SNP Profiles of RB 47 [BRA]   View Data

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 Key

 1234567891011121314
_Input profile
TTCCACGGCCGGCCGGAACTAGGGAAGG
1._RB_47_[BRA]
__ACGGCC_CCGGAACT__AA_
2._RB_47_[BRA]
__ACGGCC_CCGGAACT__AA_
3._RB_47_[BRA]
__ACGGCC_CCGGAACT__AA_
4._RB_47_[BRA]
__ACGGCC_CCGGAACT__AA_
5._RB_47_[BRA]
__ACGGCC_CCGGAACT__AA_
6._RB_47_[BRA]
__ACGGCC_CCGGAACT__AA_
7._RB_47_[BRA]
__ACGGCC_CCGGAACT__AA_
8._RB_47_[BRA]
__ACGGCC_CCGGAACT__AA_
9._RB_47_[BRA]
__ACGGCC_CCGGAACT__AA_
10._RB_47_[BRA]
__ACGGCC_CCGGAACT__AA_
11._RB_47_[BRA]
__ACGGCC_CCGGAACT__AA_
12._RB_47_[BRA]
__ACGGCC_CCGGAACT__AA_
13._RB_47_[BRA]
__ACGGCC_CCGGAACT__AA_
14._RB_47_[BRA]
__ACGGCC_CCGGAACT__AA_
15._RB_47_[BRA]
__ACGGCC_CCGGAACT__AA_
16._RB_47_[BRA]
__ACGGCC_CCGGAACT__AA_
17._RB_47_[BRA]
__ACGGCC_CCGGAACT__AA_
18._RB_47_[BRA]
__ACGGCC_CCGGAACT__AA_
19._RB_47_[BRA]
__ACGGCC_CCGG_CT__AA_
20._RB_47_[BRA]
__ACGG__CCGGAACT__AA_
21._RB_47_[BRA]
__ACGGCC__GGAACT__AA_
22._RB_47_[BRA]
__ACGGCC__GGAACT__AA_
23._RB_47_[BRA]
__ACGGCC_CC_AACT__AA_
24._RUQ_135
__ACGGCC_CCGGAACT__AA_
25._RB_47_[BRA]
__ACGGCC_AC_AACT__AA_
26._GC-08-065-1-87
TTCCACGGCCGGCCGGAACTAGGGAAGG
27._GC-08-065-1-87
TTCCACGGCCGGCCGGAACTAGGGAAGG
28._GC-05-101-3-03
TTCCACGGCCGGCCGGAACTAGGGAAGG
29._GC-05-101-3-03
TTCCACGGCCGGCCGGAACTAGGGAAGG
30._GC-05-101-3-03
TTCCACGGCCGGCCGGAACTAGGGAAGG
31._GC-05-101-3-03
TTCCACGGCCGGCCGGAACTAGGGAAGG
32._GC-05-101-3-03
TTCCACGGCCGGCCGGAACTAGGGAAGG
33._GC-05-161-4-14
TTCCACGGCCGGCCGGAACTAGGGAAGG
34._GC-05-161-4-14
TTCCACGGCCGGCCGGAACTAGGGAAGG
35._GC-05-161-4-14
TTCCACGGCCGGCCGGAACTAGGGAAGG
36._GC-05-161-4-14
TTCCACGGCCGGCCGGAACTAGGGAAGG
37._GC-05-161-4-14
TTCCACGGCCGGCCGGAACTAGGGAAGG
38._GC-08-065-1-87
TTCCACGGCCGGCCGGAACTAGGGAAGG
39._GC-08-065-1-87
TTCCACGGCCGGCCGGAACTAGGGAAGG
40._GC-08-065-1-87
TTCCACGGCCGGCCGGAACTAGGGAAGG
41._GC-08-065-1-87
TTCCACGGCCGGCCGGAACTAGGGAAGG
42._GC-08-065-1-87
TTCCACGGCCGGCCGGAACTAGGGAAGG
43._GC-08-065-1-87
TTCCACGGCCGGCCGGAACTAGGGAAGG
44._GC-05-161-4-14
TTCCACGG_GGCCGGAACTAGGGAAGG
45._GC-08-065-1-87
TTCCACGGCCGG_GGAACTAGGGAAGG
46._GC-08-065-1-87
TTCCACGGCCGG_GGAACTAGGGAAGG
47._GC-08-065-1-87
TTCCACGGCCGGCCGG_CTAGGGAAGG
48._GC-08-065-1-87
TTCCACGGCCGGAC_AACTAGGGAAGG
49._RUQ_135
__AC_CCGGCCCCAA__GGAAGG
50._GC-05-101-3-3
AACCACCCGGGGCCCCAAAGAGGGAACC
 1516171819202122232425262728
_Input profile
AAACCCGGGGCCCCCCCCGGAATTACGG
1._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
2._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
3._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
4._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
5._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
6._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
7._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
8._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
9._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
10._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
11._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
12._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
13._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
14._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
15._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
16._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
17._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
18._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
19._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
20._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
21._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
22._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
23._RB_47_[BRA]
_ACCC_GGCC_CC_GG___GG
24._RUQ_135
AAACCCGGGGCC_CC_GG___GG
25._RB_47_[BRA]
AAACCCGGGGCC_CC_GG___GG
26._GC-08-065-1-87
AAACCCGGGGCCCCCCCTGGAATTACGG
27._GC-08-065-1-87
AAACCCGGGGCCCCCCTTGGAATTACGG
28._GC-05-101-3-03
AAACCCGGGGCCCCCCTTGGAATTACGG
29._GC-05-101-3-03
AAACCCGGGGCCCCCCTTGGAATTACGG
30._GC-05-101-3-03
AAACCCGGGGCCCCCCTTGGAATTACGG
31._GC-05-101-3-03
AAACCCGGGGCCCCCCTTGGAATTACGG
