SNP Profiles of LCT EEN 73/D   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CGATAAGGTTCCAGCCATAAAGACCCGG
1._LCT_EEN_37_/F___
GGATAAGGTTCCAGCCATAAAGACCCGG
2._LCT_EEN_37_/F___
GGATAAGGTTCCAGCCATAAAGACCCGG
3._LCT_EEN_37_/F___
____AAGGTTCCAGCC____AGACCCGG
4._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
5._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
6._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
7._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
8._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
9._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
10._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
11._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
12._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
13._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
14._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
15._LCT_EEN_37_/F___
CGATAAGG__CCAGCCATAAAGACCCGG
16._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
17._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
18._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
19._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
20._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
21._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
22._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
23._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
24._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
25._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
26._LCT_EEN_37_/F___
CGATAAGGTTCCAGCCATAAAGACCCGG
27._LCT_EEN_37_/F___
CGATAAGG__CCAGCCATAAAGACCCGG
28._LCT_EEN_37_/F___
CGATCCGTTTCCAGCTAAAGGGACCTGT
29._LCT_EEN_37_/F___
CGATCCGTTTCCAGCTAAAGGGACCTGT
30._LCT_EEN_37_/F___
CGATACGTCTACAACTAAGGAGACCTGT
31._LCT_EEN_37_/F___
CGATACGTCTACAACTAAGGAGACCTGT
32._LCT_EEN_37_/F___
CGATACGTCTACAACTAAGGAGACCTGT
33._LCT_EEN_37_/F___
CGATACGTCTACAACTAAGGAGACCTGT
34._LCT_EEN_37_/F___
CGATACGTCTACAACTAAGGAGACCTGT
35._LCT_EEN_37_/F___
CGATACGTCTACAACTAAGGAGACCTGT
36._LCT_EEN_37_/F___
CGATACGTCTACAACTAAGGAGACCTGT
37._LCT_EEN_37_/F___
CGATACGTCTACAACTAAGGAGACCTGT
38._LCT_EEN_37_/F___
GGATAATTTTAAAGCCAAGGGGAA__GT
39._LCT_EEN_37_/F___
GGATAATTTTAAAGCCAAGGGGAA__GT
40._LCT_EEN_37_/F___
CGATAACCAACCAGGGATAA__AC__CC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGCCTTAAGGCTCGCCTTTTCGAACTAA
1._LCT_EEN_37_/F___
GGCCTTAAGG__CG__TTTTCGAACTAA
2._LCT_EEN_37_/F___
GGCCTTAAGG__CG__TTTTCGAACTAA
3._LCT_EEN_37_/F___
CGCCTT__GG__CGCCTT________AA
4._LCT_EEN_37_/F___
GGCCTTGGGG__CG__TTTTCGAACTAA
5._LCT_EEN_37_/F___
GGCCTTGGGG__CG__TTTTCGAACTAA
6._LCT_EEN_37_/F___
GGCCTTGGGG__CG__TTTTCGAACTAA
7._LCT_EEN_37_/F___
GGCCTTGGGG__CG__TTTTCGAACTAA
8._LCT_EEN_37_/F___
GGCCTTGGGG__CG__TTTTCGAACTAA
9._LCT_EEN_37_/F___
GGCCTTGGGG__CG__TTTTCGAACTAA
10._LCT_EEN_37_/F___
GGCCTTGGGG__CG__TTTTCGAACTAA
11._LCT_EEN_37_/F___
GGCCTTGGGG__CG__TTTTCGAACTAA
12._LCT_EEN_37_/F___
GGCCTTGGGG__CG__TTTTCGAACTAA
13._LCT_EEN_37_/F___
GGCCTTGGGG__CG__TTTTCGAACTAA
14._LCT_EEN_37_/F___
GGCCTTGGGG__CG__TTTTCGAACTAA
15._LCT_EEN_37_/F___
GGCCTTGGGG__CG__TTTTCGAACTAA
16._LCT_EEN_37_/F___
GGCCTTGGGGCCCGCGTTTTCGAACTAA
17._LCT_EEN_37_/F___
GGCCTTGGGGCCCGCGTTTTCGAACTAA
18._LCT_EEN_37_/F___
GGCCTTGGGGCCCGCGTTTTCGAACTAA
19._LCT_EEN_37_/F___
GGCCTTGGGGCCCGCGTTTTCGAACTAA
20._LCT_EEN_37_/F___
