SNP Profiles of LCT EEN 73/D   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAGGTTCCCCAGCCGGGGCCAGACCCGG
1._LCT_EEN_37_/F___
AAGGTTCCCCAGCC______AGACCCGG
2._LCT_EEN_37_/F___
AAGGTTCCCCAGCC______AGACCCGG
3._LCT_EEN_37_/F___
AAGGTTCCCCAGCC______AGACCCGG
4._LCT_EEN_37_/F___
AAGGTTCCCCAGCC______AGACCCGG
5._LCT_EEN_37_/F___
AAGGTTCCCCAGCC______AGACCCGG
6._LCT_EEN_37_/F___
AAGGTTCCCCAGCC______AGACCCGG
7._LCT_EEN_37_/F___
AAGGTTCCCCAGCC______AGACCCGG
8._LCT_EEN_37_/F___
AAGGTTCCCCAGCC______AGACCCGG
9._LCT_EEN_37_/F___
AAGGTTCCCCAGCC______AGACCCGG
10._LCT_EEN_37_/F___
AAGGTTCCCCAGCC______AGACCCGG
11._LCT_EEN_37_/F___
AAGGTTCCCCAGCC______AGACCCGG
12._LCT_EEN_37_/F___
AAGGTTCCCCAGCC______AGACCCGG
13._LCT_EEN_37_/F___
AAGGTTCCCCAGCC______AGACCCGG
14._LCT_EEN_37_/F___
AAGGTTCC__AGCC______AGACCCGG
15._LCT_EEN_37_/F___
AAGG__CCCCAGCC______AGACCCGG
16._LCT_EEN_37_/F___
AAGGTTCCCCAGCCGGGGCGAGACCCGG
17._LCT_EEN_37_/F___
AAGGTTCCCCAGCCGGGGCGAGACCCGG
18._LCT_EEN_37_/F___
AAGGTTCCCCAGCCGGGGCGAGACCCGG
19._LCT_EEN_37_/F___
AAGGTTCCCCAGCCGGGGCGAGACCCGG
20._LCT_EEN_37_/F___
AAGGTTCCCCAGCCGGGGCGAGACCCGG
21._LCT_EEN_37_/F___
AAGGTTCCCCAGCCGGGGCGAGACCCGG
22._LCT_EEN_37_/F___
AAGGTTCCCCAGCCGGGGCGAGACCCGG
23._LCT_EEN_37_/F___
AAGGTTCCCCAGCCGGGGCGAGACCCGG
24._LCT_EEN_37_/F___
AAGGTTCCCCAGCCGGGGCGAGACCCGG
25._LCT_EEN_37_/F___
AAGGTTCCCCAGCCGGGGCGAGACCCGG
26._LCT_EEN_37_/F___
AAGGTTCCCCAGCCGGGGCGAGACCCGG
27._LCT_EEN_37_/F___
AAGG__CCCCAGCCGGGGCGAGACCCGG
28._LCT_EEN_37_/F___
ACGTCTACCCAACTAGGGCGAGACCTGT
29._LCT_EEN_37_/F___
ACGTCTACCCAACTAGGGCGAGACCTGT
30._LCT_EEN_37_/F___
ACGTCTACCCAACTAGGGCGAGACCTGT
31._LCT_EEN_37_/F___
ACGTCTACCCAACTAGGGCGAGACCTGT
32._LCT_EEN_37_/F___
CCGTTTCCCCAGCTAAGGCGGGACCTGT
33._LCT_EEN_37_/F___
AATTTTAACCAGCCAGGGCCGGAA__GT
34._LCT_EEN_37_/F___
ACGTCTACCCAACT______AGACCTGT
35._LCT_EEN_37_/F___
ACGTCTACCCAACT______AGACCTGT
36._LCT_EEN_37_/F___
CCGTTTCCCCAGCT______GGACCTGT
37._LCT_EEN_37_/F___
ACGTCTACCCAACT______AGACCTGT
38._LCT_EEN_37_/F___
ACGTCTACCCAACT______AGACCTGT
39._LCT_EEN_37_/F___
AATTTTAACCAGCC______GGAA__GT
40._LCT_EEN_37_/F___
AACCAACCGGAGGGGGGGCG__AC__CC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CGCCCCTTGGAAACCGCCTTAACCCCGG
1._LCT_EEN_37_/F___
GGCC__TTGG____CG__TTAA__CC__
2._LCT_EEN_37_/F___
