SNP Profiles of LCT EEN 37 /F   View Data

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 Key

 1234567891011121314
_Input profile
CGATAAGGTTCCAGCCATAAAGACCCGG
1._RUQ_153
GGATAAGGTTCCAGCCATAAAGACCCGG
2._RUQ_153
GGATAAGGTTCCAGCCATAAAGACCCGG
3._RUQ_153
__AAGGTTCCAGCC-_AGACCCGG
4._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
5._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
6._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
7._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
8._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
9._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
10._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
11._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
12._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
13._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
14._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
15._LCT_EEN_37_/F
CGATAAGG_CCAGCCATAAAGACCCGG
16._GC-02-027-4-03
CGATAAGGTTCCAGCCATAAAGACCCGG
17._GC-02-027-4-03
CGATAAGGTTCCAGCCATAAAGACCCGG
18._GC-02-027-4-03
CGATAAGGTTCCAGCCATAAAGACCCGG
19._GC-02-027-4-03
CGATAAGGTTCCAGCCATAAAGACCCGG
20._GC-02-027-4-03
CGATAAGGTTCCAGCCATAAAGACCCGG
21._GC-08-160-4-03
CGATAAGGTTCCAGCCATAAAGACCCGG
22._GC-08-161-4-04
CGATAAGGTTCCAGCCATAAAGACCCGG
23._GC-08-161-4-04
CGATAAGGTTCCAGCCATAAAGACCCGG
24._GC-08-161-4-04
CGATAAGGTTCCAGCCATAAAGACCCGG
25._GC-08-161-4-04
CGATAAGGTTCCAGCCATAAAGACCCGG
26._GC-08-161-4-04
CGATAAGGTTCCAGCCATAAAGACCCGG
27._GC-02-027-4-03
CGATAAGG_CCAGCCATAAAGACCCGG
28._LCT_EEN_37_/F
CGATCCGTTTCCAGCTAAAGGGACCTGT
29._GC-02-027-4-03
CGATCCGTTTCCAGCTAAAGGGACCTGT
30._LCT_EEN_37_/F
CGATACGTCTACAACTAAGGAGACCTGT
31._LCT_EEN_37_/F
CGATACGTCTACAACTAAGGAGACCTGT
32._LCT_EEN_37_/F
CGATACGTCTACAACTAAGGAGACCTGT
33._GC-08-160-4-03
CGATACGTCTACAACTAAGGAGACCTGT
34._GC-08-160-4-03
CGATACGTCTACAACTAAGGAGACCTGT
35._GC-08-160-4-03
CGATACGTCTACAACTAAGGAGACCTGT
36._LCT_EEN_37_/F
CGATACGTCTACAACTAAGGAGACCTGT
37._GC-08-160-4-03
CGATACGTCTACAACTAAGGAGACCTGT
38._LCT_EEN_37_/F
GGATAATTTTAAAGCCAAGGGGAA_GT
39._GC-08-160-4-03
GGATAATTTTAAAGCCAAGGGGAA_GT
40._RUQ_153
CGATAACCAACCAGGGATAA_AC_CC
 1516171819202122232425262728
_Input profile
GGCCTTAAGGCTCGCCTTTTCGAACTAA
1._RUQ_153
GGCCTTAAGG_CG_TTTTCGAACTAA
2._RUQ_153
GGCCTTAAGG_CG_TTTTCGAACTAA
3._RUQ_153
CGCCTT_GG_CGCCTT____AA
4._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
5._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
6._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
7._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
8._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
9._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
10._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
11._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
12._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
13._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
14._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
15._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
16._GC-02-027-4-03
GGCCTTGGGGCCCGCGTTTTCGAACTAA
17._GC-02-027-4-03
GGCCTTGGGGCCCGCGTTTTCGAACTAA
18._GC-02-027-4-03
GGCCTTGGGGCCCGCGTTTTCGAACTAA
19._GC-02-027-4-03
GGCCTTGGGGCCCGCGTTTTCGAACTAA
20._GC-02-027-4-03
GGCCTTGGGGCCCGCGTTTTCGAACTAA
21._GC-08-160-4-03
GGCCTTGGGGCCCGCGTTTTCGAACTAA
22._GC-08-161-4-04
GGCCTTGGGGCCCGCGTTTTCGAACTAA
23._GC-08-161-4-04
GGCCTTGGGGCCCGCGTTTTCGAACTAA
24._GC-08-161-4-04
GGCCTTGGGGCCCGCGTTTTCGAACTAA
25._GC-08-161-4-04
GGCCTTGGGGCCCGCGTTTTCGAACTAA
26._GC-08-161-4-04
GGCCTTGGGGCCCGCGTTTTCGAACTAA
27._GC-02-027-4-03
GGCCTTGGGGCCCGCGTTTTCGAACTAA
28._LCT_EEN_37_/F
CGCCCTAAGT_CG_CTCTCGATCCAG
29._GC-02-027-4-03
CGCCCTAAGTCGCGGGCTCTCGATCCAG
30._LCT_EEN_37_/F
CCCCTTAGGG_CG_CTCTCGATCTAG
31._LCT_EEN_37_/F
CCCCTTAGGG_CG_CTCTCGATCTAG
32._LCT_EEN_37_/F
CCCCTTAGGG_CG_CTCTCGATCTAG
33._GC-08-160-4-03
CCCCTTAGGGCGCGCCCTCTCGATCTAG
34._GC-08-160-4-03
CCCCTTAGGGCGCGCCCTCTCGATCTAG
35._GC-08-160-4-03
CCCCTTAGGGCGCGCCCTCTCGATCTAG
36._LCT_EEN_37_/F
CC_TTAGGG_CG_CTCTCGATCTAG
37._GC-08-160-4-03
CC_TTAGGGCGCGCCCTCTCGATCTAG
38._LCT_EEN_37_/F
CGACCTGGGG_GG_CCCTCGAACCAG
39._GC-08-160-4-03
CGACCTGGGGCGGGCCCCCTCGAACCAG
40._RUQ_153
CGCCAA_CCGGCG_AAAACGAAAGAA
 2930313233343536373839   
_Input profile
CCGGATTTGGTTCCCTCTCGGGX_XX_XX_X
1._RUQ_153
CCGGATTTGGTTCCCTCTCGGGX_XX_XX_X
2._RUQ_153
CCGGATTTGGTTCCCTCTCGGGX_XX_XX_X
3._RUQ_153
CC___GG___CTCGGGX_XX_XX_X
4._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
5._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
6._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
7._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
8._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
9._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
10._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
11._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
12._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
13._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
14._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
15._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
16._GC-02-027-4-03
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
17._GC-02-027-4-03
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
18._GC-02-027-4-03
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
19._GC-02-027-4-03
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
20._GC-02-027-4-03
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
21._GC-08-160-4-03
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
22._GC-08-161-4-04
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
23._GC-08-161-4-04
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
24._GC-08-161-4-04
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
25._GC-08-161-4-04
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
26._GC-08-161-4-04
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
27._GC-02-027-4-03
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
28._LCT_EEN_37_/F
CCAGATCTGTCT_CTCTCCAGX_XX_XX_X
29._GC-02-027-4-03
CCAGATCTGTCT_CTCTCCAGX_XX_XX_X
30._LCT_EEN_37_/F
CCAGAACTGTCCACCTCTCGAAX_XX_XX_X
31._LCT_EEN_37_/F
CCAGAACTGTCCACCTCTCGAAX_XX_XX_X
32._LCT_EEN_37_/F
CCAGAACTGTCCACCTCTCGAAX_XX_XX_X
33._GC-08-160-4-03
CCAGAACTGTCCACCTCTCGAAX_XX_XX_X
34._GC-08-160-4-03
CCAGAACTGTCCACCTCTCGAAX_XX_XX_X
35._GC-08-160-4-03
CCAGAACTGTCCACCTCTCGAAX_XX_XX_X
36._LCT_EEN_37_/F
CCAGAACTGTCCACCTCTCGAAX_XX_XX_X
37._GC-08-160-4-03
CCAGAACTGTCCACCTCTCGAAX_XX_XX_X
38._LCT_EEN_37_/F
CCAGAACCTTTTCCTTCTCGAGX_XX_XX_X
39._GC-08-160-4-03
CCAGAACCTTTTCCTTCTCGAGX_XX_XX_X
40._RUQ_153
GGGGAT_CCAA_AGAGCGGGX_XX_XX_X

