SNP Profiles of LP 1 /41 [POU] View Data

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_Input profile	TT	CC	CC	GG	CT	GG	CC	CC	AA	CC	GG	GG	TT	CC
1._LP_1_/41_[POU]___	__	__	CC	GG	CT	__	CC	CC	AA	CC	__	__	TT	__
2._LP_1_/41_[POU]___	__	__	CC	GG	CT	__	CC	__	AA	CC	__	__	TT	__
3._LP_1_/41_[POU]___	__	__	CC	__	__	__	__	__	AA	__	GG	__	__	__
4._LP_1_/41_[POU]___	TT	CC	CC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CG
5._LP_1_/41_[POU]___	TT	CC	CC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CG
6._LP_1_/41_[POU]___	TT	CC	CC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CG
7._LP_1_/41_[POU]___	TT	CC	CC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CG
8._LP_1_/41_[POU]___	TT	CC	CC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CG
9._LP_1_/41_[POU]___	TT	CC	CC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CG
10._LP_1_/41_[POU]___	TT	CC	CC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CG
11._LP_1_/41_[POU]___	TT	CC	CC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CG
12._LP_1_/41_[POU]___	TT	CC	CC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CG
13._LP_1_/41_[POU]___	TT	CC	CC	GT	CT	GG	AA	CG	AG	TT	AG	GG	AA	CG
14._LP_1_/41_[POU]___	__	__	CC	GT	CT	__	AA	CG	AG	TT	__	__	AA	__
15._LP_1_/41_[POU]___	__	__	CC	GT	CT	__	AA	CG	AG	TT	__	__	AA	__
16._LP_1_/41_[POU]___	__	__	CC	GT	CT	__	AA	CG	AG	TT	__	__	AA	__
17._LP_1_/41_[POU]___	__	__	CC	GT	CT	__	AA	CG	AG	TT	__	__	AA	__
18._LP_1_/41_[POU]___	__	__	CC	GT	CT	__	AA	CG	AG	TT	__	__	AA	__
19._LP_1_/41_[POU]___	__	__	CC	GT	CT	__	AA	CG	AG	TT	__	__	AA	__
20._LP_1_/41_[POU]___	__	__	CC	GT	CT	__	AA	CG	AG	TT	__	__	AA	__
21._LP_1_/41_[POU]___	__	__	CC	GT	CT	__	AA	CG	AG	TT	__	__	AA	__
22._LP_1_/41_[POU]___	__	__	CC	GT	CT	__	AA	CG	AG	TT	__	__	AA	__
23._LP_1_/41_[POU]___	__	__	CC	GT	CT	__	AA	CG	AG	TT	__	__	AA	__
24._LP_1_/41_[POU]___	AA	CC	CC	CC	AG	GG	CC	GG	AA	GG	GG	GG	TT	GG

