTTGGCCCGAAGGCTGGGGAATTAGGG
20._POUND_18___
CCTTGGCCCGAAGGCTGGGGAATTAGGG
21._POUND_18___
CCTTGGCCCGAAGGCTGGGGAATTAGGG
22._POUND_18___
CCTTGGCCCGAAGGCTGGGGAATTAGGG
23._POUND_18___
CC____CCCGAA__CTGG____TT____
24._POUND_18___
____GGCCCGAA__CT________AGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGAGGGGGAAGGAGAAACGGACGGGG
1._POUND_18___
AAGGAGGGGGAAGGAGAAACGGACGGGG
2._POUND_18___
__________________AC______GG
3._POUND_18___
__________________AC______GG
4._POUND_18___
AA______GG________AC__GT__GG
5._POUND_18___
AA______GG________AC__GT__GG
6._POUND_18___
AA______GG________AC__GT__GG
7._POUND_18___
AA______GG________AC__GT__GG
8._POUND_18___
AA______GG________AC__GT__GG
9._POUND_18___
AA______GG________AC__GT__GG
10._POUND_18___
AA______GG________AC__GT__GG
11._POUND_18___
AA______GG________AC__GT__GG
12._POUND_18___
AA______GG________AC__GT__GG
13._POUND_18___
AACCAGGGGGAACC__AAACGGGTGGGG
14._POUND_18___
AA______GG________AC__GT__GG
15._POUND_18___
AACCAGGGGGAACC__AAACGGGTGGGG
16._POUND_18___
AACCAGGGGGAACC__AAACGGGTGGGG
17._POUND_18___
AACCAGGGGGAACC__AAACGGGTGGGG
18._POUND_18___
AACCAGGGGGAACC__AAACGGGTGGGG
19._POUND_18___
AACCAGGGGGAACC__AAACGGGTGGGG
20._POUND_18___
AACCAGGGGGAACC__AAACGGGTGGGG
21._POUND_18___
AACCAGGGGGAACC__AAACGGGTGGGG
22._POUND_18___
AACCAGGGGGAACC____ACGGGTGGGG
23._POUND_18___
AA______AG________AC__GT__GG
24._POUND_18___
AA__________CC____AC__GT__GG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
ACGGGGGGAAAACCGGAAAAACAAACCG
1._POUND_18___
ACGGGGGGAAAACCGGAAAAACAAACCG
2._POUND_18___
AC__CC______GGGG________ACCT
3._POUND_18___
AC__CC______GGGG________ACCT
4._POUND_18___
AC____CC____GG______________
5._POUND_18___
AC____CC____GG______________
6._POUND_18___
AC____CC____GG______________
7._POUND_18___
AC____CC____GG______________
8._POUND_18___
AC____CC____GG______________
9._POUND_18___
AC____CC____GG______________
10._POUND_18___
AC____CC____GG______________
11._POUND_18___
AC____CC____GG______________
12._POUND_18___
AC____CC____GG______________
13._POUND_18___
ACCCCCCCAAAAGGGG__TTGTTTACCG
14._POUND_18___
AC____CC____GG______________
15._POUND_18___
ACCCCCCCAAAAGGGGTTTTGTTTACCG
16._POUND_18___
ACCCCCCCAAAAGGGGTTTTGTTTACCG
17._POUND_18___
ACCCCCCCAAAAGGGGTTTTGTTTACCG
18._POUND_18___
ACCCCCCCAAAAGGGGTTTTGTTTACCG
19._POUND_18___
ACCCCCCCAAAAGGGGTTTTGTTTACCG
20._POUND_18___
ACCCCCCCAAAAGGGGTTTTGTTTACCG
21._POUND_18___
ACCCCCCCAAAAGGGGTTTTGTTTACCG
22._POUND_18___
ACCCCCCCAAAAGGGGTTTTGTTTACCG
23._POUND_18___
AC____CC____GG______________
24._POUND_18___
AC__CCCC____GGGGTT____TTAC__
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGGGAGGGGGCCGGGGGGAAAAAAX_XX_X
1._POUND_18___
GGGGAGGGGGCCGGGGGGAAAAAAX_XX_X
2._POUND_18___
__CC____GG____________AAX_XX_X
3._POUND_18___
__CC____GG____________AAX_XX_X
4._POUND_18___
__CCCT______CCGG__AATTAAX_XX_X
5._POUND_18___
__CCCT______CCGG__AATTAAX_XX_X
6._POUND_18___
__CCCT______CCGG__AATTAAX_XX_X
7._POUND_18___
__CCCT______CCGG__AATTAAX_XX_X
8._POUND_18___
__CCCT______CCGG__AATTAAX_XX_X
9._POUND_18___
__CCCT______CCGG__AATTAAX_XX_X
10._POUND_18___
__CCCT______CCGG__AATTAAX_XX_X
11._POUND_18___
__CCCT______CCGG__AATTAAX_XX_X
12._POUND_18___
__CCCT______CCGG__AATTAAX_XX_X
13._POUND_18___
__CCCTCCGGCCCCGGCCAATTAAX_XX_X
14._POUND_18___
__CCCT______CCGG__AATTAAX_XX_X
15._POUND_18___
__CCCTCCGGCCCCGGCCAATTAAX_XX_X
16._POUND_18___
__CCCTCCGGCCCCGGCCAATTAAX_XX_X
17._POUND_18___
__CCCTCCGGCCCCGGCCAATTAAX_XX_X
18._POUND_18___
__CCCTCCGGCCCCGGCCAATTAAX_XX_X
19._POUND_18___
__CCCTCCGGCCCCGGCCAATTAAX_XX_X
20._POUND_18___
__CCCTCCGGCCCCGGCCAATTAAX_XX_X
21._POUND_18___
__CCCTCCGGCCCCGGCCAATTAAX_XX_X
22._POUND_18___
__CCCTCCGGCCCCGGCCAATTAAX_XX_X
23._POUND_18___
__CCCT______CCGG__AATTAAX_XX_X
24._POUND_18___
__CCTT____CC__________AAX_XX_X

Input profile: POUND_18 GC-08-64-1-86

 
Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 86, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._POUND_18 RUQ_874

identical
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._POUND_18 RUQ_874B

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._POUND_18 RUQ_874

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

4._POUND_18

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 4
 Dapeng Zhang, 2016

5._POUND_18

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 2 > FP
 Dapeng Zhang, 2016

6._POUND_18

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 12
 Dapeng Zhang, 2016

7._POUND_18

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 11
 Dapeng Zhang, 2016

8._POUND_18

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 9
 Dapeng Zhang, 2016

9._POUND_18

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 7
 Dapeng Zhang, 2016

10._POUND_18

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 6
 Dapeng Zhang, 2016

11._POUND_18

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 3
 Dapeng Zhang, 2016

12._POUND_18

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 1
 Dapeng Zhang, 2016

13._POUND_18 GC-08-064-1-86

53.2 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._POUND_18

52.9 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F447 T2
 Dapeng Zhang, 2016

15._POUND_18 GC-08-064-1-86

52.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

16._POUND_18 GC-08-064-1-86

52.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

17._POUND_18 GC-08-064-1-86

52.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

18._POUND_18 GC-08-064-1-86

52.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

19._POUND_18 GC-08-064-1-86

52.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

20._POUND_18 GC-08-064-1-86

52.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

21._POUND_18 GC-08-064-1-86

52.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

22._POUND_18 GC-08-064-1-86

51.9 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

23._POUND_18 RUQ_874

51.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._POUND_18 RUQ_874

50 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998