SNP Profiles of SIAL-88   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCAAAAAAGGAACCAAGGAAAAAACC
1._NA
CCCCAAAATTCCAAGGAACCAATTTTGG
2._GC-01-052-3-07
CCCCAAAATTCCAAGGAACCAATTTTGG
3._NA
CCCCAAAATTCCAAGGAACCAATTTTGG
4._NA
CCCCAAAATTCCAAGGAACCAATTTTGG
5._GC-01-052-3-07
CCCCAAAATTCCAAGGAACCAATTTTGG
6._GC-01-052-3-07
CCCCAAAATTCCAAGGAACCAATTTTGG
7._GC-01-052-3-07
CCCCAAAATTCCAAGGAACCAATTTTGG
8._NA
CCACAAAATTCCAAGGAACCAATTTTGG
9._GC-01-052-3-07
CCACAAAATTCCAAGGAACCAATTTTGG
10._NA
CCACAAAATTCCAAGGAACCAATTTTGG
11._NA
CCACAAAATTCCAAGGAACCAATTTTGG
12._NA
CCACAAAATTCCAAGGAACCAATTTTGG
13._NA
CCACAAAATTCCAAGGAACCAATTTTGG
14._NA
CCACAAAATTCCAAGGAACCAATTTTGG
15._NA
CCACAAAATTCCAAGGAACCAATTTTGG
16._GC-01-052-3-07
CCACAAAATTCCAAGGAACCAATTTTGG
17._NA
CCACAAAATTCCAAGGAACCAATTTTGG
18._GC-01-052-3-07
CCACAAAATTCCAAGGAACCAATTTTGG
19._GC-01-052-3-07
ACACAGCCTTCCAGGGAACCGGTTCTGT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGAAGGAAAAGGAAAAAAGGCCAAAAGG
1._NA
CTTTCCTTAAGGTTTTAACCGGAATTCC
2._GC-01-052-3-07
CTTTCCTTAAGGTTTTAACCGGAATT__
3._NA
CTTTCCTTAAGGTTTTAACCGGAATTCC
4._NA
CTTTCCTTAAGGTTTTAACCGGAATTCC
5._GC-01-052-3-07
CTTTCCTTAAGGTTTTAACCGGAATTCC
6._GC-01-052-3-07
CTTTCCTTAAGGTTTTAACCGGAATTCC
7._GC-01-052-3-07
CTTTCCTTAAGGTTTTAACCGGAATTCC
8._NA
CT__CCTTAAGGTTTTACCCGGAGTTCC
9._GC-01-052-3-07
CTTTCCTTAAGGTTTTACCCGGAGTTCC
10._NA
CTTTCCTTAAGGTTTTACCCGGAGTTCC
11._NA
CTTTCCTTAAGGTTTTACCCGGAGTTCC
12._NA
CTTTCCTTAAGGTTTTACCCGGAGTTCC
13._NA
CTTTCCTTAAGGTTTTACCCGGAGTTCC
14._NA
CTTTCCTTAAGGTTTTACCCGGAGTTCC
15._NA
CTTTCCTTAAGGTTTTACCCGGAGTTCC
16._GC-01-052-3-07
CTTTCCTTAAGGTTTTACCCGGAGTTCC
17._NA
CTTTCCTTAAGGTTTT__CCGGAGTTCC
18._GC-01-052-3-07
CTTTCCTTAAGGTTTTACCCGGAGTTCC
19._GC-01-052-3-07
TTTTTTTTACGGTTTT__CCGGAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGAAGGAAGGGGGGCCTTTTGGGG
1._NA
TTAAGGAACCAAGGCCGGGG__TTGGGG
2._GC-01-052-3-07
TTAAGGAACCAAGGCCGGGGAATTGGGG
3._NA
TTAAGGAACCAAGGCCGGGGAATTGGGG
4._NA
TTAAGGAACCAAGGCCGGGGAATTGGGG
5._GC-01-052-3-07
TTAAGGAACCAAGGCCGGGGAATTGGGG
6._GC-01-052-3-07
TTAAGGAACCAAGGCCGGGGAATTGGGG
7._GC-01-052-3-07
TTAAGGAACCAAGGCCGGGGAATTGGGG
8._NA
TTAAGGAACCAAGGCCGGGGAATTGGGG
9._GC-01-052-3-07
TTAAGGAACCAAGGCCGGGGAATTGGGG
10._NA
TTAAGGAACCAAGGCCGGGGAATTGGGG
11._NA
TTAAGGAACCAAGGCCGGGGAATTGGGG
12._NA
TTAAGGAACCAAGGCCGGGGAATTGGGG
13._NA
TTAAGGAACCAAGGCCGGGGAATTGGGG
14._NA
TTAAGGAACCAAGGCCGGGGAATTGGGG
15._NA
TTAAGGAACCAAGGCCGGGGAATTGGGG
16._GC-01-052-3-07
TTAAGGAACCAAGGCCGGGGAATTGGGG
17._NA
TTAAGGAACCAAGGCCGGGGAATTGGGG
18._GC-01-052-3-07
TTAAGGAACC__GGCCGGGGAATTGGGG
19._GC-01-052-3-07
CCATGGAACCAAGGCCGGGGAATTGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAGGGGGGTTGGAACCCCGGAAAACC
1._NA
AATTGGGGGGTTCC__CCCCGGTTAACC
2._GC-01-052-3-07
AATTGGGGGGTTCC__CCCCGGTTAACC
3._NA
AATTGGGGGGTTCC__CCCCGGTTAACC
4._NA
AATTGGGGGGTTCC__CCCCGGTTAACC
5._GC-01-052-3-07
AATTGGGGGGTTCC__CCCCGGTTAACC
6._GC-01-052-3-07
AATTGGGGGGTTCC__CCCCGGTTAACC
7._GC-01-052-3-07
AATTGGGGGGTTCC__CCCCGGTTAACC
8._NA
AACTGGGGGGTTCC__CCCCGGTTAACG
9._GC-01-052-3-07
AACTGGGGGGTTCC__CCCCGGTTAACG
10._NA
AACTGGGGGGTTCC__CCCCGGTTAACG
11._NA
AACTGGGGGGTTCC__CCCCGGTTAACG
12._NA
AACTGGGGGGTTCC__CCCCGGTTAACG
13._NA
AACTGGGGGGTTCC__CCCCGGTTAACG
14._NA
AACTGGGGGGTTCC__CCCCGGTTAACG
15._NA
AACTGGGGGGTTCC__CCCCGGTTAACG
16._GC-01-052-3-07
AACTGGGGGGTTCC__CCCCGGTTAACG
17._NA
AACTGGGGGGTTCC__CCCCGGTTAACG
18._GC-01-052-3-07
AACTGGGGGGTTCC__CCCCGGTTAACG
19._GC-01-052-3-07
