SNP Profiles of LCT EEN 37 /F   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
AAGGTTCCCCAGCCGGGGCCAGACCCGG
1._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
2._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
3._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
4._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
5._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
6._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
7._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
8._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
9._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
10._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
11._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
12._RUQ_153
AAGGTTCCCCAGCC___AGACCCGG
13._RUQ_153
AAGGTTCCCCAGCC___AGACCCGG
14._LCT_EEN_37_/F
AAGGTTCC-AGCC___AGACCCGG
15._LCT_EEN_37_/F
AAGG_CCCCAGCC___AGACCCGG
16._GC-02-027-4-03
AAGGTTCCCCAGCCGGGGCGAGACCCGG
17._GC-02-027-4-03
AAGGTTCCCCAGCCGGGGCGAGACCCGG
18._GC-02-027-4-03
AAGGTTCCCCAGCCGGGGCGAGACCCGG
19._GC-02-027-4-03
AAGGTTCCCCAGCCGGGGCGAGACCCGG
20._GC-02-027-4-03
AAGGTTCCCCAGCCGGGGCGAGACCCGG
21._GC-08-160-4-03
AAGGTTCCCCAGCCGGGGCGAGACCCGG
22._GC-08-161-4-04
AAGGTTCCCCAGCCGGGGCGAGACCCGG
23._GC-08-161-4-04
AAGGTTCCCCAGCCGGGGCGAGACCCGG
24._GC-08-161-4-04
AAGGTTCCCCAGCCGGGGCGAGACCCGG
25._GC-08-161-4-04
AAGGTTCCCCAGCCGGGGCGAGACCCGG
26._GC-08-161-4-04
AAGGTTCCCCAGCCGGGGCGAGACCCGG
27._GC-02-027-4-03
AAGG_CCCCAGCCGGGGCGAGACCCGG
28._GC-08-160-4-03
ACGTCTACCCAACTAGGGCGAGACCTGT
29._GC-08-160-4-03
ACGTCTACCCAACTAGGGCGAGACCTGT
30._GC-08-160-4-03
ACGTCTACCCAACTAGGGCGAGACCTGT
31._GC-08-160-4-03
ACGTCTACCCAACTAGGGCGAGACCTGT
32._GC-02-027-4-03
CCGTTTCCCCAGCTAAGGCGGGACCTGT
33._GC-08-160-4-03
AATTTTAACCAGCCAGGGCCGGAA_GT
34._LCT_EEN_37_/F
ACGTCTACCCAACT___AGACCTGT
35._LCT_EEN_37_/F
ACGTCTACCCAACT___AGACCTGT
36._LCT_EEN_37_/F
CCGTTTCCCCAGCT___GGACCTGT
37._LCT_EEN_37_/F
ACGTCTACCCAACT___AGACCTGT
38._LCT_EEN_37_/F
ACGTCTACCCAACT___AGACCTGT
39._LCT_EEN_37_/F
AATTTTAACCAGCC___GGAA_GT
40._RUQ_153
AACCAACCGGAGGGGGGGCG_AC_CC
 1516171819202122232425262728
_Input profile
CGCCCCTTGGAAACCGCCTTAACCCCGG
1._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
2._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
3._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
4._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
5._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
6._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
7._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
8._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
9._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
10._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
11._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
12._RUQ_153
GGCC_TTGG__CG_TTAA_CC_
13._RUQ_153
GGCC_TTGG__CG_TTAA_CC_
14._LCT_EEN_37_/F
GGCC_TTGG__CGCCTTAA_CC_
15._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
16._GC-02-027-4-03
GGCCCCTTGGAAACCGCGTTAACCCCGG
17._GC-02-027-4-03
GGCCCCTTGGAAACCGCGTTAACCCCGG
18._GC-02-027-4-03
GGCCCCTTGGAAACCGCGTTAACCCCGG
19._GC-02-027-4-03
GGCCCCTTGGAAACCGCGTTAACCCCGG
20._GC-02-027-4-03
GGCCCCTTGGAAACCGCGTTAACCCCGG
21._GC-08-160-4-03
GGCCCCTTGGAAACCGCGTTAACCCCGG
22._GC-08-161-4-04
GGCCCCTTGGAAACCGCGTTAACCCCGG
23._GC-08-161-4-04
