SNP Profiles of CL 9 /11   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTACCCGTCTGGCCCCAGCCGGGGATCC
1._EET_19_[ECU]___
____CC__________AG__GG______
2._EET_19_[ECU]___
CTACCCGTCTGGCCCCAGCCGGGGATCC
3._EET_19_[ECU]___
____CCGTCT__CCCCAGCC____AT__
4._EET_19_[ECU]___
____CCGTCT__CCCCAGCC____AT__
5._EET_19_[ECU]___
____CCGTCT__CCCCAGCC____AT__
6._EET_19_[ECU]___
____CCGTCT__CCCCAGCC____AT__
7._EET_19_[ECU]___
____CCGTCT__CCCCAGCC____AT__
8._EET_19_[ECU]___
____CCGTCT__CCCCAGCC____AT__
9._EET_19_[ECU]___
____CCGTCT__CCCCAGCC____AT__
10._EET_19_[ECU]___
____CCGTCT__CCCCAGCC____AT__
11._EET_19_[ECU]___
____CCGTCT__CCCCAGCC____AT__
12._EET_19_[ECU]___
____CCGTCT__CCCCAGCC____AT__
13._EET_19_[ECU]___
____CCGTCT__CCCCAGCC____AT__
14._EET_19_[ECU]___
____CCGTCT__CCCCAGCC____AT__
15._EET_19_[ECU]___
____CCGTCT__CCCCAGCC____AT__
16._EET_19_[ECU]___
____CCGTCT__CCCCAGCC____AT__
17._EET_19_[ECU]___
____CCGTCT__CCCCAGCC____AT__
18._EET_19_[ECU]___
____CCGTCT__CCCCAGCC____AT__
19._EET_19_[ECU]___
____CCGTCT__CCCCAGCC____AT__
20._EET_19_[ECU]___
____CCGTCT__CCCCAGCC____AT__
21._EET_19_[ECU]___
____CCGTCT__CCCCAGCC____AT__
22._EET_19_[ECU]___
____CCGTCT__CCCCAGCC____AT__
23._EET_19_[ECU]___
____CCGTCT__CCCCAGCC____AT__
24._EET_19_[ECU]___
CTACCCGTCTGGCCCCAGCCGGGGATCC
25._EET_19_[ECU]___
CTACCCGTCTGGCCCCAGCCGGGGATCC
26._EET_19_[ECU]___
CTACCCGTCTGGCCCCAGCCGGGGATCC
27._EET_19_[ECU]___
CTACCCGTCTGGCCCCAGCCGGGGATCC
28._EET_19_[ECU]___
CTACCCGTCTGGCCCCAGCCGGGGATCC
29._EET_19_[ECU]___
CTACCCGTCTGGCCCCAGCCGGGGATCC
30._EET_19_[ECU]___
CTACCCGTCTGGCCCCAGCCGGGGATCC
31._EET_19_[ECU]___
CTACCCGTCTGGCCCCAGCCGGGGATCC
32._EET_19_[ECU]___
CTACCCGTCTGGCCCCAGCCGGGGATCC
33._EET_19_[ECU]___
CTACCCGTCTGGCCCCAGCCGGGGATCC
34._EET_19_[ECU]___
CTACCCGTCTGGCCCCAGCCGGGGATCC
35._EET_19_[ECU]___
CTACCCGTCTGGCCCCAGCCGGGGATCC
36._EET_19_[ECU]___
CTACCCGTCTGGCCCCAGCCGGGGATCC
37._EET_19_[ECU]___
CTACCCGTCTGGCCCCAGCCGGGGATCC
38._EET_19_[ECU]___
CTACCCGTCTGGCCCCAGCCGGGGATCC
39._EET_19_[ECU]___
CTACCCGTCTGGCCCCAGCCGGGGATCC
40._EET_19_[ECU]___
CTACCCGTCTGGCCCCAGCCGGGGATCC
41._EET_19_[ECU]___
____CC__CTGGCCGGAG____GGATCC
42._EET_19_[ECU]___
AAACCCCCAAAGCCCGAAAGGGAGATGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGACCTGGCGCCCTTTCTGGAGGTACGG
1._EET_19_[ECU]___
__AC____CGCCCT__CTGGAG__ACGG
2._EET_19_[ECU]___
GG__CTGGCGCCCTTTCTGGAGGTACGG
3._EET_19_[ECU]___
GGACCTGGCGCC__TT__GG______GG
4._EET_19_[ECU]___
GGACCTGGCGCC__TT__GG______GG
5._EET_19_[ECU]___
GGACCTGGCGCC__TT__GG______GG
6._EET_19_[ECU]___
GGACCTGGCGCC__TT__GG______GG
7._EET_19_[ECU]___
GGACCTGGCGCC__TT__GG______GG
8._EET_19_[ECU]___
GGACCTGGCGCC__TT__GG______GG
9._EET_19_[ECU]___
GGACCTGGCGCC__TT__GG______GG
10._EET_19_[ECU]___
GGACCTGGCGCC__TT__GG______GG
11._EET_19_[ECU]___
GGACCTGGCGCC__TT__GG______GG
12._EET_19_[ECU]___
GGACCTGGCGCC__TT__GG______GG
13._EET_19_[ECU]___
GGACCTGGCGCC__TT__GG______GG
14._EET_19_[ECU]___
GGACCTGGCGCC__TT__GG______GG
15._EET_19_[ECU]___
GGACCTGGCGCC__TT__GG______GG
16._EET_19_[ECU]___
GGACCTGGCGCC__TT__GG______GG
17._EET_19_[ECU]___
GGACCTGGCGCC__TT__GG______GG
18._EET_19_[ECU]___
GGACCTGGCGCC__TT__GG______GG
19._EET_19_[ECU]___
GGACCTGGCGCC__TT__GG______GG
20._EET_19_[ECU]___
GG__CTGGCGCC__TT__GG______GG
