SNP Profiles of PA 195 [PER] View Data

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_Input profile	TT	CC	CC	GG	CC	GG	AC	CC	AG	CC	GG	GG	AA	CC
1._PA_56_[PER]___	__	__	CC	GG	CC	__	AC	CC	AG	CC	__	__	AA	__
2._PA_56_[PER]___	__	__	CC	GG	CC	__	AC	CC	AG	CC	__	__	AA	__
3._PA_56_[PER]___	__	__	CC	GG	CC	__	AA	CC	AG	CC	__	__	AA	__
4._PA_56_[PER]___	__	__	CC	GG	CC	__	AA	CC	AG	CC	__	__	AA	__
5._PA_56_[PER]___	__	__	CC	GG	CC	__	AA	CC	AG	CC	__	__	AA	__
6._PA_56_[PER]___	__	__	CC	GG	CC	__	AA	CC	AG	CC	__	__	AA	__
7._PA_56_[PER]___	__	__	CC	GG	CC	__	AA	CC	AG	CC	__	__	__	__
8._PA_56_[PER]___	__	__	CC	__	__	__	__	__	AG	__	GG	__	__	__
9._PA_56_[PER]___	TT	CC	CC	GG	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
10._PA_56_[PER]___	TT	CC	CC	GG	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
11._PA_56_[PER]___	TT	CC	CC	GG	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
12._PA_56_[PER]___	TT	CC	CC	GG	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
13._PA_56_[PER]___	TT	CC	CC	GG	CC	GG	AA	CC	AG	CC	GG	GG	__	CC
14._PA_56_[PER]___	AA	CC	CC	CC	GG	GG	AC	GG	AG	GG	GG	GG	AA	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AC	CT	GT	CG	CC	TT	TT	CT	GG	AG	TT	AA	GG
1._PA_56_[PER]___	AA	AC	CT	GT	CG	CC	__	TT	__	GG	__	__	__	GG
2._PA_56_[PER]___	AA	AC	CT	GT	CG	CC	__	TT	__	GG	__	__	__	GG
3._PA_56_[PER]___	AA	AC	CT	GT	CG	CC	__	TT	__	GG	__	__	__	GG
4._PA_56_[PER]___	AA	AC	CT	GT	CG	CC	__	TT	__	GG	__	__	__	GG
5._PA_56_[PER]___	AA	AC	CT	GT	CG	CC	__	TT	__	GG	__	__	__	GG
6._PA_56_[PER]___	AA	AC	CT	GT	CG	CC	__	TT	__	GG	__	__	__	GG
7._PA_56_[PER]___	AA	AC	CT	GT	CG	CC	__	TT	__	GG	__	__	__	GG
8._PA_56_[PER]___	__	AA	__	__	CG	CC	__	__	CT	GG	AG	__	AA	GG
9._PA_56_[PER]___	AA	AC	CT	GT	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
10._PA_56_[PER]___	AA	AC	CT	GT	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
11._PA_56_[PER]___	AA	AC	CT	GT	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
12._PA_56_[PER]___	AA	AC	CT	GT	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
13._PA_56_[PER]___	AA	AC	CT	GT	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
14._PA_56_[PER]___	__	AC	__	AC	CG	CC	AA	AA	__	CC	AG	AA	AA	CC

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_Input profile	CC	CC	AG	CC	CC	GG	GG	TT	TT	CT	CC	CT	CG	GG
1._PA_56_[PER]___	__	CC	AG	__	CC	__	__	__	TT	__	__	CT	CG	GG
2._PA_56_[PER]___	__	CC	AG	__	CC	__	__	__	TT	__	__	CT	CG	GG
3._PA_56_[PER]___	__	CC	AG	__	CC	__	__	__	TT	__	__	CT	CG	GG
4._PA_56_[PER]___	__	CC	AG	__	CC	__	__	__	TT	__	__	CT	CG	GG
5._PA_56_[PER]___	__	CC	AG	__	CC	__	__	__	TT	__	__	CT	CG	GG
6._PA_56_[PER]___	__	CC	AG	__	CC	__	__	__	TT	__	__	CT	CG	GG
7._PA_56_[PER]___	__	CC	AG	__	CC	__	__	__	TT	__	__	CT	CG	GG
8._PA_56_[PER]___	__	__	AG	__	__	__	__	__	TT	__	__	__	CG	__
9._PA_56_[PER]___	CC	CC	AG	CT	CC	GG	GG	TT	TT	TT	CC	CT	CG	GG
10._PA_56_[PER]___	CC	CC	AG	CT	CC	GG	GG	TT	TT	TT	CC	CT	CG	GG
11._PA_56_[PER]___	CC	CC	AG	CT	CC	GG	GG	TT	TT	TT	CC	CT	CG	GG
12._PA_56_[PER]___	CC	CC	AG	CT	CC	GG	GG	TT	TT	TT	CC	CT	CG	GG
13._PA_56_[PER]___	CC	CC	AG	CT	CC	GG	GG	TT	TT	TT	CC	CT	CG	GG
14._PA_56_[PER]___	__	GG	AG	__	GG	CC	GG	__	AA	AG	GG	AG	CG	GG

Input profile: PA_56_[PER] RUQ_32

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._PA_56_[PER] RUQ_32

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._PA_56_[PER]

identical
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 238

Dapeng Zhang, 2016

3._PA_56_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 6

Dapeng Zhang, 2016

4._PA_56_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 4

Dapeng Zhang, 2016

5._PA_56_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 3

Dapeng Zhang, 2016

6._PA_56_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 2

Dapeng Zhang, 2016

7._PA_56_[PER]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 1

Dapeng Zhang, 2016

8._PA_56_[PER] RUQ_32

96.4 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

9._PA_56_[PER] NA

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: Dead

10._PA_56_[PER] NA

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: Dead

11._PA_56_[PER] NA

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

12._PA_56_[PER] NA

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

13._PA_56_[PER] NA

95.1 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

14._PA_56_[PER] -

47.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 76, Tree: 1

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484