SNP Profiles of NA 149   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAAAAACAAGGGGCCAAGGGGAAAACC
1._POUND_5_/C___
CCAAAAAAAAGGAACCAAGGAAAAGGCC
2._POUND_5_/C___
__________CCGG__AA__________
3._POUND_5_/C___
CCAAAAACTTCCGGGGAACCGGTTTTGG
4._POUND_5_/C___
CCAAAAACTTCCGGGGAACCGGTTTTGG
5._POUND_5_/C___
CCAAAAACTTCCGGGGAACCGGTTTTGG
6._POUND_5_/C___
CCAAAAACTTCCGGGGAACCGGTTTTGG
7._POUND_5_/C___
__________CCGG__AA__________
8._POUND_5_/C___
__________CCGG__AA__________
9._POUND_5_/C___
__________CCGG__AA__________
10._POUND_5_/C___
__________CCGG__AA__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAACCGGAAGGCCAACCAACCGG
1._POUND_5_/C___
GGAAGGAAAAGGAAAAAAGGCCGGAAGG
2._POUND_5_/C___
__TTTT__CC__TT__CCTTGGAAGGCC
3._POUND_5_/C___
TTTTTTTT__GGTTCCCCTTGGAAGGCC
4._POUND_5_/C___
TTTTTTTT__GGTTCCCCTTGGAAGGCC
5._POUND_5_/C___
TTTTTTTT__GGTTCCCCTTGGAAGGCC
6._POUND_5_/C___
TTTTTTTT__GGTTCCCCTTGGAAGGCC
7._POUND_5_/C___
__TTTT______TT__CCTTGGAAGGCC
8._POUND_5_/C___
__TTTT______TT__CCTTGGAAGGCC
9._POUND_5_/C___
__TTTT______TT__CCTTGGAAGGCC
10._POUND_5_/C___
__TTTT______TT__CCTTGGAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGAAGGAAGGAGGGGGGGCCTTTTGGGG
1._POUND_5_/C___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
2._POUND_5_/C___
CC____AA__AG__CCGG____TT____
3._POUND_5_/C___
CCTTGGAACCAGGGCCGGGGAATTGGGG
4._POUND_5_/C___
CCTTGGAACCAGGGCCGGGGAATTGGGG
5._POUND_5_/C___
CCTTGGAACCAGGGCCGGGGAATTGGGG
6._POUND_5_/C___
CCTTGGAACCAGGGCCGGGGAATTGGGG
7._POUND_5_/C___
CC____AACCAG__CCGG____TT____
8._POUND_5_/C___
CC____AACCAG__CCGG____TT____
9._POUND_5_/C___
CC____AACCAG__CCGG____TT____
10._POUND_5_/C___
CC____AACCAG__CCGG____TT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAGGGGGGGAAGGAAAACCAACCGGGG
1._POUND_5_/C___
AAAAGGGGGGTTGGAACCCCGGAAAACC
2._POUND_5_/C___
AA______GG________CC__GG__GG
3._POUND_5_/C___
AACTGGGGGGAACC__AACCAAGGGGGG
4._POUND_5_/C___
AACTGGGGGGAACC__AACCAAGGGGGG
5._POUND_5_/C___
AACTGGGGGG__CC__AACCAAGGGGGG
6._POUND_5_/C___
AACTGGGGGGAACC__AACCAAGGGGGG
7._POUND_5_/C___
AA______GG________CC__GG__GG
8._POUND_5_/C___
AA______GG________CC__GG__GG
9._POUND_5_/C___
AA______GG________CC__GG__GG
10._POUND_5_/C___
AA______GG________CC__GG__GG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AAGGGGGGAAAACCGGAAAACCAACCCC
1._POUND_5_/C___
AAGGAAAAGGAACCGGAAAAAAAAAACC
2._POUND_5_/C___
AA____CC____GG______________
3._POUND_5_/C___
AACCCCCCAAAAGGGGTTTTGGTTCCGG
4._POUND_5_/C___
AACCCCCCAAAAGGGGTTTTGGTTCCGG
5._POUND_5_/C___
AACCCCCCAAAAGGGGTTTTGGTTCCGG
6._POUND_5_/C___
AACCCCCCAAAAGGGGTTTTGGTTCCGG
7._POUND_5_/C___
AA____CC____GG______________
8._POUND_5_/C___
AA____CC____GG______________
9._POUND_5_/C___
AA____CC____GG______________
10._POUND_5_/C___
AA____CC____GG______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCCGGGGGGCCGGGGGGAAAAGGX_XX_X
1._POUND_5_/C___
GGCCGGGGAACCAACCGGAAAAGGX_XX_X
2._POUND_5_/C___
__GGCC______CCGG__AATTGGX_XX_X
3._POUND_5_/C___
__GGCCCCGGCCCCGGCCAATTGGX_XX_X
4._POUND_5_/C___
__GGCCCCGGCCCCGGCCAATTGGX_XX_X
5._POUND_5_/C___
__GGCCCCGGCCCCGGCCAATTGGX_XX_X
6._POUND_5_/C___
__GGCCCCGG__CCGGCCAATTGGX_XX_X
7._POUND_5_/C___
__GGCC______CCGG__AATTGGX_XX_X
8._POUND_5_/C___
__GGCC______CCGG__AATTGGX_XX_X
9._POUND_5_/C___
__GGCC______CCGG__AATTGGX_XX_X
10._POUND_5_/C___
__GGCC______CCGG__AATTGGX_XX_X

Input profile: POUND_5_/C GC-01-118-6-15

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 15, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._POUND_5_/C GC-01-118-6-15

65.2 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 15, Tree: 13
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._POUND_5_/C

50 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A77 T10
 Dapeng Zhang, 2016

3._POUND_5_/C GC-08-165-4-08

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

4._POUND_5_/C GC-08-165-4-08

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

5._POUND_5_/C GC-08-165-4-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._POUND_5_/C GC-08-165-4-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._POUND_5_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8408 4
 Dapeng Zhang, 2016

8._POUND_5_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8408 5
 Dapeng Zhang, 2016

9._POUND_5_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8408 6
 Dapeng Zhang, 2016

10._POUND_5_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8408 11
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998