21._EET_19_[ECU]___
GG__CTGGCGCC__TT__GG______GG
22._EET_19_[ECU]___
GG__CTGGCGCC__TT__GG______GG
23._EET_19_[ECU]___
GGACCTGGCGCC______GG______GG
24._EET_19_[ECU]___
GGACCTGGCGCCCTTTCTGGAGGTACGG
25._EET_19_[ECU]___
GGACCTGGCGCCCTTTCTGGAGGTACGG
26._EET_19_[ECU]___
GGACCTGGCGCCCTTTCTGGAGGTACGG
27._EET_19_[ECU]___
GGACCTGGCGCCCTTTCTGGAGGTACGG
28._EET_19_[ECU]___
GGACCTGGCGCCCTTTCTGGAGGTACGG
29._EET_19_[ECU]___
GGACCTGGCGCCCTTTCTGGAGGTACGG
30._EET_19_[ECU]___
GGACCTGGCGCCCTTTCTGGAGGTACGG
31._EET_19_[ECU]___
GGACCTGGCGCCCTTTCTGGAGGTACGG
32._EET_19_[ECU]___
GGACCTGGCGCCCTTTCTGGAGGTACGG
33._EET_19_[ECU]___
GGACCTGGCGCCCTTTCTGGAGGTACGG
34._EET_19_[ECU]___
GGACCTGGCGCCCTTTCTGGAGGTACGG
35._EET_19_[ECU]___
GGACCTGGCGCCCTTTCTGGAGGTACGG
36._EET_19_[ECU]___
GGACCTGGCGCCCTTTCTGGAGGTACGG
37._EET_19_[ECU]___
GGACCTGGCGCCCTTTCTGGAGGTACGG
38._EET_19_[ECU]___
GGACCTGGCGCCCT__CTGGAGGTACGG
39._EET_19_[ECU]___
GG__CTGGCGCCCTTTCTGGAGGTACGG
40._EET_19_[ECU]___
GG__CTGGCGCCCTTTCTGGAGGTACGG
41._EET_19_[ECU]___
________CGCCCT____________CC
42._EET_19_[ECU]___
__AC__ACCGCCGGGG__CCAGACCCCG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGTTAGCCCCGTGGATGTCTCTCTCGAG
1._EET_19_[ECU]___
____AGCC________GT______CG__
2._EET_19_[ECU]___
CGCTAGCCCCGTGGATGT__CTCTCGAG
3._EET_19_[ECU]___
__CTAG__CC______GT____CTCGAG
4._EET_19_[ECU]___
__CTAG__CC______GT____CTCGAG
5._EET_19_[ECU]___
__CTAG__CC______GT____CTCGAG
6._EET_19_[ECU]___
__CTAG__CC______GT____CTCGAG
7._EET_19_[ECU]___
__CTAG__CC______GT____CTCGAG
8._EET_19_[ECU]___
__CTAG__CC______GT____CTCGAG
9._EET_19_[ECU]___
__CTAG__CC______GT____CTCGAG
10._EET_19_[ECU]___
__CTAG__CC______GT____CTCGAG
11._EET_19_[ECU]___
__CTAG__CC______GT____CTCGAG
12._EET_19_[ECU]___
__CTAG__CC______GT____CTCGAG
13._EET_19_[ECU]___
__CTAG__CC______GT____CTCGAG
14._EET_19_[ECU]___
__CTAG__CC______GT____CTCGAG
15._EET_19_[ECU]___
__CTAG__CC______GT____CTCGAG
16._EET_19_[ECU]___
__CTAG__CC______GT____CTCGAG
17._EET_19_[ECU]___
__CTAG__CC______GT____CTCGAG
18._EET_19_[ECU]___
__CTAG__CC______GT____CTCGAG
19._EET_19_[ECU]___
__CTAG__CC______GT____CTCGAG
20._EET_19_[ECU]___
__CTAG__CC______GT____CTCGAG
21._EET_19_[ECU]___
__CTAG__CC______GT____CTCGAG
22._EET_19_[ECU]___
__CTAG__CC______GT____CTCGAG
23._EET_19_[ECU]___
__CTAG__CC______GT____CTCGAG
24._EET_19_[ECU]___
CGCTAGCCCCGTGGATGTTTCTCTCGAG
25._EET_19_[ECU]___
CGCTAGCCCCGTGGATGTTTCTCTCGAG
26._EET_19_[ECU]___
CGCTAGCCCCGTGGATGTTTCTCTCGAG
27._EET_19_[ECU]___
CGCTAGCCCCGTGGATGTTTCTCTCGAG
28._EET_19_[ECU]___
CGCTAGCCCCGTGGATGTTTCTCTCGAG
29._EET_19_[ECU]___
CGCTAGCCCCGTGGATGTTTCTCTCGAG
30._EET_19_[ECU]___
CGCTAGCCCCGTGGATGTTTCTCTCGAG
31._EET_19_[ECU]___
CGCTAGCCCCGTGGATGTTTCTCTCGAG
32._EET_19_[ECU]___
CGCTAGCCCCGTGGATGTTTCTCTCGAG
33._EET_19_[ECU]___
CGCTAGCCCCGTGGATGTTTCTCTCGAG
34._EET_19_[ECU]___
CGCTAGCCCCGTGGATGTTTCTCTCGAG
35._EET_19_[ECU]___
CGCTAGCCCCGTGGATGTTTCTCTCGAG
36._EET_19_[ECU]___
CGCTAGCCCCGTGGATGTTTCTCTCGAG
37._EET_19_[ECU]___
CGCTAGCCCCGTGGATGTTTCTCTCGAG
38._EET_19_[ECU]___
CGCTAGCCCCGTGGATGTTTCTCTCGAG
39._EET_19_[ECU]___
CGCTAGCCCCGTGGATGTTTCTCTCGAG
40._EET_19_[ECU]___
CGCTAGCCCCGTGGATGTTTCTCTCGAG
41._EET_19_[ECU]___
CGCT____CC__GGAT____CT__CG__
42._EET_19_[ECU]___
__AGAA__GGACGG__CCAGGGAACGAG

