SNP Profiles of EET 397 [ECU] View Data

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_Input profile	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
1._EET_397_[ECU]	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
2._EET_397_[ECU]	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
3._EET_397_[ECU]	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
4._EET_397_[ECU]	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
5._EET_397_[ECU]	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
6._EET_397_[ECU]	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
7._GC-08-274-8-46	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
8._GC-08-274-8-46	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
9._GC-08-274-8-46	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
10._GC-08-274-8-46	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
11._GC-08-274-8-46	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
12._GC-08-274-8-46	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
13._GC-08-274-8-46	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
14._RUQ_759	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
15._EET_397_[ECU]	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
16._RUQ_759	__	__	CC	__	__	__	__	GG	__	CC	__	GG	__	AA
17._RUQ_759	__	__	CC	__	__	__	__	GG	__	CC	__	GG	__	AA
18._RUQ_759	__	GG	CC	TT	__	__	__	GG	__	__	__	__	CC	AA
19._RUQ_759	GG	GG	GG	AA	GG	CC	AG	CC	__	__	AT	GG	GG	AA
20._EET_397_[ECU]_Fld#_117_Plt#_2	GG	GG	GG	AA	GG	CC	AG	CC	__	__	AT	GG	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
1._EET_397_[ECU]	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
2._EET_397_[ECU]	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
3._EET_397_[ECU]	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
4._EET_397_[ECU]	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
5._EET_397_[ECU]	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
6._EET_397_[ECU]	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
7._GC-08-274-8-46	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
8._GC-08-274-8-46	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
9._GC-08-274-8-46	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
10._GC-08-274-8-46	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
11._GC-08-274-8-46	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
12._GC-08-274-8-46	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
13._GC-08-274-8-46	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
14._RUQ_759	CT	AT	CG	CT	CT	CG	GG	AG	TT	CC	CG	GG	CC	AA
15._EET_397_[ECU]	CT	AT	CG	CT	CT	CG	GG	AG	TT	CC	CG	GG	CC	AA
16._RUQ_759	__	__	__	__	__	CG	GG	AG	__	CC	CG	__	__	AA
17._RUQ_759	__	__	__	__	__	CG	GG	AG	__	CC	CG	__	__	AA
18._RUQ_759	__	__	__	__	CT	CG	GG	__	TT	__	CG	GG	CC	AA
19._RUQ_759	AG	AT	CG	AG	AG	CG	CC	__	AA	CC	CG	CC	__	AA
20._EET_397_[ECU]_Fld#_117_Plt#_2	AG	AT	CG	AG	AG	CG	CC	__	AA	CC	CG	CC	__	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AG	GG	AT	CT	CC	CC	TT	GG	AC	AA	CG	X_X	X_X	X_X
1._EET_397_[ECU]	AG	GG	AT	CT	CC	CC	TT	GG	AC	AA	CG	X_X	X_X	X_X
2._EET_397_[ECU]	AG	GG	AT	CT	CC	CC	TT	GG	AC	AA	CG	X_X	X_X	X_X
3._EET_397_[ECU]	AG	GG	AT	CT	CC	CC	TT	GG	AC	AA	CG	X_X	X_X	X_X
4._EET_397_[ECU]	AG	GG	AT	CT	CC	CC	TT	GG	AC	AA	CG	X_X	X_X	X_X
5._EET_397_[ECU]	AG	GG	AT	CT	CC	CC	TT	GG	AC	AA	CG	X_X	X_X	X_X
6._EET_397_[ECU]	AG	GG	AT	CT	CC	CC	TT	GG	AC	AA	CG	X_X	X_X	X_X
7._GC-08-274-8-46	AG	GG	AT	CT	CC	CC	TT	GG	AC	AA	CG	X_X	X_X	X_X
8._GC-08-274-8-46	AG	GG	AT	CT	CC	CC	TT	GG	AC	AA	CG	X_X	X_X	X_X
9._GC-08-274-8-46	AG	GG	AT	CT	CC	CC	TT	GG	AC	AA	CG	X_X	X_X	X_X
10._GC-08-274-8-46	AG	GG	AT	CT	CC	CC	TT	GG	AC	AA	CG	X_X	X_X	X_X
11._GC-08-274-8-46	AG	GG	AT	CT	CC	CC	TT	GG	AC	AA	CG	X_X	X_X	X_X
12._GC-08-274-8-46	AG	GG	AT	CT	CC	CC	TT	GG	AC	AA	CG	X_X	X_X	X_X
13._GC-08-274-8-46	AG	GG	AT	CT	CC	CC	TT	GG	AC	AA	CG	X_X	X_X	X_X
14._RUQ_759	AG	GG	AT	CT	CC	CC	TT	GG	AC	AA	CG	X_X	X_X	X_X
15._EET_397_[ECU]	AG	AG	AT	CT	__	CC	TT	GG	AC	AA	CG	X_X	X_X	X_X
16._RUQ_759	__	__	__	__	__	__	__	__	AC	__	__	X_X	X_X	X_X
17._RUQ_759	__	__	__	__	__	__	__	__	AC	__	__	X_X	X_X	X_X
18._RUQ_759	AG	__	TT	CT	CC	CC	__	GG	CC	__	__	X_X	X_X	X_X
19._RUQ_759	__	GG	AT	AG	GG	CC	AA	CC	AC	AA	CG	X_X	X_X	X_X
20._EET_397_[ECU]_Fld#_117_Plt#_2	__	GG	AT	AG	GG	CC	AA	CC	AC	AA	CG	X_X	X_X	X_X

Input profile: EET_397_[ECU]

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Mars Center for Cocoa Science, Brazil

Location: 8846 2

Dapeng Zhang, 2016

1._EET_397_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8846 9

Dapeng Zhang, 2016

2._EET_397_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8846 7

Dapeng Zhang, 2016

3._EET_397_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8846 6

Dapeng Zhang, 2016

4._EET_397_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8846 5

Dapeng Zhang, 2016

5._EET_397_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8846 4

Dapeng Zhang, 2016

6._EET_397_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8846 1

Dapeng Zhang, 2016

7._EET_397_[ECU] GC-08-274-8-46

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

8._EET_397_[ECU] GC-08-274-8-46

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

9._EET_397_[ECU] GC-08-274-8-46

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

10._EET_397_[ECU] GC-08-274-8-46

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

11._EET_397_[ECU] GC-08-274-8-46

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

12._EET_397_[ECU] GC-08-274-8-46

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

13._EET_397_[ECU] GC-08-274-8-46

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

14._EET_397_[ECU] RUQ_759

98.7 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

15._EET_397_[ECU]

97.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F456 T11

Dapeng Zhang, 2016

16._EET_397_[ECU] RUQ_759

95.8 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.053 Nac
0.406 Sca
0.491

17._EET_397_[ECU] RUQ_759

95.8 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.053 Nac
0.406 Sca
0.491

18._EET_397_[ECU] RUQ_759

95.2 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._EET_397_[ECU] RUQ_759

50 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

20._EET_397_[ECU] EET_397_[ECU]_Fld#_117_Plt#_2

50 %
34 shared markers

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USDA-TARS, United States of America

Location: Field: 117, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25