SNP Profiles of POUND 18   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCCCTTCTGGACCCAGCTAGGGATCC
1._IMC_2___
____CCTTCT__ACCCAGCT____AT__
2._IMC_2___
____CCTTCT__ACCCAGCT____AT__
3._IMC_2___
____CCTTCT__ACCCAGCT____AT__
4._IMC_2___
____CCTTCT__ACCCAGCT____AT__
5._IMC_2___
____CCTTCT__ACCCAGCT____AT__
6._IMC_2___
TTCCCCTTCTGGACCCAGCTAGGGATCC
7._IMC_2___
TTCCCCTTCTGGACCCAGCTAGGGATCC
8._IMC_2___
TTCCCCTTCTGGACCCAGCTAGGGATCC
9._IMC_2___
TTCCCCTTCTGGACCCAGCTAGGGATCC
10._IMC_2___
____ACGTCT__AC____CT____AA__
11._IMC_2___
AACCCCAAAGGGACGGAGAGAGGGATGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGACCCGTCGACCTCCTTGTGGTTACCC
1._IMC_2___
AGACCCGTGGAC__CC__GT______CC
2._IMC_2___
AGACCCGTGGAC__CC__GT______CC
3._IMC_2___
AGACCCGTGGAC__CC__GT______CC
4._IMC_2___
AGACCCGTGGAC__CC__GT______CC
5._IMC_2___
AGACCCGTGGAC__CC__GT______CC
6._IMC_2___
AGACCCGTGGACCTCCCCGTGGTTACCC
7._IMC_2___
AGACCCGTGGACCTCCCCGTGGTTACCC
8._IMC_2___
AGACCCGTGGACCTCCCCGTGGTTACCC
9._IMC_2___
AGACCCGTGGACCTCCCCGTGGTTACCC
10._IMC_2___
AACCCTGGGGAA__CC__GG______CC
11._IMC_2___
__AC__ACCGACAGGG__ACGGAAACGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCTTAACCCCGGGGTTTTCTCCTTGGAG
1._IMC_2___
__TTAA__CC______TT____TTGGAG
2._IMC_2___
__TTAA__CC______TT____TTGGAG
3._IMC_2___
__TTAA__CC______TT____TTGGAG
4._IMC_2___
__TTAA__CC______TT____TTGGAG
5._IMC_2___
__CTAA__CC______TT____TTGGAG
6._IMC_2___
CCTTAACCCCGGGGTTTTTTCCTTGGAG
7._IMC_2___
CCTTAACCCCGGGGTTTTTTCCTTGGAG
8._IMC_2___
CCTTAACCCCGGGGTTTTTTCCTTGGAG
9._IMC_2___
CCTTAACCCCGGGGTTTTTTCCTTGGAG
10._IMC_2___
__TTAA__CC______GG____TTCGAG
11._IMC_2___
__AAAA__GGCCGG__AAAGGGAACCAG

Input profile: IMC_2 RUQ_828

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._IMC_2

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 5 > FP
 Dapeng Zhang, 2016

2._IMC_2

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 4 > FP
 Dapeng Zhang, 2016

3._IMC_2

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 8
 Dapeng Zhang, 2016

4._IMC_2

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 1
 Dapeng Zhang, 2016

5._IMC_2 RUQ_828

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._IMC_2 GC-04-042-3-06

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._IMC_2 GC-04-042-3-06

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

8._IMC_2 GC-04-042-3-06

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

9._IMC_2 GC-04-042-3-06

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._IMC_2

70.5 %
22 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A41 T8
 Dapeng Zhang, 2016

11._IMC_2 GC-04-42-3-6

44.4 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 3, Rep: 6, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484