SNP Profiles of NACIONAL   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCAAAAAAGGAACCAAGGAAAAAACC
1._SIC_628___
CCCCAAAATTCCAAGGAACCAATTTTGG
2._SIC_628___
CCCCAAAATTCCAAGGAACCAATTTTGG
3._SIC_628___
CCCCAAAATTCCAAGGAACCAATTTTGG
4._SIC_628___
CCCCAAAATTCCAAGGAACCAATTTTGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGAAGGAAAAGGAAAAAAGGCCAAAAGG
1._SIC_628___
CCTTCCTTAAGGTTTTAACCGGAATTCC
2._SIC_628___
CCTTCCTTAAGGTTTTAACCGGAATTCC
3._SIC_628___
CCTTCCTTAAGGTTTTAACCGGAATTCC
4._SIC_628___
CCTTCCTTAAGGTTTTAACCGGAATTCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGAAGGAAGGGGGGTTTTGGGGAA
1._SIC_628___
TT__GGAACCAA____GGAATTGGGGAA
2._SIC_628___
TT__GGAACCAA__CCGGAATTGGGGAA
3._SIC_628___
TT__GGAACCAA__CCGGAATTGGGGAA
4._SIC_628___
TT__GGAACCAA__CCGGAATTGGGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGGGGGTTGGAACCCCGGAAAACCCC
1._SIC_628___
__GGGGGGTTCCTTCCCCGGTTAACCCC
2._SIC_628___
TTGGGGGGTTCCTTCCCCGGTTAACCCC
3._SIC_628___
TTGGGGGGTTCCTTCCCCGGTTAACCCC
4._SIC_628___
TTGGGGGGTTCCTTCCCCGGTTAACCCC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGAAAAGGAACCGGAAAAAAAAAACCGG
1._SIC_628___
CCTTTTAAAAGGGGTTTTTTTT__GG__
2._SIC_628___
CCTTTTAAAAGGGGTT__TTTTAAGG__
3._SIC_628___
CCTTTTAAAAGGGGTTTTTTTTAAGG__
4._SIC_628___
CCTTTTAAAAGGGGTTTTTTTTAAGG__
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
1._SIC_628___
GGCCCCAACC__GGCCAATTGGX_XX_XX_X
2._SIC_628___
GGCCCCAACCTTGGCCAATTGGX_XX_XX_X
3._SIC_628___
GGCCCCAACCTTGGCCAATTGGX_XX_XX_X
4._SIC_628___
GGCCCCAACCTTGGCCAATTGGX_XX_XX_X

Input profile: SIC_628 GC-06-15-1-15

 
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Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 15, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._SIC_628 GC-06-15-1-15

48.6 %
74 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 15, Tree: PL6
Notes: PL6 FP4
 Mars, 2018

2._SIC_628 GC-06-15-1-15

48.1 %
77 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 15, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

3._SIC_628 GC-06-15-1-15

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 15, Tree: PL2
Notes: PL2 FP3
 Mars, 2018

4._SIC_628 GC-06-15-1-15

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 15, Tree: PL5
Notes: PL5 FP2
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998