GGCC__TTGG____CG__TTAA__CC__
3._LCT_EEN_37_/F___
GGCC__TTGG____CG__TTAA__CC__
4._LCT_EEN_37_/F___
GGCC__TTGG____CG__TTAA__CC__
5._LCT_EEN_37_/F___
GGCC__TTGG____CG__TTAA__CC__
6._LCT_EEN_37_/F___
GGCC__TTGG____CG__TTAA__CC__
7._LCT_EEN_37_/F___
GGCC__TTGG____CG__TTAA__CC__
8._LCT_EEN_37_/F___
GGCC__TTGG____CG__TTAA__CC__
9._LCT_EEN_37_/F___
GGCC__TTGG____CG__TTAA__CC__
10._LCT_EEN_37_/F___
GGCC__TTGG____CG__TTAA__CC__
11._LCT_EEN_37_/F___
GGCC__TTGG____CG__TTAA__CC__
12._LCT_EEN_37_/F___
GGCC__TTGG____CG__TTAA__CC__
13._LCT_EEN_37_/F___
GGCC__TTGG____CG__TTAA__CC__
14._LCT_EEN_37_/F___
GGCC__TTGG____CGCCTTAA__CC__
15._LCT_EEN_37_/F___
GGCC__TTGG____CG__TTAA__CC__
16._LCT_EEN_37_/F___
GGCCCCTTGGAAACCGCGTTAACCCCGG
17._LCT_EEN_37_/F___
GGCCCCTTGGAAACCGCGTTAACCCCGG
18._LCT_EEN_37_/F___
GGCCCCTTGGAAACCGCGTTAACCCCGG
19._LCT_EEN_37_/F___
GGCCCCTTGGAAACCGCGTTAACCCCGG
20._LCT_EEN_37_/F___
GGCCCCTTGGAAACCGCGTTAACCCCGG
21._LCT_EEN_37_/F___
GGCCCCTTGGAAACCGCGTTAACCCCGG
22._LCT_EEN_37_/F___
GGCCCCTTGGAAACCGCGTTAACCCCGG
23._LCT_EEN_37_/F___
GGCCCCTTGGAAACCGCGTTAACCCCGG
24._LCT_EEN_37_/F___
GGCCCCTTGGAAACCGCGTTAACCCCGG
25._LCT_EEN_37_/F___
GGCCCCTTGGAAACCGCGTTAACCCCGG
26._LCT_EEN_37_/F___
GGCCCCTTGGAAACCGCGTTAACCCCGG
27._LCT_EEN_37_/F___
GGCCCCTTGGAAACCGCGTTAACCCCGG
28._LCT_EEN_37_/F___
CCCCCTTTGGAGACCGCCCTAGCCCCGG
29._LCT_EEN_37_/F___
CCCCCTTTGGAGACCGCCCTAGCCCCGG
30._LCT_EEN_37_/F___
CCCCCTTTGGAGACCGCCCTAGCCCCGG
31._LCT_EEN_37_/F___
CC__CTTTGGAGACCGCCCTAGCCCCGG
32._LCT_EEN_37_/F___
CGCCCCCTGTAGACCGGGCTAGCCCCGG
33._LCT_EEN_37_/F___
CGACCTCTGGAGAAGGCCCCAGCCCCGG
34._LCT_EEN_37_/F___
CCCC__TTGG____CG__CTAG__CC__
35._LCT_EEN_37_/F___
CCCC__TTGG____CG__CTAG__CC__
36._LCT_EEN_37_/F___
CGCC__CTGT____CG__CTAG__CC__
37._LCT_EEN_37_/F___
CCCC__TTGG____CG__CTAG__CC__
38._LCT_EEN_37_/F___
CC____TTGG____CG__CTAG__CC__
39._LCT_EEN_37_/F___
CGAC__CTGG____GG__CCAG__CC__
40._LCT_EEN_37_/F___
CGCCGGAACCAAACCG__AAAA__GGCC
 29 30 31 32 33 34 35 36       
_Input profile
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
1._LCT_EEN_37_/F___
____GG____CTCGGGX_XX_XX_XX_XX_XX_X
2._LCT_EEN_37_/F___
____GG____CTCGGGX_XX_XX_XX_XX_XX_X
3._LCT_EEN_37_/F___
____GG____CTCGGGX_XX_XX_XX_XX_XX_X
4._LCT_EEN_37_/F___
____GG____CTCGGGX_XX_XX_XX_XX_XX_X
5._LCT_EEN_37_/F___