GGCCCCTTGGAAACCGCGTTAACCCCGG
24._GC-08-161-4-04
GGCCCCTTGGAAACCGCGTTAACCCCGG
25._GC-08-161-4-04
GGCCCCTTGGAAACCGCGTTAACCCCGG
26._GC-08-161-4-04
GGCCCCTTGGAAACCGCGTTAACCCCGG
27._GC-02-027-4-03
GGCCCCTTGGAAACCGCGTTAACCCCGG
28._GC-08-160-4-03
CCCCCTTTGGAGACCGCCCTAGCCCCGG
29._GC-08-160-4-03
CCCCCTTTGGAGACCGCCCTAGCCCCGG
30._GC-08-160-4-03
CCCCCTTTGGAGACCGCCCTAGCCCCGG
31._GC-08-160-4-03
CC_CTTTGGAGACCGCCCTAGCCCCGG
32._GC-02-027-4-03
CGCCCCCTGTAGACCGGGCTAGCCCCGG
33._GC-08-160-4-03
CGACCTCTGGAGAAGGCCCCAGCCCCGG
34._LCT_EEN_37_/F
CCCC_TTGG__CG_CTAG_CC_
35._LCT_EEN_37_/F
CCCC_TTGG__CG_CTAG_CC_
36._LCT_EEN_37_/F
CGCC_CTGT__CG_CTAG_CC_
37._LCT_EEN_37_/F
CCCC_TTGG__CG_CTAG_CC_
38._LCT_EEN_37_/F
CC__TTGG__CG_CTAG_CC_
39._LCT_EEN_37_/F
CGAC_CTGG__GG_CCAG_CC_
40._RUQ_153
CGCCGGAACCAAACCG_AAAA_GGCC
 2930313233343536      
_Input profile
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
1._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
2._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
3._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
4._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
5._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
6._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
7._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
8._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
9._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
10._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
11._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
12._RUQ_153
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
13._RUQ_153
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
14._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
15._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
16._GC-02-027-4-03
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
17._GC-02-027-4-03
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
18._GC-02-027-4-03
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
19._GC-02-027-4-03
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
20._GC-02-027-4-03
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
21._GC-08-160-4-03
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
22._GC-08-161-4-04
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
23._GC-08-161-4-04
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
24._GC-08-161-4-04
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
25._GC-08-161-4-04
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
26._GC-08-161-4-04
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
27._GC-02-027-4-03
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
28._GC-08-160-4-03
AGTTGTTTCTCTCGAAX_XX_XX_XX_XX_XX_X
29._GC-08-160-4-03
AGTTGTTTCTCTCGAAX_XX_XX_XX_XX_XX_X
30._GC-08-160-4-03
AGTTGTTTCTCTCGAAX_XX_XX_XX_XX_XX_X
31._GC-08-160-4-03
AGTTGTTTCTCTCGAAX_XX_XX_XX_XX_XX_X
32._GC-02-027-4-03
AGTTGT_CCCTCCAGX_XX_XX_XX_XX_XX_X
33._GC-08-160-4-03
AGTTTTTTCTCTCGAGX_XX_XX_XX_XX_XX_X
34._LCT_EEN_37_/F
__GT__CTCGAAX_XX_XX_XX_XX_XX_X
35._LCT_EEN_37_/F
__GT__CTCGAAX_XX_XX_XX_XX_XX_X
36._LCT_EEN_37_/F
__GT__CTCCAGX_XX_XX_XX_XX_XX_X
37._LCT_EEN_37_/F
__GT__CTCGAAX_XX_XX_XX_XX_XX_X
38._LCT_EEN_37_/F
__GT__CTCGAAX_XX_XX_XX_XX_XX_X
39._LCT_EEN_37_/F
__TT__CTCGAGX_XX_XX_XX_XX_XX_X
40._RUQ_153
AG_CCAAGGAGCGGGX_XX_XX_XX_XX_XX_X