Input profile: EET_19_[ECU] RUQ_1630

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._EET_19_[ECU] RUQ_1630

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Ame
0.246 Cri
0.121 Nac
0.612

2._EET_19_[ECU] GC-05-184-4-37

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 1
 Dapeng Zhang, 2016

4._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 13
 Dapeng Zhang, 2016

5._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 12
 Dapeng Zhang, 2016

6._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 11
 Dapeng Zhang, 2016

7._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 10
 Dapeng Zhang, 2016

8._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 9
 Dapeng Zhang, 2016

9._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 8
 Dapeng Zhang, 2016

10._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 7
 Dapeng Zhang, 2016

11._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 6
 Dapeng Zhang, 2016

12._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 5
 Dapeng Zhang, 2016

13._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 4
 Dapeng Zhang, 2016

14._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 3
 Dapeng Zhang, 2016

15._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 2
 Dapeng Zhang, 2016

16._EET_19_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 1
 Dapeng Zhang, 2016

17._EET_19_[ECU]

97.9 %
24 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

18._EET_19_[ECU] RUQ_1630

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

19._EET_19_[ECU]

97.9 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F462 T9
 Dapeng Zhang, 2016

20._EET_19_[ECU]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 3
 Dapeng Zhang, 2016

21._EET_19_[ECU]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 5
 Dapeng Zhang, 2016

22._EET_19_[ECU]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 4 > FP
 Dapeng Zhang, 2016

23._EET_19_[ECU]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 2 > FP
 Dapeng Zhang, 2016

24._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

25._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

26._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

27._EET_19_[ECU] GC-05-184-4-37

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

28._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

29._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

30._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

31._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

32._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

33._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

34._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

35._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

36._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

37._EET_19_[ECU] GC-08-085-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

38._EET_19_[ECU] GC-05-184-4-37

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

39._EET_19_[ECU] GC-05-184-4-37

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

40._EET_19_[ECU] GC-05-184-4-37

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

41._EET_19_[ECU] RUQ_1630

87.5 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

42._EET_19_[ECU] MITC-000062

43.1 %
36 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484