____GG____CTCGGGX_XX_XX_XX_XX_XX_X
6._LCT_EEN_37_/F___
____GG____CTCGGGX_XX_XX_XX_XX_XX_X
7._LCT_EEN_37_/F___
____GG____CTCGGGX_XX_XX_XX_XX_XX_X
8._LCT_EEN_37_/F___
____GG____CTCGGGX_XX_XX_XX_XX_XX_X
9._LCT_EEN_37_/F___
____GG____CTCGGGX_XX_XX_XX_XX_XX_X
10._LCT_EEN_37_/F___
____GG____CTCGGGX_XX_XX_XX_XX_XX_X
11._LCT_EEN_37_/F___
____GG____CTCGGGX_XX_XX_XX_XX_XX_X
12._LCT_EEN_37_/F___
____GG____CTCGGGX_XX_XX_XX_XX_XX_X
13._LCT_EEN_37_/F___
____GG____CTCGGGX_XX_XX_XX_XX_XX_X
14._LCT_EEN_37_/F___
____GG____CTCGGGX_XX_XX_XX_XX_XX_X
15._LCT_EEN_37_/F___
____GG____CTCGGGX_XX_XX_XX_XX_XX_X
16._LCT_EEN_37_/F___
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
17._LCT_EEN_37_/F___
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
18._LCT_EEN_37_/F___
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
19._LCT_EEN_37_/F___
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
20._LCT_EEN_37_/F___
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
21._LCT_EEN_37_/F___
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
22._LCT_EEN_37_/F___
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
23._LCT_EEN_37_/F___
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
24._LCT_EEN_37_/F___
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
25._LCT_EEN_37_/F___
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
26._LCT_EEN_37_/F___
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
27._LCT_EEN_37_/F___
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
28._LCT_EEN_37_/F___
AGTTGTTTCTCTCGAAX_XX_XX_XX_XX_XX_X
29._LCT_EEN_37_/F___
AGTTGTTTCTCTCGAAX_XX_XX_XX_XX_XX_X
30._LCT_EEN_37_/F___
AGTTGTTTCTCTCGAAX_XX_XX_XX_XX_XX_X
31._LCT_EEN_37_/F___
AGTTGTTTCTCTCGAAX_XX_XX_XX_XX_XX_X
32._LCT_EEN_37_/F___
AGTTGT__CCCTCCAGX_XX_XX_XX_XX_XX_X
33._LCT_EEN_37_/F___
AGTTTTTTCTCTCGAGX_XX_XX_XX_XX_XX_X
34._LCT_EEN_37_/F___
____GT____CTCGAAX_XX_XX_XX_XX_XX_X
35._LCT_EEN_37_/F___
____GT____CTCGAAX_XX_XX_XX_XX_XX_X
36._LCT_EEN_37_/F___
____GT____CTCCAGX_XX_XX_XX_XX_XX_X
37._LCT_EEN_37_/F___
____GT____CTCGAAX_XX_XX_XX_XX_XX_X
38._LCT_EEN_37_/F___
____GT____CTCGAAX_XX_XX_XX_XX_XX_X
39._LCT_EEN_37_/F___
____TT____CTCGAGX_XX_XX_XX_XX_XX_X
40._LCT_EEN_37_/F___
AG__CCAAGGAGCGGGX_XX_XX_XX_XX_XX_X

