SNP Profiles of POUND 25 /A   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCACGGCCGGCCGGAACTAGGGAAGG
1._RB_47_[BRA]___
____ACGGCC__CCGGAACT____AA__
2._RB_47_[BRA]___
____ACGGCC__CCGGAACT____AA__
3._RB_47_[BRA]___
____ACGGCC__CCGGAACT____AA__
4._RB_47_[BRA]___
____ACGGCC__CCGGAACT____AA__
5._RB_47_[BRA]___
____ACGGCC__CCGGAACT____AA__
6._RB_47_[BRA]___
____ACGGCC__CCGGAACT____AA__
7._RB_47_[BRA]___
____ACGGCC__CCGGAACT____AA__
8._RB_47_[BRA]___
____ACGGCC__CCGGAACT____AA__
9._RB_47_[BRA]___
____ACGGCC__CCGGAACT____AA__
10._RB_47_[BRA]___
____ACGGCC__CCGGAACT____AA__
11._RB_47_[BRA]___
____ACGGCC__CCGGAACT____AA__
12._RB_47_[BRA]___
____ACGGCC__CCGGAACT____AA__
13._RB_47_[BRA]___
____ACGGCC__CCGGAACT____AA__
14._RB_47_[BRA]___
____ACGGCC__CCGGAACT____AA__
15._RB_47_[BRA]___
____ACGGCC__CCGGAACT____AA__
16._RB_47_[BRA]___
____ACGGCC__CCGGAACT____AA__
17._RB_47_[BRA]___
____ACGGCC__CCGGAACT____AA__
18._RB_47_[BRA]___
____ACGGCC__CCGGAACT____AA__
19._RB_47_[BRA]___
____ACGGCC__CCGG__CT____AA__
20._RB_47_[BRA]___
____ACGG____CCGGAACT____AA__
21._RB_47_[BRA]___
____ACGGCC____GGAACT____AA__
22._RB_47_[BRA]___
____ACGGCC____GGAACT____AA__
23._RB_47_[BRA]___
____ACGGCC__CC__AACT____AA__
24._RB_47_[BRA]___
____ACGGCC__CCGGAACT____AA__
25._RB_47_[BRA]___
____ACGGCC__AC__AACT____AA__
26._RB_47_[BRA]___
TTCCACGGCCGGCCGGAACTAGGGAAGG
27._RB_47_[BRA]___
TTCCACGGCCGGCCGGAACTAGGGAAGG
28._RB_47_[BRA]___
TTCCACGGCCGGCCGGAACTAGGGAAGG
29._RB_47_[BRA]___
TTCCACGGCCGGCCGGAACTAGGGAAGG
30._RB_47_[BRA]___
TTCCACGGCCGGCCGGAACTAGGGAAGG
31._RB_47_[BRA]___
TTCCACGGCCGGCCGGAACTAGGGAAGG
32._RB_47_[BRA]___
TTCCACGGCCGGCCGGAACTAGGGAAGG
33._RB_47_[BRA]___
TTCCACGGCCGGCCGGAACTAGGGAAGG
34._RB_47_[BRA]___
TTCCACGGCCGGCCGGAACTAGGGAAGG
35._RB_47_[BRA]___
TTCCACGGCCGGCCGGAACTAGGGAAGG
36._RB_47_[BRA]___
TTCCACGGCCGGCCGGAACTAGGGAAGG
37._RB_47_[BRA]___
TTCCACGGCCGGCCGGAACTAGGGAAGG
38._RB_47_[BRA]___
TTCCACGGCCGGCCGGAACTAGGGAAGG
39._RB_47_[BRA]___
TTCCACGGCCGGCCGGAACTAGGGAAGG
40._RB_47_[BRA]___
TTCCACGGCCGGCCGGAACTAGGGAAGG
41._RB_47_[BRA]___
TTCCACGGCCGGCCGGAACTAGGGAAGG
42._RB_47_[BRA]___
TTCCACGGCCGGCCGGAACTAGGGAAGG
43._RB_47_[BRA]___
TTCCACGGCCGGCCGGAACTAGGGAAGG
44._RB_47_[BRA]___
TTCCACGG__GGCCGGAACTAGGGAAGG
45._RB_47_[BRA]___
TTCCACGGCCGG__GGAACTAGGGAAGG
46._RB_47_[BRA]___
TTCCACGGCCGG__GGAACTAGGGAAGG
47._RB_47_[BRA]___
TTCCACGGCCGGCCGG__CTAGGGAAGG
48._RB_47_[BRA]___
TTCCACGGCCGGAC__AACTAGGGAAGG
49._RB_47_[BRA]___
____AC__CCGGCCCCAA____GGAAGG
50._RB_47_[BRA]___
AACCACCCGGGGCCCCAAAGAGGGAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAACCCGGGGCCCCCCCCGGAATTACGG
1._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
2._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
3._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
4._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
5._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
6._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
7._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
8._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
9._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
10._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
11._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
12._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
13._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
14._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
15._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
16._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
17._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
18._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
19._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
20._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
21._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
22._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
23._RB_47_[BRA]___
__ACCC__GGCC__CC__GG______GG
24._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
25._RB_47_[BRA]___
AAACCCGGGGCC__CC__GG______GG
26._RB_47_[BRA]___
AAACCCGGGGCCCCCCCTGGAATTACGG
27._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
28._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
29._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
30._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
31._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
32._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
33._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
34._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
35._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
36._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
37._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
38._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
39._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
40._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
41._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
42._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
43._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
44._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
45._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
46._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
47._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
48._RB_47_[BRA]___
AAACCCGGGGCCCCCCTTGGAATTACGG
49._RB_47_[BRA]___
________GGCCCC____________CC
50._RB_47_[BRA]___
__AC__CCGGCCGGGG__CCAAAAACCC
 29 30 31 32 33 34 35 36 37 38 39 40 41  
_Input profile
CCTTAACCGTGGTTGGCTCCCCCCAAX_X
1._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
2._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
3._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
4._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
5._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
6._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
7._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
8._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
9._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
10._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
11._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
12._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
13._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
14._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
15._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
16._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
17._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
18._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
19._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
20._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
21._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
22._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
23._RB_47_[BRA]___
__TT__________GG____CCCC__X_X
24._RB_47_[BRA]___
__TTAA________GG____CCCCAGX_X
25._RB_47_[BRA]___
__TTAA________GG____CCCCAAX_X
26._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
27._RB_47_[BRA]___
CCTTAACCGTGGTTGG__CCCCCCAAX_X
28._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
29._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
30._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
31._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
32._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
33._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
34._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
35._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
36._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
37._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
38._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
39._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
40._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
41._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
42._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
43._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
44._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
45._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
46._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
47._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
48._RB_47_[BRA]___
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
49._RB_47_[BRA]___
GGTT______GGTT____CC__GG__X_X
50._RB_47_[BRA]___
__AAAA__ACGG__CCAGGGGG__AAX_X

