SNP Profiles of IMC 47 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	AC	GT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
1._PA_121_[PER]___	TT	CC	AC	GT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
2._PA_121_[PER]___	TT	CC	AC	GT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
3._PA_121_[PER]___	TT	CC	AC	GT	__	GG	AA	CC	AA	CC	GG	GG	AA	CC
4._PA_121_[PER]___	__	__	AC	GT	CC	__	AA	CC	AA	CC	__	__	AA	__
5._PA_121_[PER]___	__	__	AC	GT	CC	__	AA	CC	AA	CC	__	__	AA	__
6._PA_121_[PER]___	__	__	AC	GT	CC	__	AA	CC	AA	CC	__	__	AA	__
7._PA_121_[PER]___	__	__	AC	GT	CC	__	AA	CC	AA	CC	__	__	AA	__
8._PA_121_[PER]___	__	__	AC	GT	CC	__	AA	CC	AA	CC	__	__	AA	__
9._PA_121_[PER]___	__	__	AC	GT	__	__	AA	CC	AA	CC	__	__	AA	__
10._PA_121_[PER]___	__	__	AC	GT	CC	__	AA	__	AA	CC	__	__	AA	__
11._PA_121_[PER]___	__	__	AC	__	__	__	__	__	AA	__	GG	__	__	__
12._PA_121_[PER]___	__	__	AC	__	CC	GG	AA	GG	AA	__	__	GG	AA	CC
13._PA_121_[PER]___	TT	CC	CC	TT	TT	GG	AA	CC	AA	CC	GG	GG	AA	CC
14._PA_121_[PER]___	__	__	CC	TT	TT	__	AA	CC	AA	CC	__	__	AA	__
15._PA_121_[PER]___	__	__	CC	GT	CT	__	AA	CC	AA	CC	__	__	TT	__
16._PA_121_[PER]___	TT	CC	CC	GT	CT	GG	AA	CC	AA	CC	GG	GG	TT	CC
17._PA_121_[PER]___	AA	CC	AC	AC	GG	GG	AA	GG	AA	GG	GG	GG	AA	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AA	CT	GG	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
1._PA_121_[PER]___	AG	AA	CT	GG	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
2._PA_121_[PER]___	AG	AA	CT	GG	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
3._PA_121_[PER]___	AG	AA	CT	GG	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
4._PA_121_[PER]___	AG	AA	CT	GG	CG	CC	__	TT	__	GG	__	__	__	GG
5._PA_121_[PER]___	AG	AA	CT	GG	CG	CC	__	TT	__	GG	__	__	__	GG
6._PA_121_[PER]___	AG	AA	CT	GG	CG	CC	__	TT	__	GG	__	__	__	GG
7._PA_121_[PER]___	AG	AA	CT	GG	CG	CC	__	TT	__	GG	__	__	__	GG
8._PA_121_[PER]___	AG	AA	CT	GG	CG	CC	__	TT	__	GG	__	__	__	GG
9._PA_121_[PER]___	AG	AA	CT	GG	CG	CC	__	TT	__	GG	__	__	__	GG
10._PA_121_[PER]___	AG	AA	CT	GG	CG	CC	__	TT	__	GG	__	__	__	GG
11._PA_121_[PER]___	__	AA	__	__	CG	CC	TT	__	CC	GG	AG	__	AA	GG
12._PA_121_[PER]___	__	__	__	__	CG	CC	TT	__	__	__	__	__	__	CC
13._PA_121_[PER]___	AG	CC	TT	GT	CC	CC	TT	TT	CC	GG	AG	TT	AA	GG
14._PA_121_[PER]___	AG	CC	TT	GT	CC	CC	__	TT	__	GG	__	__	__	GG
15._PA_121_[PER]___	AA	CC	CT	GT	GG	CC	__	CC	__	GT	__	__	__	GG
16._PA_121_[PER]___	AA	CC	CT	GT	GG	CC	CT	CC	TT	GT	AG	TT	CC	GG
17._PA_121_[PER]___	__	AA	__	CC	CG	CC	AA	AA	__	CC	AG	AA	AA	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	AG	CC	CC	GG	GG	TT	TT	CC	CT	CT	GG	GG
1._PA_121_[PER]___	CC	CC	AG	CC	CC	GG	GG	TT	TT	__	CT	CT	GG	GG
2._PA_121_[PER]___	CC	CC	AG	CC	CC	GG	GG	TT	TT	__	CT	CT	GG	GG
3._PA_121_[PER]___	CC	CC	AG	CC	CC	GG	GG	TT	TT	__	CT	CT	GG	GG
4._PA_121_[PER]___	__	CC	AG	__	CC	__	__	__	TT	__	__	CT	GG	GG
5._PA_121_[PER]___	__	CC	AG	__	CC	__	__	__	TT	__	__	CT	GG	GG
6._PA_121_[PER]___	__	CC	AG	__	CC	__	__	__	TT	__	__	CT	GG	GG
7._PA_121_[PER]___	__	CC	AG	__	CC	__	__	__	TT	__	__	CT	GG	GG
8._PA_121_[PER]___	__	CC	AG	__	CC	__	__	__	TT	__	__	CT	GG	GG
9._PA_121_[PER]___	__	CC	AG	__	CC	__	__	__	TT	__	__	CT	GG	GG
10._PA_121_[PER]___	__	CC	AG	__	CC	__	__	__	TT	__	__	CT	GG	GG
11._PA_121_[PER]___	__	__	AG	CC	__	__	__	__	TT	__	__	__	GG	__
12._PA_121_[PER]___	GG	CC	__	__	CC	__	GG	TT	__	__	CT	__	CC	__
13._PA_121_[PER]___	CG	CC	AG	TT	CC	GG	AA	TT	TT	TT	TT	CT	CG	AG
14._PA_121_[PER]___	__	CC	AG	__	CC	__	__	__	TT	__	__	CT	CG	AG
15._PA_121_[PER]___	__	TT	AG	__	CC	__	__	__	GT	__	__	CT	CG	GG
16._PA_121_[PER]___	GG	TT	AG	CT	CC	TT	AG	AT	GT	TT	TT	CT	CG	GG
17._PA_121_[PER]___	__	GG	AG	__	GG	CC	GG	__	AA	GG	AG	AG	CC	GG

Input profile: PA_121_[PER] RUQ_1059

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._PA_121_[PER] GC-05-011-1-11

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

2._PA_121_[PER] GC-05-011-1-11

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

3._PA_121_[PER] GC-05-011-1-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

4._PA_121_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 3

Dapeng Zhang, 2016

5._PA_121_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 1 > FP

Dapeng Zhang, 2016

6._PA_121_[PER] RUQ_1059

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

7._PA_121_[PER]

identical
24 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P60 102

Dapeng Zhang, 2016

8._PA_121_[PER]

identical
24 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0233

Dapeng Zhang, 2016

9._PA_121_[PER]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 5 > FP

Dapeng Zhang, 2016

10._PA_121_[PER]

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D393

Dapeng Zhang, 2016

11._PA_121_[PER] RUQ_1059

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

12._PA_121_[PER] RUQ_1059

80 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

13._PA_121_[PER] GC-05-011-1-11

77.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

14._PA_121_[PER]

77.1 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 4

Dapeng Zhang, 2016

15._PA_121_[PER]

66.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 2 > FP

Dapeng Zhang, 2016

16._PA_121_[PER] GC-05-011-1-11

63.1 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

17._PA_121_[PER] RUQ_1059

44.4 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484