SNP Profiles of LP 1/41 [POU] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	GG	CT	GG	CC	CC	AA	CC	GG	GG	TT	CC
1._RUQ_353	__	__	CC	GG	CT	__	CC	CC	AA	CC	__	__	TT	__
2._LP_1_/41_[POU]	__	__	CC	GG	CT	__	CC	__	AA	CC	__	__	TT	__
3._RUQ_353	__	__	CC	__	__	__	__	__	AA	__	GG	__	__	__
4._GC-05-148-4-01	TT	CC	CC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CG
5._GC-05-148-4-01	TT	CC	CC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CG
6._GC-05-148-4-01	TT	CC	CC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CG
7._GC-05-148-4-01	TT	CC	CC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CG
8._GC-05-148-4-01	TT	CC	CC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CG
9._GC-05-055-2-06	TT	CC	CC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CG
10._GC-05-055-2-06	TT	CC	CC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CG
11._GC-05-055-2-06	TT	CC	CC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CG
12._GC-05-055-2-06	TT	CC	CC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CG
13._GC-05-055-2-06	TT	CC	CC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CG
14._LP_1_/41_[POU]	__	__	CC	GT	CT	__	AA	CG	AG	TT	__	__	AA	__
15._LP_1_/41_[POU]	__	__	CC	GT	CT	__	AA	CG	AG	TT	__	__	AA	__
16._LP_1_/41_[POU]	__	__	CC	GT	CT	__	AA	CG	AG	TT	__	__	AA	__
17._LP_1_/41_[POU]	__	__	CC	GT	CT	__	AA	CG	AG	TT	__	__	AA	__
18._LP_1_/41_[POU]	__	__	CC	GT	CT	__	AA	CG	AG	TT	__	__	AA	__
19._LP_1_/41_[POU]	__	__	CC	GT	CT	__	AA	CG	AG	TT	__	__	AA	__
20._LP_1_/41_[POU]	__	__	CC	GT	CT	__	AA	CG	AG	TT	__	__	AA	__
21._LP_1_/41_[POU]	__	__	CC	GT	CT	__	AA	CG	AG	TT	__	__	AA	__
22._LP_1_/41_[POU]	__	__	CC	GT	CT	__	AA	CG	AG	TT	__	__	AA	__
23._LP_1_/41_[POU]	__	__	CC	GT	CT	__	AA	CG	AG	TT	__	__	AA	__
24._RUQ_353	AA	CC	CC	CC	AG	GG	CC	GG	AA	GG	GG	GG	TT	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CC	GG	GG	CC	TT	CT	TT	GG	AG	GG	CC	GG	CG
1._RUQ_353	GG	CC	GG	GG	CC	__	CT	__	GG	__	__	__	GG	__
2._LP_1_/41_[POU]	GG	CC	GG	GG	CC	__	CT	__	GG	__	__	__	GG	__
3._RUQ_353	__	CC	__	GG	CC	TT	__	TT	GG	AG	__	CC	GG	__
4._GC-05-148-4-01	AG	AC	GT	GG	AC	CT	CC	CT	GG	AG	TT	AC	GG	__
5._GC-05-148-4-01	AG	AC	GT	GG	AC	CT	CC	CT	GG	AG	TT	AC	GG	CC
6._GC-05-148-4-01	AG	AC	GT	GG	AC	CT	CC	CT	GG	AG	TT	AC	GG	CC
7._GC-05-148-4-01	AG	AC	GT	GG	AC	CT	CC	CT	GG	AG	TT	AC	GG	CC
8._GC-05-148-4-01	AG	AC	GT	GG	AC	CT	CC	CT	GG	AG	TT	AC	GG	CC
9._GC-05-055-2-06	AG	AC	GT	GG	AC	CT	CC	CT	GG	AG	TT	AC	GG	CC
10._GC-05-055-2-06	AG	AC	GT	GG	AC	CT	CC	CT	GG	AG	TT	AC	GG	CC
11._GC-05-055-2-06	AG	AC	GT	GG	AC	CT	CC	CT	GG	AG	TT	AC	GG	CC
12._GC-05-055-2-06	AG	AC	GT	GG	AC	CT	CC	CT	GG	AG	TT	AC	GG	CC
13._GC-05-055-2-06	AG	AC	GT	GG	AC	CT	CC	CT	GG	AG	TT	AC	GG	CC
14._LP_1_/41_[POU]	AG	AC	GT	GG	AC	__	CC	__	GG	__	__	__	GG	__
15._LP_1_/41_[POU]	AG	AC	GT	GG	AC	__	CC	__	GG	__	__	__	GG	__
16._LP_1_/41_[POU]	AG	AC	GT	GG	AC	__	CC	__	GG	__	__	__	GG	__
17._LP_1_/41_[POU]	AG	AC	GT	GG	AC	__	CC	__	GG	__	__	__	GG	__
18._LP_1_/41_[POU]	AG	AC	GT	GG	AC	__	CC	__	GG	__	__	__	GG	__
19._LP_1_/41_[POU]	AG	AC	GT	GG	AC	__	CC	__	GG	__	__	__	GG	__
20._LP_1_/41_[POU]	AG	AC	GT	GG	AC	__	CC	__	GG	__	__	__	GG	__
21._LP_1_/41_[POU]	AG	AC	GT	GG	AC	__	CC	__	GG	__	__	__	GG	__
22._LP_1_/41_[POU]	AG	AC	GT	GG	AC	__	CC	__	GG	__	__	__	GG	__
23._LP_1_/41_[POU]	AG	AC	GT	GG	AC	__	CC	__	GG	__	__	__	GG	__
24._RUQ_353	__	CC	CC	GG	CC	AA	AG	__	CC	AG	CC	CC	CC	__