32._GC-05-101-3-03
AAACCCGGGGCCCCCCTTGGAATTACGG
33._GC-05-161-4-14
AAACCCGGGGCCCCCCTTGGAATTACGG
34._GC-05-161-4-14
AAACCCGGGGCCCCCCTTGGAATTACGG
35._GC-05-161-4-14
AAACCCGGGGCCCCCCTTGGAATTACGG
36._GC-05-161-4-14
AAACCCGGGGCCCCCCTTGGAATTACGG
37._GC-05-161-4-14
AAACCCGGGGCCCCCCTTGGAATTACGG
38._GC-08-065-1-87
AAACCCGGGGCCCCCCTTGGAATTACGG
39._GC-08-065-1-87
AAACCCGGGGCCCCCCTTGGAATTACGG
40._GC-08-065-1-87
AAACCCGGGGCCCCCCTTGGAATTACGG
41._GC-08-065-1-87
AAACCCGGGGCCCCCCTTGGAATTACGG
42._GC-08-065-1-87
AAACCCGGGGCCCCCCTTGGAATTACGG
43._GC-08-065-1-87
AAACCCGGGGCCCCCCTTGGAATTACGG
44._GC-05-161-4-14
AAACCCGGGGCCCCCCTTGGAATTACGG
45._GC-08-065-1-87
AAACCCGGGGCCCCCCTTGGAATTACGG
46._GC-08-065-1-87
AAACCCGGGGCCCCCCTTGGAATTACGG
47._GC-08-065-1-87
AAACCCGGGGCCCCCCTTGGAATTACGG
48._GC-08-065-1-87
AAACCCGGGGCCCCCCTTGGAATTACGG
49._RUQ_135
____GGCCCC______CC
50._GC-05-101-3-3
_AC_CCGGCCGGGG_CCAAAAACCC
 29303132333435363738394041 
_Input profile
CCTTAACCGTGGTTGGCTCCCCCCAAX_X
1._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
2._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
3._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
4._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
5._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
6._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
7._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
8._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
9._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
10._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
11._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
12._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
13._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
14._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
15._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
16._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
17._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
18._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
19._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
20._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
21._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
22._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
23._RB_47_[BRA]
_TT_____GG__CCCC_X_X
24._RUQ_135
_TTAA____GG__CCCCAGX_X
25._RB_47_[BRA]
_TTAA____GG__CCCCAAX_X
26._GC-08-065-1-87
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
27._GC-08-065-1-87
CCTTAACCGTGGTTGG_CCCCCCAAX_X
28._GC-05-101-3-03
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
29._GC-05-101-3-03
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
30._GC-05-101-3-03
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
31._GC-05-101-3-03
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
32._GC-05-101-3-03
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
33._GC-05-161-4-14
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
34._GC-05-161-4-14
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
35._GC-05-161-4-14
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
36._GC-05-161-4-14
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
37._GC-05-161-4-14
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
38._GC-08-065-1-87
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
39._GC-08-065-1-87
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
40._GC-08-065-1-87
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
41._GC-08-065-1-87
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
42._GC-08-065-1-87
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
43._GC-08-065-1-87
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
44._GC-05-161-4-14
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
45._GC-08-065-1-87
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
46._GC-08-065-1-87
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
47._GC-08-065-1-87
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
48._GC-08-065-1-87
CCTTAACCGTGGTTGGTTCCCCCCAAX_X
49._RUQ_135
GGTT___GGTT__CC_GG_X_X
50._GC-05-101-3-3
_AAAA_ACGG_CCAGGGGG_AAX_X