GGCCTTGGGGCCCGCGTTTTCGAACTAA
21._LCT_EEN_37_/F___
GGCCTTGGGGCCCGCGTTTTCGAACTAA
22._LCT_EEN_37_/F___
GGCCTTGGGGCCCGCGTTTTCGAACTAA
23._LCT_EEN_37_/F___
GGCCTTGGGGCCCGCGTTTTCGAACTAA
24._LCT_EEN_37_/F___
GGCCTTGGGGCCCGCGTTTTCGAACTAA
25._LCT_EEN_37_/F___
GGCCTTGGGGCCCGCGTTTTCGAACTAA
26._LCT_EEN_37_/F___
GGCCTTGGGGCCCGCGTTTTCGAACTAA
27._LCT_EEN_37_/F___
GGCCTTGGGGCCCGCGTTTTCGAACTAA
28._LCT_EEN_37_/F___
CGCCCTAAGT__CG__CTCTCGATCCAG
29._LCT_EEN_37_/F___
CGCCCTAAGTCGCGGGCTCTCGATCCAG
30._LCT_EEN_37_/F___
CCCCTTAGGG__CG__CTCTCGATCTAG
31._LCT_EEN_37_/F___
CCCCTTAGGG__CG__CTCTCGATCTAG
32._LCT_EEN_37_/F___
CCCCTTAGGG__CG__CTCTCGATCTAG
33._LCT_EEN_37_/F___
CCCCTTAGGGCGCGCCCTCTCGATCTAG
34._LCT_EEN_37_/F___
CCCCTTAGGGCGCGCCCTCTCGATCTAG
35._LCT_EEN_37_/F___
CCCCTTAGGGCGCGCCCTCTCGATCTAG
36._LCT_EEN_37_/F___
CC__TTAGGG__CG__CTCTCGATCTAG
37._LCT_EEN_37_/F___
CC__TTAGGGCGCGCCCTCTCGATCTAG
38._LCT_EEN_37_/F___
CGACCTGGGG__GG__CCCTCGAACCAG
39._LCT_EEN_37_/F___
CGACCTGGGGCGGGCCCCCTCGAACCAG
40._LCT_EEN_37_/F___
CGCCAA__CCGGCG__AAAACGAAAGAA
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
CCGGATTTGGTTCCCTCTCGGGX_XX_XX_X
1._LCT_EEN_37_/F___
CCGGATTTGGTTCCCTCTCGGGX_XX_XX_X
2._LCT_EEN_37_/F___
CCGGATTTGGTTCCCTCTCGGGX_XX_XX_X
3._LCT_EEN_37_/F___
CC______GG______CTCGGGX_XX_XX_X
4._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
5._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
6._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
7._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
8._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
9._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
10._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
11._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
12._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
13._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
14._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
15._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
16._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
17._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
18._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
19._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
20._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
21._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
22._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
23._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
24._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
25._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
26._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
27._LCT_EEN_37_/F___
CCGGATTTGGTT__CTCTCGGGX_XX_XX_X
28._LCT_EEN_37_/F___
CCAGATCTGTCT__CTCTCCAGX_XX_XX_X
29._LCT_EEN_37_/F___
CCAGATCTGTCT__CTCTCCAGX_XX_XX_X
30._LCT_EEN_37_/F___
CCAGAACTGTCCACCTCTCGAAX_XX_XX_X
31._LCT_EEN_37_/F___
CCAGAACTGTCCACCTCTCGAAX_XX_XX_X
32._LCT_EEN_37_/F___
CCAGAACTGTCCACCTCTCGAAX_XX_XX_X
33._LCT_EEN_37_/F___
CCAGAACTGTCCACCTCTCGAAX_XX_XX_X
34._LCT_EEN_37_/F___
CCAGAACTGTCCACCTCTCGAAX_XX_XX_X
35._LCT_EEN_37_/F___
CCAGAACTGTCCACCTCTCGAAX_XX_XX_X
36._LCT_EEN_37_/F___
CCAGAACTGTCCACCTCTCGAAX_XX_XX_X
37._LCT_EEN_37_/F___
CCAGAACTGTCCACCTCTCGAAX_XX_XX_X
38._LCT_EEN_37_/F___
CCAGAACCTTTTCCTTCTCGAGX_XX_XX_X
39._LCT_EEN_37_/F___
CCAGAACCTTTTCCTTCTCGAGX_XX_XX_X
40._LCT_EEN_37_/F___
GGGGAT__CCAA__AGAGCGGGX_XX_XX_X