Input profile: LCT_EEN_37_/F RUQ_153

 
 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._LCT_EEN_37_/F

97.8 %
23 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8403 4
 Dapeng Zhang, 2016

2._LCT_EEN_37_/F

97.8 %
23 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8404 11
 Dapeng Zhang, 2016

3._LCT_EEN_37_/F

97.8 %
23 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8404 10
 Dapeng Zhang, 2016

4._LCT_EEN_37_/F

97.8 %
23 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8404 9
 Dapeng Zhang, 2016

5._LCT_EEN_37_/F

97.8 %
23 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8404 5
 Dapeng Zhang, 2016

6._LCT_EEN_37_/F

97.8 %
23 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8404 2
 Dapeng Zhang, 2016

7._LCT_EEN_37_/F

97.8 %
23 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2403 9 > FP
 Dapeng Zhang, 2016

8._LCT_EEN_37_/F

97.8 %
23 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2403 2 > FP
 Dapeng Zhang, 2016

9._LCT_EEN_37_/F

97.8 %
23 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2403 14 > F
 Dapeng Zhang, 2016

10._LCT_EEN_37_/F

97.8 %
23 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2403 10 > F
 Dapeng Zhang, 2016

11._LCT_EEN_37_/F

97.8 %
23 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2403 12
 Dapeng Zhang, 2016

12._LCT_EEN_37_/F RUQ_153

97.8 %
23 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

13._LCT_EEN_37_/F RUQ_153

97.8 %
23 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._LCT_EEN_37_/F

97.8 %
23 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 133 T3
 Dapeng Zhang, 2014

15._LCT_EEN_37_/F

97.7 %
22 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2403 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

16._LCT_EEN_37_/F GC-02-027-4-03

95.8 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

17._LCT_EEN_37_/F GC-02-027-4-03

95.8 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

18._LCT_EEN_37_/F GC-02-027-4-03

95.8 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

19._LCT_EEN_37_/F GC-02-027-4-03

95.8 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

20._LCT_EEN_37_/F GC-02-027-4-03

95.8 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

21._LCT_EEN_37_/F GC-08-160-4-03

95.8 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

22._LCT_EEN_37_/F GC-08-161-4-04

95.8 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._LCT_EEN_37_/F GC-08-161-4-04

95.8 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

24._LCT_EEN_37_/F GC-08-161-4-04

95.8 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

25._LCT_EEN_37_/F GC-08-161-4-04

95.8 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

26._LCT_EEN_37_/F GC-08-161-4-04

95.8 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

27._LCT_EEN_37_/F GC-02-027-4-03

95.7 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

28._LCT_EEN_37_/F GC-08-160-4-03

73.6 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

29._LCT_EEN_37_/F GC-08-160-4-03

73.6 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

30._LCT_EEN_37_/F GC-08-160-4-03

73.6 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

31._LCT_EEN_37_/F GC-08-160-4-03

72.9 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

32._LCT_EEN_37_/F GC-02-027-4-03

71.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

33._LCT_EEN_37_/F GC-08-160-4-03

70 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

34._LCT_EEN_37_/F

69.6 %
23 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8403 7
 Dapeng Zhang, 2016

35._LCT_EEN_37_/F

69.6 %
23 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8403 2
 Dapeng Zhang, 2016

36._LCT_EEN_37_/F

69.6 %
23 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2403 3
 Dapeng Zhang, 2016

37._LCT_EEN_37_/F

69.6 %
23 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8403 5
 Dapeng Zhang, 2016

38._LCT_EEN_37_/F

68.2 %
22 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8403 1
 Dapeng Zhang, 2016

39._LCT_EEN_37_/F

63.6 %
22 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8403 3
 Dapeng Zhang, 2016

40._LCT_EEN_37_/F RUQ_153

50 %
31 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP144 2TcSNP150 3TcSNP151 4TcSNP193 5TcSNP226
6TcSNP230 7TcSNP242 8TcSNP329 9TcSNP364 10TcSNP448
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP602 18TcSNP619 19TcSNP723 20TcSNP731
21TcSNP823 22TcSNP872 23TcSNP878 24TcSNP891 25TcSNP998
26TcSNP999 27TcSNP1060 28TcSNP1063 29TcSNP1111 30TcSNP1126
31TcSNP1253 32TcSNP1309 33TcSNP1439 34TcSNP1442 35TcSNP1458
36TcSNP1484