SNP Profiles of RB 39 [BRA] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	CC	GG	CC	AA	AA	GG	CC	AA	GG	GG	AA	AA	AC
1._GC-01-042-2-19	CC	CC	GG	CC	TT	__	GG	GG	AA	CC	GG	__	TT	GT
2._GC-01-042-2-19	CC	CC	GG	CC	TT	TT	GG	GG	AA	CC	GG	TT	TT	GT
3._GC-01-042-2-19	CC	CC	GG	CC	TT	TT	GG	GG	AA	CC	GG	TT	TT	GT
4._GC-01-042-2-19	CC	CC	GG	CC	TT	TT	GG	GG	AA	CC	GG	TT	TT	GT
5._GC-01-042-2-19	CC	CC	GG	CC	TT	TT	GG	GG	AA	CC	GG	TT	TT	GT
6._GC-01-042-2-19	CC	CC	GG	CC	TT	TT	GG	GG	AA	CC	GG	TT	TT	GT
7._GC-01-042-2-19	CC	CC	GG	CC	TT	TT	GG	GG	AA	CC	GG	TT	TT	GT
8._GC-01-042-2-19	CC	CC	GG	CC	TT	TT	GG	GG	AA	CC	GG	TT	TT	GT
9._RB_39_[BRA]	__	__	__	__	__	TT	GG	__	AA	__	__	__	__	__
10._RB_39_[BRA]	__	__	__	__	__	TT	GG	__	AA	__	__	__	__	__
11._RB_39_[BRA]	__	__	__	__	__	TT	GG	__	AA	__	__	__	__	__
12._RB_39_[BRA]	__	__	__	__	__	TT	GG	__	AA	__	__	__	__	__
13._RB_39_[BRA]	__	__	__	__	__	TT	GG	__	AA	__	__	__	__	__
14._RB_39_[BRA]	__	__	__	__	__	TT	GG	__	AA	__	__	__	__	__
15._RB_39_[BRA]	__	__	__	__	__	TT	GG	__	AA	__	__	__	__	__
16._GC-01-042-2-19	CC	__	GG	CC	TT	CT	GG	__	__	CC	AG	TT	__	GT
17._RB_39_[BRA]	__	__	__	__	__	__	GG	__	AA	__	__	__	__	__
18._RB_39_[BRA]	__	__	__	__	__	CT	GG	__	__	__	__	__	__	__
19._RB_39_[BRA]	__	__	__	__	__	__	GG	__	AA	__	__	__	__	__
20._RB_39_[BRA]	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
21._GC-01-042-2-19	CC	AA	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
22._RB_39_[BRA]	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	AA	AG	AA	GG	GG	GG	GG	AA	CC	AG	GG	TT
1._GC-01-042-2-19	TT	GG	TT	TT	AA	GG	CC	CC	CC	AA	GG	CT	CC	AA
2._GC-01-042-2-19	TT	GG	TT	TT	AA	GG	CC	CC	CC	AA	GG	CT	CC	AA
3._GC-01-042-2-19	TT	GG	TT	TT	AA	GG	CC	CC	CC	AA	GG	CT	CC	AA
4._GC-01-042-2-19	TT	GG	TT	TT	AA	GG	CC	CC	CC	AA	GG	CT	CC	AA
5._GC-01-042-2-19	TT	GG	TT	TT	AA	GG	CC	CC	CC	AA	GG	CT	CC	AA
6._GC-01-042-2-19	TT	GG	TT	TT	AA	GG	CC	CC	CC	AA	GG	CT	CC	AA
7._GC-01-042-2-19	TT	GG	TT	TT	AA	GG	CC	CC	CC	AA	GG	CT	CC	AA
8._GC-01-042-2-19	TT	GG	TT	TT	AA	GG	CC	CC	CC	AA	GG	CT	CC	AA
9._RB_39_[BRA]	__	GG	TT	__	AA	__	CC	__	CC	AA	GG	CT	CC	__
10._RB_39_[BRA]	__	GG	TT	__	AA	__	CC	__	CC	AA	GG	CT	CC	__
11._RB_39_[BRA]	__	GG	TT	__	AA	__	CC	__	CC	AA	GG	CT	CC	__
12._RB_39_[BRA]	__	GG	TT	__	AA	__	CC	__	CC	AA	GG	CT	CC	__
13._RB_39_[BRA]	__	GG	TT	__	AA	__	CC	__	CC	AA	GG	CT	CC	__
14._RB_39_[BRA]	__	GG	TT	__	AA	__	CC	__	CC	AA	GG	CT	CC	__
15._RB_39_[BRA]	__	GG	TT	__	AA	__	CC	__	CC	AA	GG	CT	CC	__
16._GC-01-042-2-19	TT	GG	TT	TT	AA	GG	CC	CC	CC	__	GG	CT	CC	AA
17._RB_39_[BRA]	__	GG	TT	__	AA	__	CC	__	CC	AA	GG	CT	CC	__
18._RB_39_[BRA]	__	GG	TT	__	AA	__	CC	__	CC	__	GG	CT	CC	__
19._RB_39_[BRA]	__	GG	TT	__	AA	__	CT	__	CC	AA	GG	TT	__	__
20._RB_39_[BRA]	__	GG	TT	__	AA	__	CT	__	CC	AA	GG	__	CC	__
21._GC-01-042-2-19	TT	TT	TT	TT	__	GG	TT	CC	CC	GG	TT	TT	CC	AA
22._RB_39_[BRA]	__	TT	TT	__	__	__	TT	__	CC	GG	TT	TT	CC	__