Input profile: LCT_EEN_37_/F RUQ_153

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 4
 Dapeng Zhang, 2016

2._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 11
 Dapeng Zhang, 2016

3._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 10
 Dapeng Zhang, 2016

4._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 9
 Dapeng Zhang, 2016

5._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 5
 Dapeng Zhang, 2016

6._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 2
 Dapeng Zhang, 2016

7._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 9 > FP
 Dapeng Zhang, 2016

8._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 2 > FP
 Dapeng Zhang, 2016

9._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 14 > F
 Dapeng Zhang, 2016

10._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 10 > F
 Dapeng Zhang, 2016

11._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 12
 Dapeng Zhang, 2016

12._LCT_EEN_37_/F RUQ_153

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

13._LCT_EEN_37_/F RUQ_153

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._LCT_EEN_37_/F

97.8 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 133 T3
 Dapeng Zhang, 2014

15._LCT_EEN_37_/F

97.7 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 4
 Dapeng Zhang, 2016

16._LCT_EEN_37_/F GC-02-027-4-03

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

17._LCT_EEN_37_/F GC-02-027-4-03

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

18._LCT_EEN_37_/F GC-02-027-4-03

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

19._LCT_EEN_37_/F GC-02-027-4-03

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

20._LCT_EEN_37_/F GC-02-027-4-03

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

21._LCT_EEN_37_/F GC-08-160-4-03

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

22._LCT_EEN_37_/F GC-08-161-4-04

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._LCT_EEN_37_/F GC-08-161-4-04

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

24._LCT_EEN_37_/F GC-08-161-4-04

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

25._LCT_EEN_37_/F GC-08-161-4-04

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

26._LCT_EEN_37_/F GC-08-161-4-04

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

27._LCT_EEN_37_/F GC-02-027-4-03

95.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

28._LCT_EEN_37_/F GC-08-160-4-03

73.6 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

29._LCT_EEN_37_/F GC-08-160-4-03

73.6 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

30._LCT_EEN_37_/F GC-08-160-4-03

73.6 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

31._LCT_EEN_37_/F GC-08-160-4-03

72.9 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

32._LCT_EEN_37_/F GC-02-027-4-03

71.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

33._LCT_EEN_37_/F GC-08-160-4-03

70 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

34._LCT_EEN_37_/F

69.6 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 7
 Dapeng Zhang, 2016

35._LCT_EEN_37_/F

69.6 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 2
 Dapeng Zhang, 2016

36._LCT_EEN_37_/F

69.6 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 3
 Dapeng Zhang, 2016

37._LCT_EEN_37_/F

69.6 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 5
 Dapeng Zhang, 2016

38._LCT_EEN_37_/F

68.2 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 1
 Dapeng Zhang, 2016

39._LCT_EEN_37_/F

63.6 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 3
 Dapeng Zhang, 2016

40._LCT_EEN_37_/F RUQ_153

50 %
31 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP144 2TcSNP150 3TcSNP151 4TcSNP193 5TcSNP226
6TcSNP230 7TcSNP242 8TcSNP329 9TcSNP364 10TcSNP448
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP602 18TcSNP619 19TcSNP723 20TcSNP731
21TcSNP823 22TcSNP872 23TcSNP878 24TcSNP891 25TcSNP998
26TcSNP999 27TcSNP1060 28TcSNP1063 29TcSNP1111 30TcSNP1126
31TcSNP1253 32TcSNP1309 33TcSNP1439 34TcSNP1442 35TcSNP1458
36TcSNP1484