SNP Profiles of LCT EEN 241 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	GG	TT	AA	CC	GG	AG	CC	AG	AG	TT	CC	GG
1._LCT_EEN_241	_	AA	GG	TT	_	CC	GG	AG	CC	_	_	TT	_	GG
2._LCT_EEN_241	_	AA	GG	TT	_	CC	GG	AG	CC	_	_	TT	_	GG
3._LCT_EEN_241	_	AA	GG	TT	_	CC	GG	AG	CC	_	_	TT	_	GG
4._LCT_EEN_241	_	AA	GG	TT	_	CC	GG	AG	CC	_	_	TT	_	GG
5._LCT_EEN_241	_	AA	GG	TT	_	CC	_	AG	CC	_	_	_	_	GG
6._GC-08-269-8-41	CC	AA	GG	TT	AA	CC	GG	AG	CC	AG	AG	TT	CG	GG
7._GC-08-269-8-41	CC	AA	GG	TT	AA	CC	GG	AG	CC	AG	AG	TT	CG	GG
8._GC-08-269-8-41	CC	AA	GG	TT	_	CC	GG	AG	CC	AG	AG	TT	CG	GG
9._GC-08-269-8-41	CC	AA	GG	TT	AA	CC	GG	AG	CC	AG	AG	TT	CG	GG
10._RUQ_185	_	AA	GG	TT	_	CC	GG	AG	CC	_	_	TT	_	GG
11._GC-08-269-8-41	CC	AA	GG	TT	_	CC	_	AG	CC	AG	AG	_	CG	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AC	CC	GG	GG	CC	CC	TT	CT	GG	AA	TT	CC	CG	GG
1._LCT_EEN_241	AC	CC	GG	GG	CC	_	TT	_	GG	_	_	_	CG	_
2._LCT_EEN_241	AC	CC	GG	GG	CC	_	TT	_	GG	_	_	_	CG	_
3._LCT_EEN_241	AC	CC	GG	GG	CC	_	TT	_	GG	_	_	_	CG	_
4._LCT_EEN_241	AC	CC	GG	GG	CC	_	TT	_	GG	_	_	_	CG	_
5._LCT_EEN_241	AC	CC	GG	GG	CC	_	TT	_	GG	_	_	_	CG	_
6._GC-08-269-8-41	AC	CC	GG	GG	CC	CC	TT	TT	GG	AA	TT	CC	CG	GG
7._GC-08-269-8-41	AC	CC	GG	GG	CC	CC	TT	TT	GG	AA	TT	CC	CG	GG
8._GC-08-269-8-41	AC	CC	GG	GG	CC	CC	TT	TT	GG	AA	TT	CC	CG	GG
9._GC-08-269-8-41	AC	CC	GG	GG	CC	CC	TT	TT	GG	AA	TT	CC	CG	GG
10._RUQ_185	AC	CC	GG	GG	CC	_	CT	_	GG	_	_	_	CG	_
11._GC-08-269-8-41	AC	CC	GG	GG	CC	CC	TT	TT	GG	AA	TT	CC	CG	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	TT	AA	CC	CC	GG	AG	TT	GG	CC	CC	TT	CC	GG	X_X
1._LCT_EEN_241	TT	AA	_	CC	_	_	_	GG	_	_	TT	CC	GG	X_X
2._LCT_EEN_241	TT	AA	_	CC	_	_	_	GG	_	_	TT	CC	GG	X_X
3._LCT_EEN_241	TT	AA	_	CC	_	_	_	GG	_	_	TT	CC	GG	X_X
4._LCT_EEN_241	TT	AA	_	CC	_	_	_	_	_	_	TT	CC	GG	X_X
5._LCT_EEN_241	TT	AA	_	CC	_	_	_	GG	_	_	TT	CC	GG	X_X
6._GC-08-269-8-41	TT	AA	CC	CC	GG	AG	TT	GG	_	CC	TT	CC	GG	X_X
7._GC-08-269-8-41	TT	AA	CC	CC	GG	AG	TT	GG	_	CC	TT	CC	GG	X_X
8._GC-08-269-8-41	TT	AA	CC	CC	GG	AG	TT	GG	_	CC	TT	CC	GG	X_X
9._GC-08-269-8-41	TT	AA	CC	CC	GG	AG	TT	_	_	CC	TT	CC	GG	X_X
10._RUQ_185	CT	AA	_	CC	_	_	_	GG	_	_	TT	CC	GG	X_X
11._GC-08-269-8-41	TT	AA	CC	CC	GG	AG	TT	GG	TT	CC	TT	CC	GG	X_X

Input profile: LCT_EEN_241 RUQ_185

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._LCT_EEN_241

identical
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 6

Dapeng Zhang, 2016

2._LCT_EEN_241

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8841 4

Dapeng Zhang, 2016

3._LCT_EEN_241

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8841 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._LCT_EEN_241

identical
23 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 3

Dapeng Zhang, 2016

5._LCT_EEN_241

identical
22 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 2

Dapeng Zhang, 2016

6._LCT_EEN_241 GC-08-269-8-41

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._LCT_EEN_241 GC-08-269-8-41

97.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

8._LCT_EEN_241 GC-08-269-8-41

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

9._LCT_EEN_241 GC-08-269-8-41

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

10._LCT_EEN_241 RUQ_185

95.8 %
24 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._LCT_EEN_241 GC-08-269-8-41

94.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP90	2	TcSNP144	3	TcSNP150	4	TcSNP151	5	TcSNP174
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP329
11	TcSNP364	12	TcSNP372	13	TcSNP448	14	TcSNP469	15	TcSNP529
16	TcSNP534	17	TcSNP560	18	TcSNP577	19	TcSNP591	20	TcSNP602
21	TcSNP619	22	TcSNP702	23	TcSNP723	24	TcSNP731	25	TcSNP799
26	TcSNP823	27	TcSNP872	28	TcSNP878	29	TcSNP891	30	TcSNP998
31	TcSNP999	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484