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	CC	CC	AA	GG	AG	GG	CC	AT	AA	AA	GG	AA	GG
1._GC-01-042-2-19	GG	__	GG	AA	GG	CT	GG	GG	AT	AA	AA	GG	AA	CC
2._GC-01-042-2-19	GG	CC	GG	AA	GG	CT	GG	GG	AT	AA	AA	GG	AA	CC
3._GC-01-042-2-19	GG	CC	GG	AA	GG	CT	GG	GG	AT	AA	AA	GG	AA	CC
4._GC-01-042-2-19	GG	CC	GG	AA	GG	CT	GG	GG	AT	AA	AA	GG	AA	CC
5._GC-01-042-2-19	GG	CC	GG	AA	GG	CT	GG	GG	AT	AA	AA	GG	AA	CC
6._GC-01-042-2-19	GG	CC	GG	AA	GG	CT	GG	GG	AT	AA	AA	GG	AA	CC
7._GC-01-042-2-19	GG	CC	GG	AA	GG	CT	GG	GG	AT	AA	AA	GG	AA	CC
8._GC-01-042-2-19	GG	CC	GG	AA	GG	CT	GG	GG	AT	AA	AA	GG	AA	CC
9._RB_39_[BRA]	__	CC	GG	AA	__	CT	GG	__	__	AA	__	__	AA	__
10._RB_39_[BRA]	__	CC	GG	AA	__	CT	GG	__	__	AA	__	__	AA	__
11._RB_39_[BRA]	__	CC	GG	AA	__	CT	GG	__	__	AA	__	__	AA	__
12._RB_39_[BRA]	__	CC	GG	AA	__	CT	GG	__	__	AA	__	__	AA	__
13._RB_39_[BRA]	__	CC	GG	AA	__	CT	GG	__	__	AA	__	__	AA	__
14._RB_39_[BRA]	__	CC	GG	AA	__	CT	GG	__	__	AA	__	__	AA	__
15._RB_39_[BRA]	__	CC	GG	AA	__	CT	GG	__	__	AA	__	__	AA	__
16._GC-01-042-2-19	GG	CC	__	AA	__	__	GG	GG	AT	AA	__	GG	AT	CC
17._RB_39_[BRA]	__	__	GG	AA	__	CT	GG	__	__	AA	__	__	AA	__
18._RB_39_[BRA]	__	CC	__	AA	__	__	GG	__	__	AA	__	__	AT	__
19._RB_39_[BRA]	__	CC	__	AA	__	TT	GG	__	__	AA	__	__	AA	__
20._RB_39_[BRA]	__	CC	__	AA	__	TT	GG	__	__	AA	__	__	AA	__
21._GC-01-042-2-19	GG	AA	CC	GG	GG	CC	GG	GG	AA	AA	GG	GG	AA	TT
22._RB_39_[BRA]	__	AA	CC	GG	__	CC	GG	__	__	AA	__	__	AA	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	GG	GG	AA	CC	AA	AC	AC	AA	CC	GG	CG	AC	GG
1._GC-01-042-2-19	AA	GG	GG	AA	GG	__	AC	AC	AA	GG	GG	GG	AC	CC
2._GC-01-042-2-19	AA	GG	GG	AA	GG	__	AC	AC	AA	GG	GG	GG	AC	CC
3._GC-01-042-2-19	AA	GG	GG	AA	GG	__	AC	AC	AA	GG	GG	GG	AC	CC
4._GC-01-042-2-19	AA	GG	GG	AA	GG	__	AC	AC	AA	GG	GG	GG	AC	CC
5._GC-01-042-2-19	AA	GG	GG	AA	GG	__	AC	AC	AA	GG	GG	GG	AC	CC
6._GC-01-042-2-19	AA	GG	GG	AA	GG	__	AC	AC	AA	GG	GG	GG	AC	CC
7._GC-01-042-2-19	AA	GG	GG	AA	GG	__	AC	AC	AA	GG	GG	GG	AC	CC
8._GC-01-042-2-19	AA	GG	GG	AA	GG	__	AC	AC	AA	GG	GG	GG	AC	CC
9._RB_39_[BRA]	__	__	GG	__	__	__	__	AC	__	GG	__	GG	AC	__
10._RB_39_[BRA]	__	__	GG	__	__	__	__	AC	__	GG	__	GG	AC	__
11._RB_39_[BRA]	__	__	GG	__	__	__	__	AC	__	GG	__	GG	AC	__
12._RB_39_[BRA]	__	__	GG	__	__	__	__	AC	__	GG	__	GG	AC	__
13._RB_39_[BRA]	__	__	GG	__	__	__	__	AC	__	GG	__	GG	AC	__
14._RB_39_[BRA]	__	__	GG	__	__	__	__	AC	__	GG	__	GG	AC	__
15._RB_39_[BRA]	__	__	GG	__	__	__	__	AC	__	GG	__	GG	AC	__
16._GC-01-042-2-19	AA	__	GG	AA	GG	__	AC	AC	AA	GG	__	GG	AC	CC
17._RB_39_[BRA]	__	__	GG	__	__	__	__	AC	__	GG	__	GG	AC	__
18._RB_39_[BRA]	__	__	GG	__	__	__	__	AC	__	GG	__	GG	AC	__
19._RB_39_[BRA]	__	__	GG	__	__	__	__	CC	__	__	__	GG	AC	__
20._RB_39_[BRA]	__	__	__	__	__	__	__	CC	__	GG	__	GG	AC	__
21._GC-01-042-2-19	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AC	CC
22._RB_39_[BRA]	__	__	GG	__	__	__	__	AA	__	GG	__	CC	AC	__

