SNP Profiles of GU 123 /V   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCAATTTTGGAACCGGCCGGGGAACC
1._GU_133_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
2._GU_133_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
3._GU_133_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
4._GU_133_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
5._GU_133_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
6._GU_133_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
7._GU_133_/C___
TTCCAATTTTGGAACC__CCGGGGAACC
8._GU_133_/C___
TTCCAATTTTGG__CCGGCCGGGGAACC
9._GU_133_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
10._GU_133_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
11._GU_133_/C___
TTCCAATTTTGGAACC__CCGGGGAACC
12._GU_133_/C___
____AATTTT__AACCGGCC____AA__
13._GU_133_/C___
____AATTTT__AACCGGCC____AA__
14._GU_133_/C___
____AATTTT__AACCGGCC____AA__
15._GU_133_/C___
____AATTTT__AACCGGCC____AA__
16._GU_133_/C___
____AATTTT__AACCGGCC____AA__
17._GU_133_/C___
____AATTTT__AACCGGCC____AA__
18._GU_133_/C___
____AATTTT__AACC__CC____AA__
19._GU_133_/C___
____AATTTT____CCGGCC____AA__
20._GU_133_/C___
____AATTTT__AACCGGCC____AA__
21._GU_133_/C___
____AATTTT__AACCGGCC____AA__
22._GU_133_/C___
____AATTTT__AACC__CC____AA__
23._GU_133_/C___
____AA__________GG__GG______
24._GU_133_/C___
____AAGTTT__AACCGGCC____AA__
25._GU_133_/C___
____AA__TTGGAAGGGG____GGAACC
26._GU_133_/C___
AACCAAAAAAGGAAGGGGGGGGGGAAGG
27._GU_133_/C___
AACCAAAAAAGGAAGGGGGGGGGGAAGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGAACCGGCCACCCCCCCGGAATTAAGG
1._GU_133_/C___
GGAACCGGCCACCCCCCCGGAATTAAGG
2._GU_133_/C___
GGAACCGGCCACCCCCCCGGAATTAAGG
3._GU_133_/C___
GGAACCGGCCACCCCCCCGGAATTAAGG
4._GU_133_/C___
GGAACCGGCCACCCCCCCGGAATTAAGG
5._GU_133_/C___
GGAACCGGCCACCCCCCCGGAATTAAGG
6._GU_133_/C___
GGAACCGGCCACCCCC__GGAATTAAGG
7._GU_133_/C___
GGAACCGGCCACCCCCCCGGAATTAAGG
8._GU_133_/C___
GGAACCGGCCACCCCCCCGGAATTAAGG
9._GU_133_/C___
GGAA__GGCCACCCCCCCGGAATTAAGG
10._GU_133_/C___
GGAACCGGCCACCCCCCCGGAATTAAGG
11._GU_133_/C___
GGAACCGGCCACCCCCCCGGAATTAAGG
12._GU_133_/C___
GGAACCGGCCAC__CC__GG______GG
13._GU_133_/C___
GGAACCGGCCAC__CC__GG______GG
14._GU_133_/C___
GGAACCGGCCAC__CC__GG______GG
15._GU_133_/C___
GGAACCGGCCAC__CC__GG______GG
16._GU_133_/C___
GGAACCGGCCAC__CC__GG______GG
17._GU_133_/C___
GGAACCGGCCAC__CC__GG______GG
18._GU_133_/C___
GGAACCGGCCAC__CC__GG______GG
19._GU_133_/C___
GGAACCGGCCAC__CC__GG______GG
20._GU_133_/C___
GGAA__GGCCAC__CC__GG______GG
21._GU_133_/C___
GGAACCGGCCAC__CC__GG______GG
22._GU_133_/C___
GGAACCGGCCAC__CC__GG______GG
23._GU_133_/C___
__AA____CCACCC__CCGGAA__AAGG
24._GU_133_/C___
GGAACCGGCCAC__CC__GG______GG
25._GU_133_/C___
________CCACCC____________CC
26._GU_133_/C___
__AA__CCCCACGGGG__CCAAAAAACC
27._GU_133_/C___
__AA__CCCCACGGGG__CCAAAAAACC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
1._GU_133_/C___
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
2._GU_133_/C___
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
3._GU_133_/C___
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
4._GU_133_/C___
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
5._GU_133_/C___
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
6._GU_133_/C___
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
7._GU_133_/C___
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
8._GU_133_/C___
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
9._GU_133_/C___
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
10._GU_133_/C___
CCCCGGCCCCGGGGTT__TTCCCCCGGG
11._GU_133_/C___
CC__GGCCCCGGGGTT__TTCCCCCGGG
12._GU_133_/C___
__CCGG__CC______TT____CCCGGG
13._GU_133_/C___
__CCGG__CC______TT____CCCGGG
14._GU_133_/C___
__CCGG__CC______TT____CCCGGG
15._GU_133_/C___
__CCGG__CC______TT____CCCGGG
16._GU_133_/C___
__CCGG__CC______TT____CCCGGG
17._GU_133_/C___
__CCGG__CC______TT____CCCGGG
18._GU_133_/C___
__CCGG__CC______TT____CCCGGG
19._GU_133_/C___
__CCGG__CC______TT____CCCGGG
20._GU_133_/C___
__CCGG__CC______TT____CCCGGG
21._GU_133_/C___
__CCGG__CC____________CCCGGG
22._GU_133_/C___
____GG__CC____________CCCGGG
23._GU_133_/C___
____GGCC________TT______CG__
24._GU_133_/C___
__CCGG__CC______TT____CCCGGG
25._GU_133_/C___
GGCC____CC__GGTT____CC__CG__
26._GU_133_/C___
__GGGG__GGCCGG__AAAAGGGGCGGG
27._GU_133_/C___
__GGGG__GGCCGG__AAAAGGGGCGGG

Input profile: GU_133_/C RUQ_190

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._GU_133_/C GC-08-164-4-07

identical
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._GU_133_/C GC-01-116-6-13

identical
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

3._GU_133_/C GC-01-116-6-13

identical
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

4._GU_133_/C GC-01-116-6-13

identical
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._GU_133_/C GC-08-164-4-07

identical
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

6._GU_133_/C GC-08-164-4-07

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._GU_133_/C GC-01-116-6-13

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._GU_133_/C GC-08-164-4-07

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._GU_133_/C GC-08-164-4-07

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._GU_133_/C GC-08-164-4-07

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._GU_133_/C GC-01-116-6-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

12._GU_133_/C

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016

13._GU_133_/C

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

14._GU_133_/C

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

15._GU_133_/C

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

16._GU_133_/C

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

17._GU_133_/C

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

18._GU_133_/C

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

19._GU_133_/C

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

20._GU_133_/C

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

21._GU_133_/C

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

22._GU_133_/C

identical
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

23._GU_133_/C RUQ_190

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
GU
0.998

24._GU_133_/C RUQ_190

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

25._GU_133_/C RUQ_190

85 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

26._GU_133_/C GC-01-116-6-13

47.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._GU_133_/C MITC-000670

47.2 %
36 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484