Input profile: LCT_EEN_37_/F

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 133 T3
 Dapeng Zhang, 2014

1._LCT_EEN_37_/F RUQ_153

98.6 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._LCT_EEN_37_/F RUQ_153

98.6 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._LCT_EEN_37_/F RUQ_153

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 4
 Dapeng Zhang, 2016

5._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 11
 Dapeng Zhang, 2016

6._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 10
 Dapeng Zhang, 2016

7._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 9
 Dapeng Zhang, 2016

8._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 5
 Dapeng Zhang, 2016

9._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 2
 Dapeng Zhang, 2016

10._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 9 > FP
 Dapeng Zhang, 2016

11._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 2 > FP
 Dapeng Zhang, 2016

12._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 14 > F
 Dapeng Zhang, 2016

13._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 10 > F
 Dapeng Zhang, 2016

14._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 12
 Dapeng Zhang, 2016

15._LCT_EEN_37_/F

97.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

16._LCT_EEN_37_/F GC-02-027-4-03

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

17._LCT_EEN_37_/F GC-02-027-4-03

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

18._LCT_EEN_37_/F GC-02-027-4-03

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

19._LCT_EEN_37_/F GC-02-027-4-03

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

20._LCT_EEN_37_/F GC-02-027-4-03

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

21._LCT_EEN_37_/F GC-08-160-4-03

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

22._LCT_EEN_37_/F GC-08-161-4-04

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._LCT_EEN_37_/F GC-08-161-4-04

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

24._LCT_EEN_37_/F GC-08-161-4-04

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

25._LCT_EEN_37_/F GC-08-161-4-04

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

26._LCT_EEN_37_/F GC-08-161-4-04

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

27._LCT_EEN_37_/F GC-02-027-4-03

94.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

28._LCT_EEN_37_/F

68.1 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 3
 Dapeng Zhang, 2016

29._LCT_EEN_37_/F GC-02-027-4-03

64.5 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

30._LCT_EEN_37_/F

63.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 7
 Dapeng Zhang, 2016

31._LCT_EEN_37_/F

63.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 2
 Dapeng Zhang, 2016

32._LCT_EEN_37_/F

63.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 5
 Dapeng Zhang, 2016

33._LCT_EEN_37_/F GC-08-160-4-03

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

34._LCT_EEN_37_/F GC-08-160-4-03

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

35._LCT_EEN_37_/F GC-08-160-4-03

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

36._LCT_EEN_37_/F

62.5 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 1
 Dapeng Zhang, 2016

37._LCT_EEN_37_/F GC-08-160-4-03

61.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

38._LCT_EEN_37_/F

58.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 3
 Dapeng Zhang, 2016

39._LCT_EEN_37_/F GC-08-160-4-03

57.9 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

40._LCT_EEN_37_/F RUQ_153

53 %
33 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP836
21TcSNP872 22TcSNP878 23TcSNP891 24TcSNP917 25TcSNP929
26TcSNP953 27TcSNP994 28TcSNP998 29TcSNP1060 30TcSNP1062
31TcSNP1075 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484