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	TT	AA	CC	CC	GT	GG	TT	TT	CC	CT	CT	CG	AG	X_X
1._RUQ_353	TT	AA	__	CC	__	__	__	TT	__	__	CT	CG	AG	X_X
2._LP_1_/41_[POU]	TT	AA	__	CC	__	__	__	TT	__	__	CT	CG	AG	X_X
3._RUQ_353	__	AA	CC	__	__	__	__	TT	__	__	__	CG	__	X_X
4._GC-05-148-4-01	CT	AA	CC	CT	GG	AG	TT	GT	TT	CT	CC	CG	AA	X_X
5._GC-05-148-4-01	CT	AA	CC	CT	GG	AG	TT	GT	TT	CT	CC	CG	AA	X_X
6._GC-05-148-4-01	CT	AA	CC	CT	GG	AG	TT	GT	TT	CT	CC	CG	AA	X_X
7._GC-05-148-4-01	CT	AA	CC	CT	GG	AG	TT	GT	TT	CT	CC	CG	AA	X_X
8._GC-05-148-4-01	CT	AA	CC	CT	GG	AG	TT	GT	TT	CT	CC	CG	AA	X_X
9._GC-05-055-2-06	CT	AA	CC	CT	GG	AG	TT	GT	TT	CT	CC	CG	AA	X_X
10._GC-05-055-2-06	CT	AA	CC	CT	GG	AG	TT	GT	TT	CT	CC	CG	AA	X_X
11._GC-05-055-2-06	CT	AA	CC	CT	GG	AG	TT	GT	TT	CT	CC	CG	AA	X_X
12._GC-05-055-2-06	CT	AA	CC	CT	GG	AG	TT	GT	TT	CT	CC	CG	AA	X_X
13._GC-05-055-2-06	CT	AA	CC	CT	GG	AG	TT	GT	TT	CT	CC	CG	AA	X_X
14._LP_1_/41_[POU]	CT	AA	__	CT	__	__	__	GT	__	__	CC	CG	AA	X_X
15._LP_1_/41_[POU]	CT	AA	__	CT	__	__	__	GT	__	__	CC	CG	AA	X_X
16._LP_1_/41_[POU]	CT	AA	__	CT	__	__	__	GT	__	__	CC	CG	AA	X_X
17._LP_1_/41_[POU]	CT	AA	__	CT	__	__	__	GT	__	__	CC	CG	AA	X_X
18._LP_1_/41_[POU]	CT	AA	__	CT	__	__	__	GT	__	__	CC	CG	AA	X_X
19._LP_1_/41_[POU]	CT	AA	__	CT	__	__	__	GT	__	__	CC	CG	AA	X_X
20._LP_1_/41_[POU]	CT	AA	__	CT	__	__	__	GT	__	__	CC	CG	AA	X_X
21._LP_1_/41_[POU]	CT	AA	__	CT	__	__	__	GT	__	__	CC	CG	AA	X_X
22._LP_1_/41_[POU]	CT	AA	__	CT	__	__	__	GT	__	__	CC	CG	AA	X_X
23._LP_1_/41_[POU]	CT	AA	__	CT	__	__	__	GT	__	__	CC	CG	AA	X_X
24._RUQ_353	AA	AA	__	GG	AC	GG	__	AA	GG	AG	AG	CG	AG	X_X

Input profile: LP_1_/41_[POU] RUQ_353

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._LP_1_/41_[POU] RUQ_353

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._LP_1_/41_[POU]

identical
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C796

Dapeng Zhang, 2016

3._LP_1_/41_[POU] RUQ_353

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.170 Cri
0.126 Nac
0.655

4._LP_1_/41_[POU] GC-05-148-4-01

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

5._LP_1_/41_[POU] GC-05-148-4-01

62.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

6._LP_1_/41_[POU] GC-05-148-4-01

62.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

7._LP_1_/41_[POU] GC-05-148-4-01

62.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

8._LP_1_/41_[POU] GC-05-148-4-01

62.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP3

9._LP_1_/41_[POU] GC-05-055-2-06

62.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

10._LP_1_/41_[POU] GC-05-055-2-06

62.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

11._LP_1_/41_[POU] GC-05-055-2-06

62.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

12._LP_1_/41_[POU] GC-05-055-2-06

62.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

13._LP_1_/41_[POU] GC-05-055-2-06

62.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

14._LP_1_/41_[POU]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5401 2 > FP

Dapeng Zhang, 2016

15._LP_1_/41_[POU]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5206 2

Dapeng Zhang, 2016

16._LP_1_/41_[POU]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5206 4

Dapeng Zhang, 2016

17._LP_1_/41_[POU]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5206 5

Dapeng Zhang, 2016

18._LP_1_/41_[POU]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5206 1 > FP

Dapeng Zhang, 2016

19._LP_1_/41_[POU]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5206 3 > FP

Dapeng Zhang, 2016

20._LP_1_/41_[POU]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5401 3

Dapeng Zhang, 2016

21._LP_1_/41_[POU]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5401 4

Dapeng Zhang, 2016

22._LP_1_/41_[POU]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5401 5

Dapeng Zhang, 2016

23._LP_1_/41_[POU]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5401 1 > FP

Dapeng Zhang, 2016

24._LP_1_/41_[POU] RUQ_353

47.2 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP560	18	TcSNP577	19	TcSNP591	20	TcSNP602
21	TcSNP619	22	TcSNP702	23	TcSNP723	24	TcSNP731	25	TcSNP799
26	TcSNP823	27	TcSNP872	28	TcSNP878	29	TcSNP891	30	TcSNP998
31	TcSNP999	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484