SNP Profiles of PA 71 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCACGGCCGGAACCAACCGGGGAACC
1._PA_156_[PER]___
____ACGGCC__AACCAACC____AA__
2._PA_156_[PER]___
____ACGGCC__AACCAACC____AA__
3._PA_156_[PER]___
____ACGGCC__AACCAACC____AA__
4._PA_156_[PER]___
____ACGGCC__AACCAACC____AA__
5._PA_156_[PER]___
____ACGGCC__AACCAACC____AA__
6._PA_156_[PER]___
____ACGGCC__AACCAACC____AA__
7._PA_156_[PER]___
____ACGG____AACCAACC____AA__
8._PA_156_[PER]___
____ACGGCC__AA__AACC____AA__
9._PA_156_[PER]___
TTCCACGGCCGGAACCAACCGGGGAACC
10._PA_156_[PER]___
TTCCACGGCCGGAACCAACCGGGGAACC
11._PA_156_[PER]___
TTCCACGGCCGGAACCAACCGGGGAACC
12._PA_156_[PER]___
TTCCACGGCCGGAACCAACCGGGGAACC
13._PA_156_[PER]___
TTCCACGG__GGAACCAACCGGGGAACC
14._PA_156_[PER]___
____AC__________AA__GG______
15._PA_156_[PER]___
____AC__CCGGAAGGAA____GGAACC
16._PA_156_[PER]___
TTCCAATTCCGGAACCAACTGGGGAACC
17._PA_156_[PER]___
TTCCAATTCCGGAACCAACTGGGGAACC
18._PA_156_[PER]___
TTCCAATTCCGGAACCAACTGGGGAACC
19._PA_156_[PER]___
TTCCAATTCCGGAACCAACTGGGGAACC
20._PA_156_[PER]___
TTCCAATT__GGAACCAACTGGGGAACC
21._PA_156_[PER]___
____AATTCC__AACCAACT____AA__
22._PA_156_[PER]___
____AATTCC__AACCAACT____AA__
23._PA_156_[PER]___
____AATTCC__AACCAACT____AA__
24._PA_156_[PER]___
____AATTCC__AACCAACT____AA__
25._PA_156_[PER]___
____AATT____AACCAACT____AA__
26._PA_156_[PER]___
AACCACCCGGGGAAGGAAGGGGGGAAGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAACCCTTCGCCTTTTCTGGGGTTACGG
1._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
2._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
3._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
4._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
5._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
6._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
7._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
8._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
9._PA_156_[PER]___
AAACCCTTCGCCTTTTCTGGGGTTACGG
10._PA_156_[PER]___
AAACCCTTCGCCTTTTCTGGGGTTACGG
11._PA_156_[PER]___
AAACCCTTCGCCTTTTCTGGGGTTACGG
12._PA_156_[PER]___
AAACCCTTCGCCTTTTCTGGGGTTACGG
13._PA_156_[PER]___
AAACCCTTCGCCTTTTCTGGGGTTACGG
14._PA_156_[PER]___
__AC____CGCCTT__CTGGGG__ACGG
15._PA_156_[PER]___
________CGCCTT____________CC
16._PA_156_[PER]___
AACCCTGTCGAACTCTCCGGGGTTAACG
17._PA_156_[PER]___
AACCCTGTCGAACTCTCCGGGGTTAACG
18._PA_156_[PER]___
AACCCTGTCGAACTCTCCGGGGTTAACG
19._PA_156_[PER]___
AACCCTGTCGAACTCTCCGGGGTTAACG
20._PA_156_[PER]___
AACCCTGTCGAACTCTCCGGGGTTAACG
21._PA_156_[PER]___
AACCCTGTCGAA__CT__GG______CG
22._PA_156_[PER]___
AACCCTGTCGAA__CT__GG______CG
23._PA_156_[PER]___
AACCCTGTCGAA__CT__GG______CG
24._PA_156_[PER]___
AACCCTGTCGAA__CT__GG______CG
25._PA_156_[PER]___
AACCCTGTCGAA__CT__GG______CG
26._PA_156_[PER]___
__AC__AACGCCAAAA__CCGGAAACCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCGGAGCCGGGGTTTTTTCTCTGGAG
1._PA_156_[PER]___
__CC__AGCC______TT____CTGGAG
2._PA_156_[PER]___
__CC__AGCC______TT____CTGGAG
3._PA_156_[PER]___
__CC__AGCC______TT____CTGGAG
4._PA_156_[PER]___
__CC__AGCC______TT____CTGGAG
5._PA_156_[PER]___
__CC__AGCC______TT____CTGGAG
6._PA_156_[PER]___
__CC__AGCC______TT____CTGGAG
7._PA_156_[PER]___
__CC__AGCC______TT____CTGGAG
8._PA_156_[PER]___
__CC__AGCC______TT____CTGGAG
9._PA_156_[PER]___
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
10._PA_156_[PER]___
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
11._PA_156_[PER]___
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
12._PA_156_[PER]___
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
13._PA_156_[PER]___
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
14._PA_156_[PER]___
____AGAG________TT______GG__
15._PA_156_[PER]___
GGCC____CC__GGTT____CT__CC__
16._PA_156_[PER]___
CCCTAAAGCCGGAGTTTTTTCTCTGGAG
17._PA_156_[PER]___
CCCTAAAGCCGGAGTTTTTTCTCTGGAG
18._PA_156_[PER]___
CCCTAAAGCCGGAGTTTTTTCTCTGGAG
19._PA_156_[PER]___
CCCTAAAGCCGGAGTTTTTTCTCTGGAG
20._PA_156_[PER]___
CCCTAAAGCCGGAGTTTTTTCTCTGGAG
21._PA_156_[PER]___
__CT__AGCC______TT____CTGGAG
22._PA_156_[PER]___
__CT__AGCC______TT____CTGGAG
23._PA_156_[PER]___
__CT__AGCC______TT____CTGGAG
24._PA_156_[PER]___
__CT__AGCC______TT____CTGGAG
25._PA_156_[PER]___
__CT__AGCC______TT____CTGGAG
26._PA_156_[PER]___
__GGAGAGGGCCGG__AAAAAGAGCCAG