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	GG	AA	AA	CC	AA	AA	CC	AC	AA	AC	CC	AA	CC
1._GC-01-042-2-19	CC	CC	AA	AG	GG	AA	TT	GG	GT	TT	AC	__	AA	GG
2._GC-01-042-2-19	CC	CC	AA	AG	GG	AA	TT	GG	GT	TT	AC	GG	AA	GG
3._GC-01-042-2-19	CC	CC	AA	AG	GG	AA	TT	GG	GT	TT	AC	GG	AA	GG
4._GC-01-042-2-19	CC	CC	AA	AG	GG	AA	TT	GG	GT	TT	AC	GG	AA	GG
5._GC-01-042-2-19	CC	CC	AA	AG	GG	AA	TT	GG	GT	TT	AC	GG	AA	GG
6._GC-01-042-2-19	CC	CC	AA	AG	GG	AA	TT	GG	GT	TT	AC	GG	AA	GG
7._GC-01-042-2-19	CC	CC	AA	AG	GG	AA	TT	GG	GT	TT	AC	GG	AA	GG
8._GC-01-042-2-19	CC	CC	AA	AG	GG	AA	TT	GG	GT	TT	AC	GG	AA	GG
9._RB_39_[BRA]	__	CC	__	__	GG	__	__	__	__	__	__	__	__	GG
10._RB_39_[BRA]	__	CC	__	__	GG	__	__	__	__	__	__	__	__	GG
11._RB_39_[BRA]	__	CC	__	__	GG	__	__	__	__	__	__	__	__	GG
12._RB_39_[BRA]	__	CC	__	__	GG	__	__	__	__	__	__	__	__	GG
13._RB_39_[BRA]	__	CC	__	__	GG	__	__	__	__	__	__	__	__	GG
14._RB_39_[BRA]	__	CC	__	__	GG	__	__	__	__	__	__	__	__	GG
15._RB_39_[BRA]	__	CC	__	__	GG	__	__	__	__	__	__	__	__	GG
16._GC-01-042-2-19	CC	CC	AA	__	GG	AA	__	GG	__	TT	AC	GG	AA	GG
17._RB_39_[BRA]	__	CC	__	__	GG	__	__	__	__	__	__	__	__	GG
18._RB_39_[BRA]	__	CC	__	__	GG	__	__	__	__	__	__	__	__	GG
19._RB_39_[BRA]	__	CC	__	__	GG	__	__	__	__	__	__	__	__	GG
20._RB_39_[BRA]	__	CC	__	__	GG	__	__	__	__	__	__	__	__	GG
21._GC-01-042-2-19	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__	GG
22._RB_39_[BRA]	__	CC	__	__	GG	__	__	__	__	__	__	__	__	GG