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_Input profile	GG	CC	GG	GG	CC	TT	CT	TT	GG	AG	GG	CC	GG	CG
1._LP_1_/41_[POU]___	GG	CC	GG	GG	CC	__	CT	__	GG	__	__	__	GG	__
2._LP_1_/41_[POU]___	GG	CC	GG	GG	CC	__	CT	__	GG	__	__	__	GG	__
3._LP_1_/41_[POU]___	__	CC	__	GG	CC	TT	__	TT	GG	AG	__	CC	GG	__
4._LP_1_/41_[POU]___	AG	AC	GT	GG	AC	CT	CC	CT	GG	AG	TT	AC	GG	__
5._LP_1_/41_[POU]___	AG	AC	GT	GG	AC	CT	CC	CT	GG	AG	TT	AC	GG	CC
6._LP_1_/41_[POU]___	AG	AC	GT	GG	AC	CT	CC	CT	GG	AG	TT	AC	GG	CC
7._LP_1_/41_[POU]___	AG	AC	GT	GG	AC	CT	CC	CT	GG	AG	TT	AC	GG	CC
8._LP_1_/41_[POU]___	AG	AC	GT	GG	AC	CT	CC	CT	GG	AG	TT	AC	GG	CC
9._LP_1_/41_[POU]___	AG	AC	GT	GG	AC	CT	CC	CT	GG	AG	TT	AC	GG	CC
10._LP_1_/41_[POU]___	AG	AC	GT	GG	AC	CT	CC	CT	GG	AG	TT	AC	GG	CC
11._LP_1_/41_[POU]___	AG	AC	GT	GG	AC	CT	CC	CT	GG	AG	TT	AC	GG	CC
12._LP_1_/41_[POU]___	AG	AC	GT	GG	AC	CT	CC	CT	GG	AG	TT	AC	GG	CC
13._LP_1_/41_[POU]___	AG	AC	GT	GG	AC	CT	CC	CT	GG	AG	TT	AC	GG	CC
14._LP_1_/41_[POU]___	AG	AC	GT	GG	AC	__	CC	__	GG	__	__	__	GG	__
15._LP_1_/41_[POU]___	AG	AC	GT	GG	AC	__	CC	__	GG	__	__	__	GG	__
16._LP_1_/41_[POU]___	AG	AC	GT	GG	AC	__	CC	__	GG	__	__	__	GG	__
17._LP_1_/41_[POU]___	AG	AC	GT	GG	AC	__	CC	__	GG	__	__	__	GG	__
18._LP_1_/41_[POU]___	AG	AC	GT	GG	AC	__	CC	__	GG	__	__	__	GG	__
19._LP_1_/41_[POU]___	AG	AC	GT	GG	AC	__	CC	__	GG	__	__	__	GG	__
20._LP_1_/41_[POU]___	AG	AC	GT	GG	AC	__	CC	__	GG	__	__	__	GG	__
21._LP_1_/41_[POU]___	AG	AC	GT	GG	AC	__	CC	__	GG	__	__	__	GG	__
22._LP_1_/41_[POU]___	AG	AC	GT	GG	AC	__	CC	__	GG	__	__	__	GG	__
23._LP_1_/41_[POU]___	AG	AC	GT	GG	AC	__	CC	__	GG	__	__	__	GG	__
24._LP_1_/41_[POU]___	__	CC	CC	GG	CC	AA	AG	__	CC	AG	CC	CC	CC	__

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_Input profile	TT	AA	CC	CC	GT	GG	TT	TT	CC	CT	CT	CG	AG	X_X
1._LP_1_/41_[POU]___	TT	AA	__	CC	__	__	__	TT	__	__	CT	CG	AG	X_X
2._LP_1_/41_[POU]___	TT	AA	__	CC	__	__	__	TT	__	__	CT	CG	AG	X_X
3._LP_1_/41_[POU]___	__	AA	CC	__	__	__	__	TT	__	__	__	CG	__	X_X
4._LP_1_/41_[POU]___	CT	AA	CC	CT	GG	AG	TT	GT	TT	CT	CC	CG	AA	X_X
5._LP_1_/41_[POU]___	CT	AA	CC	CT	GG	AG	TT	GT	TT	CT	CC	CG	AA	X_X
6._LP_1_/41_[POU]___	CT	AA	CC	CT	GG	AG	TT	GT	TT	CT	CC	CG	AA	X_X
7._LP_1_/41_[POU]___	CT	AA	CC	CT	GG	AG	TT	GT	TT	CT	CC	CG	AA	X_X
8._LP_1_/41_[POU]___	CT	AA	CC	CT	GG	AG	TT	GT	TT	CT	CC	CG	AA	X_X
9._LP_1_/41_[POU]___	CT	AA	CC	CT	GG	AG	TT	GT	TT	CT	CC	CG	AA	X_X
10._LP_1_/41_[POU]___	CT	AA	CC	CT	GG	AG	TT	GT	TT	CT	CC	CG	AA	X_X
11._LP_1_/41_[POU]___	CT	AA	CC	CT	GG	AG	TT	GT	TT	CT	CC	CG	AA	X_X
12._LP_1_/41_[POU]___	CT	AA	CC	CT	GG	AG	TT	GT	TT	CT	CC	CG	AA	X_X
13._LP_1_/41_[POU]___	CT	AA	CC	CT	GG	AG	TT	GT	TT	CT	CC	CG	AA	X_X
14._LP_1_/41_[POU]___	CT	AA	__	CT	__	__	__	GT	__	__	CC	CG	AA	X_X
15._LP_1_/41_[POU]___	CT	AA	__	CT	__	__	__	GT	__	__	CC	CG	AA	X_X
16._LP_1_/41_[POU]___	CT	AA	__	CT	__	__	__	GT	__	__	CC	CG	AA	X_X
17._LP_1_/41_[POU]___	CT	AA	__	CT	__	__	__	GT	__	__	CC	CG	AA	X_X
18._LP_1_/41_[POU]___	CT	AA	__	CT	__	__	__	GT	__	__	CC	CG	AA	X_X
19._LP_1_/41_[POU]___	CT	AA	__	CT	__	__	__	GT	__	__	CC	CG	AA	X_X
20._LP_1_/41_[POU]___	CT	AA	__	CT	__	__	__	GT	__	__	CC	CG	AA	X_X
21._LP_1_/41_[POU]___	CT	AA	__	CT	__	__	__	GT	__	__	CC	CG	AA	X_X
22._LP_1_/41_[POU]___	CT	AA	__	CT	__	__	__	GT	__	__	CC	CG	AA	X_X
23._LP_1_/41_[POU]___	CT	AA	__	CT	__	__	__	GT	__	__	CC	CG	AA	X_X
24._LP_1_/41_[POU]___	AA	AA	__	GG	AC	GG	__	AA	GG	AG	AG	CG	AG	X_X