Input profile: LCT_EEN_37_/F

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 133 T3
 Dapeng Zhang, 2014

1._LCT_EEN_37_/F RUQ_153

98.6 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._LCT_EEN_37_/F RUQ_153

98.6 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._LCT_EEN_37_/F RUQ_153

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 4
 Dapeng Zhang, 2016

5._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 11
 Dapeng Zhang, 2016

6._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 10
 Dapeng Zhang, 2016

7._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 9
 Dapeng Zhang, 2016

8._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 5
 Dapeng Zhang, 2016

9._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 2
 Dapeng Zhang, 2016

10._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 9 > FP
 Dapeng Zhang, 2016

11._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 2 > FP
 Dapeng Zhang, 2016

12._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 14 > F
 Dapeng Zhang, 2016

13._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 10 > F
 Dapeng Zhang, 2016

14._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 12
 Dapeng Zhang, 2016

15._LCT_EEN_37_/F

97.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 4
 Dapeng Zhang, 2016

16._LCT_EEN_37_/F GC-02-027-4-03

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

17._LCT_EEN_37_/F GC-02-027-4-03

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

18._LCT_EEN_37_/F GC-02-027-4-03

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

19._LCT_EEN_37_/F GC-02-027-4-03

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

20._LCT_EEN_37_/F GC-02-027-4-03

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

21._LCT_EEN_37_/F GC-08-160-4-03

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

22._LCT_EEN_37_/F GC-08-161-4-04

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._LCT_EEN_37_/F GC-08-161-4-04

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

24._LCT_EEN_37_/F GC-08-161-4-04

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

25._LCT_EEN_37_/F GC-08-161-4-04

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

26._LCT_EEN_37_/F GC-08-161-4-04

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

27._LCT_EEN_37_/F GC-02-027-4-03

94.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

28._LCT_EEN_37_/F

68.1 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 3
 Dapeng Zhang, 2016

29._LCT_EEN_37_/F GC-02-027-4-03

64.5 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

30._LCT_EEN_37_/F

63.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 7
 Dapeng Zhang, 2016

31._LCT_EEN_37_/F

63.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 2
 Dapeng Zhang, 2016

32._LCT_EEN_37_/F

63.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 5
 Dapeng Zhang, 2016

33._LCT_EEN_37_/F GC-08-160-4-03

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

34._LCT_EEN_37_/F GC-08-160-4-03

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

35._LCT_EEN_37_/F GC-08-160-4-03

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

36._LCT_EEN_37_/F

62.5 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 1
 Dapeng Zhang, 2016

37._LCT_EEN_37_/F GC-08-160-4-03

61.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

38._LCT_EEN_37_/F

58.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 3
 Dapeng Zhang, 2016

39._LCT_EEN_37_/F GC-08-160-4-03

57.9 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

40._LCT_EEN_37_/F RUQ_153

53 %
33 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP836
21TcSNP872 22TcSNP878 23TcSNP891 24TcSNP917 25TcSNP929
26TcSNP953 27TcSNP994 28TcSNP998 29TcSNP1060 30TcSNP1062
31TcSNP1075 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484