SNP Profiles of POUND 18   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCACGTCTACCGAGCTGGGGAACCAA
1._IMC_20___
____AC________AG__GG________
2._IMC_20___
AACCACACAGACCGAGAGGGGGAAGG__
3._IMC_20___
AACCACACAGACCGAGAGGGGGAAGG__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ACCCGGCGACCTCCTTGGGGTTCCCCCC
1._IMC_20___
AC____GGACCT__TTGGGG__CCCC__
2._IMC_20___
AC__CCCGACAGGG__CCGGAACCGG__
3._IMC_20___
AC__CCCGACAGGG__CCGGAACCGG__
 29 30 31 32 33 34 35 36 37 38 39 40 41  
_Input profile
CCAACCCTGGGGTTGTCTCCTTGGAGX_X
1._IMC_20___
__AACC________GT______GG__X_X
2._IMC_20___
GGAA__AGCCGG__AAAGGGAACCAGX_X
3._IMC_20___
GGAA__AGCCGG__AAAGGGAACCAGX_X

Input profile: IMC_20 RUQ_985

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._IMC_20 RUQ_985

96.9 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._IMC_20 RUQ_985

45.7 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

3._IMC_20 MITC-000417

45.7 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP329
11TcSNP364 12TcSNP372 13TcSNP448 14TcSNP469 15TcSNP529
16TcSNP534 17TcSNP560 18TcSNP577 19TcSNP591 20TcSNP602
21TcSNP619 22TcSNP702 23TcSNP723 24TcSNP731 25TcSNP799
26TcSNP823 27TcSNP872 28TcSNP878 29TcSNP891 30TcSNP998
31TcSNP999 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484