SNP Profiles of GU 123 /V   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCAATTTTGGAACCGGCCGGGGAACC
1._GU_114_/P___
____AATTTT__AACCGGCC____AA__
2._GU_114_/P___
____AATTTT__AACCGGCC____AA__
3._GU_114_/P___
____AATTTT__AACCGGCC____AA__
4._GU_114_/P___
____AATTTT__AACCGGCC____AA__
5._GU_114_/P___
____AATTTT__AACCGGCC____AA__
6._GU_114_/P___
____AATT____AACCGGCC____AA__
7._GU_114_/P___
____AATTTT__AACCGGCC____AA__
8._GU_114_/P___
____AATTTT__AACCGGCC____AA__
9._GU_114_/P___
____AATTTT__AA__GGCC____AA__
10._GU_114_/P___
____AA__________GG__GG______
11._GU_114_/P___
____AA__TTGGAAGGGG____GGAACC
12._GU_114_/P___
AACCAAAAAAGGAAGGGGGGGGGGAAGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGAACCGGCCCCCCCTCCGGAATTAAGG
1._GU_114_/P___
AGAACCGGCCCC__CT__GG______GG
2._GU_114_/P___
AGAACCGGCCCC__CT__GG______GG
3._GU_114_/P___
AGAACCGGCCCC__CT__GG______GG
4._GU_114_/P___
AGAACCGGCCCC__CT__GG______GG
5._GU_114_/P___
AGAACCGGCCCC__CT__GG______GG
6._GU_114_/P___
AGAACCGGCCCC__CT__GG______GG
7._GU_114_/P___
AGAACCGGCCCC__CT__GG______GG
8._GU_114_/P___
AGAACCGGCCCC__CT__GG______GG
9._GU_114_/P___
AGAACCGGCCCC__CT__GG______GG
10._GU_114_/P___
__AA____CCCCCC__CCGGAA__AAGG
11._GU_114_/P___
________CCCCCC____________CC
12._GU_114_/P___
__AA__CCCCCCGGAG__CCAAAAAACC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAGCCCCGGGGTTTTCTCCCCCCGG
1._GU_114_/P___
__CCAG__CC______TT____CCCCGG
2._GU_114_/P___
__CCAG__CC______TT____CCCCGG
3._GU_114_/P___
__CCAG__CC______TT____CCCCGG
4._GU_114_/P___
__CCAG__CC______TT____CCCCGG
5._GU_114_/P___
__CCAG__CC______TT____CCCCGG
6._GU_114_/P___
__CCAG__CC______TT____CCCCGG
7._GU_114_/P___
__CC____CC______TT____CCCCGG
8._GU_114_/P___
__CCAG__CC______TT____CC__GG
9._GU_114_/P___
__CCAG__CC______TT____CCCCGG
10._GU_114_/P___
____AGCC________TT______CC__
11._GU_114_/P___
GGCC____CC__GGTT____CC__GG__
12._GU_114_/P___
__GGAG__GGCCGG__AAAGGGGGGGGG

Input profile: GU_114_/P RUQ_813

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._GU_114_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 1
 Dapeng Zhang, 2016

2._GU_114_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 3
 Dapeng Zhang, 2016

3._GU_114_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 9
 Dapeng Zhang, 2016

4._GU_114_/P

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 7
 Dapeng Zhang, 2016

5._GU_114_/P RUQ_813

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._GU_114_/P

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 2
 Dapeng Zhang, 2016

7._GU_114_/P

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 5
 Dapeng Zhang, 2016

8._GU_114_/P

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 12
 Dapeng Zhang, 2016

9._GU_114_/P

identical
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X3 Y18
 Dapeng Zhang, 2016

10._GU_114_/P RUQ_813

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

11._GU_114_/P RUQ_813

80 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

12._GU_114_/P RUQ_813

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484