	71	72	73	74	75	76	77	78	79	80
_Input profile	AA	GG	GG	CC	AA	CC	GG	AA	GG	AA	X_X	X_X	X_X	X_X
1._GC-01-042-2-19	TT	CC	GG	CC	TT	__	CC	AA	CC	AA	X_X	X_X	X_X	X_X
2._GC-01-042-2-19	TT	CC	GG	CC	TT	CC	CC	AA	CC	AA	X_X	X_X	X_X	X_X
3._GC-01-042-2-19	TT	CC	GG	CC	TT	CC	CC	AA	CC	AA	X_X	X_X	X_X	X_X
4._GC-01-042-2-19	TT	CC	GG	CC	TT	CC	CC	AA	CC	AA	X_X	X_X	X_X	X_X
5._GC-01-042-2-19	TT	CC	GG	CC	TT	CC	CC	AA	CC	AA	X_X	X_X	X_X	X_X
6._GC-01-042-2-19	TT	CC	GG	CC	TT	CC	CC	AA	CC	AA	X_X	X_X	X_X	X_X
7._GC-01-042-2-19	TT	CC	GG	CC	TT	CC	CC	AA	CC	AA	X_X	X_X	X_X	X_X
8._GC-01-042-2-19	TT	CC	GG	CC	TT	CC	CC	AA	CC	AA	X_X	X_X	X_X	X_X
9._RB_39_[BRA]	TT	__	__	__	TT	CC	__	AA	CC	AA	X_X	X_X	X_X	X_X
10._RB_39_[BRA]	TT	__	__	__	TT	CC	__	AA	CC	AA	X_X	X_X	X_X	X_X
11._RB_39_[BRA]	TT	__	__	__	TT	CC	__	AA	CC	AA	X_X	X_X	X_X	X_X
12._RB_39_[BRA]	TT	__	__	__	TT	CC	__	AA	CC	AA	X_X	X_X	X_X	X_X
13._RB_39_[BRA]	TT	__	__	__	TT	CC	__	AA	CC	AA	X_X	X_X	X_X	X_X
14._RB_39_[BRA]	TT	__	__	__	TT	CC	__	AA	CC	AA	X_X	X_X	X_X	X_X
15._RB_39_[BRA]	TT	__	__	__	TT	CC	__	AA	CC	AA	X_X	X_X	X_X	X_X
16._GC-01-042-2-19	TT	CC	GG	CC	TT	CC	CC	AA	CC	AA	X_X	X_X	X_X	X_X
17._RB_39_[BRA]	TT	__	__	__	TT	__	__	AA	CC	AA	X_X	X_X	X_X	X_X
18._RB_39_[BRA]	TT	__	__	__	TT	CC	__	AA	CC	AA	X_X	X_X	X_X	X_X
19._RB_39_[BRA]	TT	__	__	__	TT	GG	__	__	CC	__	X_X	X_X	X_X	X_X
20._RB_39_[BRA]	TT	__	__	__	TT	GG	__	AA	CC	AA	X_X	X_X	X_X	X_X
21._GC-01-042-2-19	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X	X_X
22._RB_39_[BRA]	CC	__	__	__	CC	GG	__	AA	CC	GG	X_X	X_X	X_X	X_X

