SNP Profiles of NACIONAL View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
1._APA_4___	__	__	CC	__	__	__	__	__	AA	__	GG	__	__	__
2._APA_4___	__	__	CC	__	CC	GG	AA	GG	AA	__	__	GG	AA	CC
3._APA_4___	AA	CC	CC	AA	GG	GG	AA	GG	AA	GG	GG	GG	AA	GG
4._APA_4___	AA	CC	CC	AA	GG	GG	AA	GG	AA	GG	GG	GG	AA	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	TT	CC	AA	CC	CC	TT	GG	GG	TT	AA	GG	CC
1._APA_4___	__	AC	__	CC	AA	CC	__	TT	GG	GG	__	AA	GG	__
2._APA_4___	__	__	__	CC	AA	CC	__	__	__	__	__	__	CC	GG
3._APA_4___	__	CC	AA	CC	AA	GG	GG	__	CC	GG	AA	AA	CC	__
4._APA_4___	__	CC	AA	CC	AA	GG	GG	__	CC	GG	AA	AA	CC	__

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	CC	GG	TT	CC	GG	AA	TT	TT	CC	TT	CC	GG	AA	X_X
1._APA_4___	__	GG	TT	__	__	__	__	TT	__	__	__	GG	__	X_X
2._APA_4___	CC	__	__	CC	__	AA	TT	__	__	TT	__	CC	__	X_X
3._APA_4___	GG	GG	__	GG	CC	AA	__	AA	GG	AA	GG	CC	AA	X_X
4._APA_4___	GG	GG	__	GG	CC	AA	__	AA	GG	AA	GG	CC	AA	X_X

Input profile: APA_4 RUQ_843

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._APA_4 RUQ_843

96.9 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

View Data

Ame
0.631 Nan
0.142 Par
0.196

2._APA_4 APA4

80 %
20 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

3._APA_4 RUQ_843

44.4 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Mars, 2018

4._APA_4 APA_4_Fld#_26_Plt#_1

44.4 %
36 shared markers

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USDA-TARS, United States of America

Location: Field: 26, Tree: 1

Mars, 2018

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP560	18	TcSNP577	19	TcSNP591	20	TcSNP602
21	TcSNP619	22	TcSNP702	23	TcSNP723	24	TcSNP731	25	TcSNP799
26	TcSNP823	27	TcSNP872	28	TcSNP878	29	TcSNP891	30	TcSNP998
31	TcSNP999	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484

SNP Profiles of NACIONAL View Data

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Input profile: APA_4 RUQ_843

1._APA_4 RUQ_843

96.9 % 16 shared markers

2._APA_4 APA4

80 % 20 shared markers

3._APA_4 RUQ_843

44.4 % 36 shared markers

4._APA_4 APA_4_Fld#_26_Plt#_1

44.4 % 36 shared markers

96.9 %
16 shared markers

80 %
20 shared markers

44.4 %
36 shared markers

44.4 %
36 shared markers