Input profile: RB_47_[BRA] RUQ_135

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 11
 Dapeng Zhang, 2016

2._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5303 1
 Dapeng Zhang, 2016

3._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5303 3
 Dapeng Zhang, 2016

4._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5303 4
 Dapeng Zhang, 2016

5._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5303 5
 Dapeng Zhang, 2016

6._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5303 2 > FP
 Dapeng Zhang, 2016

7._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5414 2
 Dapeng Zhang, 2016

8._RB_47_[BRA]

identical
23 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5414 3
 Dapeng Zhang, 2016

9._RB_47_[BRA]

identical
23 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5414 4
 Dapeng Zhang, 2016

10._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5414 5
 Dapeng Zhang, 2016

11._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5414 1 > FP
 Dapeng Zhang, 2016

12._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 3
 Dapeng Zhang, 2016

13._RB_47_[BRA]

identical
23 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8187 4
 Dapeng Zhang, 2016

14._RB_47_[BRA]

identical
23 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8187 5
 Dapeng Zhang, 2016

15._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 6
 Dapeng Zhang, 2016

16._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 7
 Dapeng Zhang, 2016

17._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 8
 Dapeng Zhang, 2016

18._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 9
 Dapeng Zhang, 2016

19._RB_47_[BRA]

identical
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 10
 Dapeng Zhang, 2016

20._RB_47_[BRA]

identical
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5414 2
 Dapeng Zhang, 2016

21._RB_47_[BRA]

identical
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 1
 Dapeng Zhang, 2016

22._RB_47_[BRA]

identical
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 2
 Dapeng Zhang, 2016

23._RB_47_[BRA]

identical
18 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

24._RB_47_[BRA] RUQ_135

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

25._RB_47_[BRA]

97.7 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 12
 Dapeng Zhang, 2016

26._RB_47_[BRA] GC-08-065-1-87

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

27._RB_47_[BRA] GC-08-065-1-87

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

28._RB_47_[BRA] GC-05-101-3-03

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

29._RB_47_[BRA] GC-05-101-3-03

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

30._RB_47_[BRA] GC-05-101-3-03

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

31._RB_47_[BRA] GC-05-101-3-03

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

32._RB_47_[BRA] GC-05-101-3-03

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

33._RB_47_[BRA] GC-05-161-4-14

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

34._RB_47_[BRA] GC-05-161-4-14

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

35._RB_47_[BRA] GC-05-161-4-14

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

36._RB_47_[BRA] GC-05-161-4-14

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

37._RB_47_[BRA] GC-05-161-4-14

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

38._RB_47_[BRA] GC-08-065-1-87

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

39._RB_47_[BRA] GC-08-065-1-87

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

40._RB_47_[BRA] GC-08-065-1-87

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

41._RB_47_[BRA] GC-08-065-1-87

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

42._RB_47_[BRA] GC-08-065-1-87

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

43._RB_47_[BRA] GC-08-065-1-87

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

44._RB_47_[BRA] GC-05-161-4-14

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

45._RB_47_[BRA] GC-08-065-1-87

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

46._RB_47_[BRA] GC-08-065-1-87

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

47._RB_47_[BRA] GC-08-065-1-87

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

48._RB_47_[BRA] GC-08-065-1-87

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

49._RB_47_[BRA] RUQ_135

78.9 %
19 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

50._RB_47_[BRA] GC-05-101-3-3

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 3, Rep: 3, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484