Input profile: RB_39_[BRA] GC-01-42-2-19

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 2, Rep: 15, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

1._RB_39_[BRA] GC-01-042-2-19

50 %
74 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP4

2._RB_39_[BRA] GC-01-042-2-19

49.4 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP3

3._RB_39_[BRA] GC-01-042-2-19

49.4 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

4._RB_39_[BRA] GC-01-042-2-19

49.4 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

5._RB_39_[BRA] GC-01-042-2-19

49.4 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

6._RB_39_[BRA] GC-01-042-2-19

49.4 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

7._RB_39_[BRA] GC-01-042-2-19

49.4 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._RB_39_[BRA] GC-01-042-2-19

49.4 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

9._RB_39_[BRA]

47 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 3 > FP

Dapeng Zhang, 2016

10._RB_39_[BRA]

47 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 11 > F

Dapeng Zhang, 2016

11._RB_39_[BRA]

47 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 1 > FP

Dapeng Zhang, 2016

12._RB_39_[BRA]

47 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 10

Dapeng Zhang, 2016

13._RB_39_[BRA]

47 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 9

Dapeng Zhang, 2016

14._RB_39_[BRA]

47 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 4

Dapeng Zhang, 2016

15._RB_39_[BRA]

47 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 2

Dapeng Zhang, 2016

16._RB_39_[BRA] GC-01-042-2-19

46.9 %
65 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

17._RB_39_[BRA]

45 %
30 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 12 > F

Dapeng Zhang, 2016

18._RB_39_[BRA]

44.8 %
29 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 5

Dapeng Zhang, 2016

19._RB_39_[BRA]

44.4 %
27 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

20._RB_39_[BRA]

43.3 %
30 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

21._RB_39_[BRA] GC-01-042-2-19

35.7 %
77 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

22._RB_39_[BRA]

31.3 %
32 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 13

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP1442	24	TcSNP1484	25	TcSNP150
26	TcSNP151	27	TcSNP1520	28	TcSNP154	29	TcSNP174	30	TcSNP193
31	TcSNP226	32	TcSNP230	33	TcSNP240	34	TcSNP242	35	TcSNP25
36	TcSNP28	37	TcSNP316	38	TcSNP32	39	TcSNP329	40	TcSNP364
41	TcSNP372	42	TcSNP413	43	TcSNP418	44	TcSNP42	45	TcSNP429
46	TcSNP430	47	TcSNP448	48	TcSNP497	49	TcSNP521	50	TcSNP529
51	TcSNP547	52	TcSNP560	53	TcSNP561	54	TcSNP577	55	TcSNP591
56	TcSNP60	57	TcSNP602	58	TcSNP619	59	TcSNP653	60	TcSNP689
61	TcSNP723	62	TcSNP731	63	TcSNP75	64	TcSNP751	65	TcSNP776
66	TcSNP799	67	TcSNP823	68	TcSNP836	69	TcSNP860	70	TcSNP872
71	TcSNP891	72	TcSNP894	73	TcSNP899	74	TcSNP90	75	TcSNP917
76	TcSNP929	77	TcSNP944	78	TcSNP953	79	TcSNP994	80	TcSNP998