SNP Profiles of SC 9 [UNK] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	CC	AA	TT	TT	GG	AA	GG	AA	TT	GG	GG	AA	GG
1._AMAZ_5_/2___	__	__	AA	__	__	__	__	__	AA	__	GG	__	__	__
2._AMAZ_5_/2___	CT	CC	AA	TT	TT	GG	AA	GG	AA	TT	GG	GG	AA	GG
3._AMAZ_5_/2___	CT	CC	AA	TT	TT	GG	AA	GG	AA	TT	GG	GG	AA	GG
4._AMAZ_5_/2___	CT	CC	AA	TT	TT	GG	AA	GG	AA	TT	GG	GG	AA	GG
5._AMAZ_5_/2___	CT	CC	AA	TT	TT	GG	AA	GG	AA	TT	GG	GG	AA	GG
6._AMAZ_5_/2___	__	__	AA	TT	TT	__	AA	GG	AA	TT	__	__	AA	__
7._AMAZ_5_/2___	__	__	AA	TT	TT	__	AA	GG	AA	TT	__	__	AA	__
8._AMAZ_5_/2___	__	__	AA	TT	TT	__	AA	GG	AA	TT	__	__	AA	__
9._AMAZ_5_/2___	__	__	AA	TT	TT	__	AA	GG	AA	TT	__	__	AA	__
10._AMAZ_5_/2___	__	__	AA	TT	TT	__	AA	GG	AA	TT	__	__	AA	__
11._AMAZ_5_/2___	__	__	CC	TT	CC	__	AA	CC	AA	CC	__	__	AA	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	CC	GG	GG	AA	CT	CT	TT	GG	AA	TT	CC	CC
1._AMAZ_5_/2___	__	CC	__	__	GG	AA	CT	__	TT	GG	AA	__	CC	CC
2._AMAZ_5_/2___	AA	CC	CC	GG	GG	AA	CT	CT	TT	GG	AA	TT	CC	CC
3._AMAZ_5_/2___	AA	CC	CC	GG	GG	AA	CT	CT	TT	GG	AA	TT	CC	CC
4._AMAZ_5_/2___	AA	CC	CC	GG	GG	AA	CT	CT	TT	GG	AA	TT	CC	CC
5._AMAZ_5_/2___	AA	CC	CC	GG	GG	AA	CT	CT	TT	GG	AA	TT	CC	CC
6._AMAZ_5_/2___	AA	CC	CC	GG	GG	AA	__	CT	__	GG	__	__	__	CC
7._AMAZ_5_/2___	AA	CC	CC	GG	GG	AA	__	CT	__	GG	__	__	__	CC
8._AMAZ_5_/2___	AA	CC	CC	GG	GG	AA	__	CT	__	GG	__	__	__	CC
9._AMAZ_5_/2___	AA	CC	CC	GG	GG	AA	__	CT	__	GG	__	__	__	CC
10._AMAZ_5_/2___	AA	CC	CC	GG	GG	AA	__	CT	__	GG	__	__	__	CC
11._AMAZ_5_/2___	AA	CC	TT	TT	CC	AA	__	TT	__	GG	__	__	__	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	TT	GG	AA	CC	CT	GG	GG	TT	TT	TT	CC	TT	CC
1._AMAZ_5_/2___	__	__	GG	AA	CC	__	__	__	__	TT	__	__	__	CC
2._AMAZ_5_/2___	CC	CT	GG	AA	CC	CT	GG	GG	TT	TT	TT	CC	TT	CC
3._AMAZ_5_/2___	CC	CT	GG	AA	CC	CT	GG	GG	TT	TT	TT	CC	TT	CC
4._AMAZ_5_/2___	CC	CT	GG	AA	CC	CT	GG	GG	TT	TT	TT	CC	TT	CC
5._AMAZ_5_/2___	CC	CT	GG	AA	CC	CT	GG	GG	TT	TT	TT	CC	TT	CC
6._AMAZ_5_/2___	__	CT	__	AA	__	CT	__	__	__	TT	__	__	TT	CC
7._AMAZ_5_/2___	__	CT	__	AA	__	CT	__	__	__	TT	__	__	TT	CC
8._AMAZ_5_/2___	__	CT	__	AA	__	CT	__	__	__	TT	__	__	TT	CC
9._AMAZ_5_/2___	__	CT	__	AA	__	CT	__	__	__	TT	__	__	TT	CC
10._AMAZ_5_/2___	__	CT	__	AA	__	TT	__	__	__	TT	__	__	TT	CC
11._AMAZ_5_/2___	__	CC	__	GG	__	CC	__	__	__	TT	__	__	CC	GG

	43
_Input profile	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._AMAZ_5_/2___	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._AMAZ_5_/2___	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._AMAZ_5_/2___	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._AMAZ_5_/2___	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._AMAZ_5_/2___	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._AMAZ_5_/2___	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._AMAZ_5_/2___	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._AMAZ_5_/2___	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._AMAZ_5_/2___	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._AMAZ_5_/2___	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._AMAZ_5_/2___	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: AMAZ_5_/2 RUQ_93

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._AMAZ_5_/2 RUQ_93

identical
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Cri
0.063 IMC
0.441 LCT
0.245 Nan
0.200

2._AMAZ_5_/2 GC-03-008-1-08

98.8 %
43 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

3._AMAZ_5_/2 GC-03-008-1-08

98.8 %
43 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

4._AMAZ_5_/2 GC-03-008-1-08

98.8 %
43 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

5._AMAZ_5_/2 GC-03-008-1-08

98.8 %
43 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP1

6._AMAZ_5_/2

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 9 > FP

Dapeng Zhang, 2016

7._AMAZ_5_/2

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 8 > FP

Dapeng Zhang, 2016

8._AMAZ_5_/2

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 5

Dapeng Zhang, 2016

9._AMAZ_5_/2

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 2

Dapeng Zhang, 2016

10._AMAZ_5_/2 RUQ_93

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._AMAZ_5_/2

41.7 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A20 T1

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP899	32	TcSNP998	33	TcSNP999	34	TcSNP1060	35	TcSNP1063
36	TcSNP1111	37	TcSNP1126	38	TcSNP1253	39	TcSNP1309	40	TcSNP1439
41	TcSNP1442	42	TcSNP1458	43	TcSNP1484