Input profile: RB_47_[BRA] RUQ_135

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 11
 Dapeng Zhang, 2016

2._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5303 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

3._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5303 3
 Dapeng Zhang, 2016

4._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5303 4
 Dapeng Zhang, 2016

5._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5303 5
 Dapeng Zhang, 2016

6._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5303 2 > FP
 Dapeng Zhang, 2016

7._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5414 2
 Dapeng Zhang, 2016

8._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5414 3
 Dapeng Zhang, 2016

9._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5414 4
 Dapeng Zhang, 2016

10._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5414 5
 Dapeng Zhang, 2016

11._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5414 1 > FP
 Dapeng Zhang, 2016

12._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 3
 Dapeng Zhang, 2016

13._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 4
 Dapeng Zhang, 2016

14._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 5
 Dapeng Zhang, 2016

15._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 6
 Dapeng Zhang, 2016

16._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 7
 Dapeng Zhang, 2016

17._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 8
 Dapeng Zhang, 2016

18._RB_47_[BRA]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 9
 Dapeng Zhang, 2016

19._RB_47_[BRA]

identical
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 10
 Dapeng Zhang, 2016

20._RB_47_[BRA]

identical
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5414 2
 Dapeng Zhang, 2016

21._RB_47_[BRA]

identical
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 1
 Dapeng Zhang, 2016

22._RB_47_[BRA]

identical
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 2
 Dapeng Zhang, 2016

23._RB_47_[BRA]

identical
18 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

24._RB_47_[BRA] RUQ_135

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

25._RB_47_[BRA]

97.7 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 12
 Dapeng Zhang, 2016

26._RB_47_[BRA] GC-08-065-1-87

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

27._RB_47_[BRA] GC-08-065-1-87

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

28._RB_47_[BRA] GC-05-101-3-03

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

29._RB_47_[BRA] GC-05-101-3-03

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

30._RB_47_[BRA] GC-05-101-3-03

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

31._RB_47_[BRA] GC-05-101-3-03

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

32._RB_47_[BRA] GC-05-101-3-03

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

33._RB_47_[BRA] GC-05-161-4-14

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

34._RB_47_[BRA] GC-05-161-4-14

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

35._RB_47_[BRA] GC-05-161-4-14

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

36._RB_47_[BRA] GC-05-161-4-14

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

37._RB_47_[BRA] GC-05-161-4-14

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

38._RB_47_[BRA] GC-08-065-1-87

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

39._RB_47_[BRA] GC-08-065-1-87

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

40._RB_47_[BRA] GC-08-065-1-87

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

41._RB_47_[BRA] GC-08-065-1-87

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

42._RB_47_[BRA] GC-08-065-1-87

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

43._RB_47_[BRA] GC-08-065-1-87

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

44._RB_47_[BRA] GC-05-161-4-14

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

45._RB_47_[BRA] GC-08-065-1-87

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

46._RB_47_[BRA] GC-08-065-1-87

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

47._RB_47_[BRA] GC-08-065-1-87

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

48._RB_47_[BRA] GC-08-065-1-87

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

49._RB_47_[BRA] RUQ_135

78.9 %
19 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

50._RB_47_[BRA] GC-05-101-3-3

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 3, Rep: 3, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484