AATTGGGGGGATCC__CCACAATTAGGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AAGGAAAAGGAACCGGAAAAAAAAAACC
1._NA
AACCTTTTAAAAGGGGTTTTTTTTAAGG
2._GC-01-052-3-07
AACCTTTTAAAAGGGGTTTTTTTTAAGG
3._NA
AACCTTTTAAAAGGGGTTTTTTTTAAGG
4._NA
AACCTTTTAAAAGGGGTTTTTTTTAAGG
5._GC-01-052-3-07
AACCTTTTAAAAGGGGTTTTTTTTAAGG
6._GC-01-052-3-07
AACCTTTTAAAAGGGGTTTTTTTTAAGG
7._GC-01-052-3-07
AACCTTTTAAAAGGGGTTTTTTTTAAGG
8._NA
ACCCTTTTAAAAGGGGTTTTGTTTAAGG
9._GC-01-052-3-07
ACCCTTTTAAAAGGGGTTTT__TTAAGG
10._NA
ACCCTTTTAAAAGGGGTTTTGTTTAAGG
11._NA
ACCCTTTTAAAAGGGGTTTTGTTTAAGG
12._NA
ACCCTTTTAAAAGGGGTTTTGTTTAAGG
13._NA
ACCCTTTTAAAAGGGGTTTTGTTTAAGG
14._NA
ACCCTTTTAAAAGGGGTTTTGTTTAAGG
15._NA
ACCCTTTTAAAAGGGGTTTTGTTTAAGG
16._GC-01-052-3-07
ACCCTTTTAAAAGGGGTTTTGTTTAAGG
17._NA
ACCCTTTTAAAAGGGGTTTTGTTTAAGG
18._GC-01-052-3-07
ACCCTTTTAAAAGGGGTTTTGTTTAAGG
19._GC-01-052-3-07
ACCCCCTTAAAAGGGGTTTTGGTTCCGG
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
1._NA
__GGCCCCAACCTTGGCCAATTGGX_XX_X
2._GC-01-052-3-07
__GGCCCCAACCTTGGCCAATTGGX_XX_X
3._NA
__GGCCCCAACCTTGGCCAATTGGX_XX_X
4._NA
__GGCCCCAACCTTGGCCAATTGGX_XX_X
5._GC-01-052-3-07
__GGCCCCAACCTTGGCCAATTGGX_XX_X
6._GC-01-052-3-07
__GGCCCCAACCTTGGCCAATTGGX_XX_X
7._GC-01-052-3-07
__GGCCCCAACCTTGGCCAATTGGX_XX_X
8._NA
__GGCCCCAACCTTCGCCAATTGGX_XX_X
9._GC-01-052-3-07
__GGCCCCAACCTTCGCCAATTGGX_XX_X
10._NA
__GGCCCCAACCTTCGCCAATTGGX_XX_X
11._NA
__GGCCCCAACCTTCGCCAATTGGX_XX_X
12._NA
__GGCCCCAACCTTCGCCAATTGGX_XX_X
13._NA
__GGCCCCAACCTTCGCCAATTGGX_XX_X
14._NA
__GGCCCCAACCTTCGCCAATTGGX_XX_X
15._NA
__GGCCCCAACCTTCGCCAATTGGX_XX_X
16._GC-01-052-3-07
__GGCCCCAACCTTCGCCAATTGGX_XX_X
17._NA
__GGCCCCAACCTTCGCCAATTGGX_XX_X
18._GC-01-052-3-07
__GGCCCCAACCTTCGCCAATTGGX_XX_X
19._GC-01-052-3-07
AAGGCCCCGGCCTTCCCCAACTAAX_XX_X

Input profile: SIAL_88 GC-01-52-3-7

 
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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 7, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._SIAL_88 NA

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._SIAL_88 GC-01-052-3-07

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

3._SIAL_88 NA

47.5 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._SIAL_88 NA

47.5 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

5._SIAL_88 GC-01-052-3-07

47.5 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._SIAL_88 GC-01-052-3-07

47.5 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

7._SIAL_88 GC-01-052-3-07

47.5 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._SIAL_88 NA

44.3 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

9._SIAL_88 GC-01-052-3-07

44.3 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

10._SIAL_88 NA

43.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._SIAL_88 NA

43.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

12._SIAL_88 NA

43.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._SIAL_88 NA

43.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._SIAL_88 NA

43.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._SIAL_88 NA

43.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._SIAL_88 GC-01-052-3-07

43.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

17._SIAL_88 NA

43.7 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._SIAL_88 GC-01-052-3-07

43 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

19._SIAL_88 GC-01-052-3-07

31.3 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998