Input profile: PA_156_[PER] RUQ_1531

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_156_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

2._PA_156_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

3._PA_156_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

4._PA_156_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

5._PA_156_[PER] RUQ_1531

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
24 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

7._PA_156_[PER]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016

8._PA_156_[PER]

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

9._PA_156_[PER] GC-05-137-3-39

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

10._PA_156_[PER] GC-05-137-3-39

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

11._PA_156_[PER] GC-05-137-3-39

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

12._PA_156_[PER] GC-05-137-3-39

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._PA_156_[PER] GC-05-137-3-39

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

14._PA_156_[PER] RUQ_1531

96.9 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Par
0.972

15._PA_156_[PER] PA156[PER]

80 %
20 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

16._PA_156_[PER] GC-05-138-3-40

78.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._PA_156_[PER] GC-05-138-3-40

78.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._PA_156_[PER] GC-05-138-3-40

78.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._PA_156_[PER] GC-05-138-3-40

78.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

20._PA_156_[PER] GC-05-138-3-40

78 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

21._PA_156_[PER]

75 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 4
 Dapeng Zhang, 2016

22._PA_156_[PER]

75 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 5
 Dapeng Zhang, 2016

23._PA_156_[PER]

75 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 1 > FP
 Dapeng Zhang, 2016

24._PA_156_[PER]

75 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 3 > FP
 Dapeng Zhang, 2016

25._PA_156_[PER]

73.9 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 2 > FP
 Dapeng Zhang, 2016

26._PA_156_[PER] RUQ_1531

44.6 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484