Input profile: LP_1_/41_[POU] RUQ_353

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._LP_1_/41_[POU] RUQ_353

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._LP_1_/41_[POU]

identical
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C796

Dapeng Zhang, 2016

3._LP_1_/41_[POU] RUQ_353

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.170 Cri
0.126 Nac
0.655

4._LP_1_/41_[POU] GC-05-148-4-01

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

5._LP_1_/41_[POU] GC-05-148-4-01

62.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

6._LP_1_/41_[POU] GC-05-148-4-01

62.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

7._LP_1_/41_[POU] GC-05-148-4-01

62.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

8._LP_1_/41_[POU] GC-05-148-4-01

62.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP3

9._LP_1_/41_[POU] GC-05-055-2-06

62.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

10._LP_1_/41_[POU] GC-05-055-2-06

62.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

11._LP_1_/41_[POU] GC-05-055-2-06

62.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

12._LP_1_/41_[POU] GC-05-055-2-06

62.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

13._LP_1_/41_[POU] GC-05-055-2-06

62.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

14._LP_1_/41_[POU]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5401 2 > FP

Dapeng Zhang, 2016

15._LP_1_/41_[POU]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5206 2

Dapeng Zhang, 2016

16._LP_1_/41_[POU]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5206 4

Dapeng Zhang, 2016

17._LP_1_/41_[POU]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5206 5

Dapeng Zhang, 2016

18._LP_1_/41_[POU]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5206 1 > FP

Dapeng Zhang, 2016

19._LP_1_/41_[POU]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5206 3 > FP

Dapeng Zhang, 2016

20._LP_1_/41_[POU]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5401 3

Dapeng Zhang, 2016

21._LP_1_/41_[POU]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5401 4

Dapeng Zhang, 2016

22._LP_1_/41_[POU]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5401 5

Dapeng Zhang, 2016

23._LP_1_/41_[POU]

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5401 1 > FP

Dapeng Zhang, 2016

24._LP_1_/41_[POU] RUQ_353

47.2 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP560	18	TcSNP577	19	TcSNP591	20	TcSNP602
21	TcSNP619	22	TcSNP702	23	TcSNP723	24	TcSNP731	25	TcSNP799
26	TcSNP823	27	TcSNP872	28	TcSNP878	29	TcSNP891	30	TcSNP998
31	TcSNP999	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484