SNP Profiles of EET 397 [ECU] View Data

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_Input profile	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
1._EET_397_[ECU]___	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
2._EET_397_[ECU]___	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
3._EET_397_[ECU]___	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
4._EET_397_[ECU]___	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
5._EET_397_[ECU]___	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
6._EET_397_[ECU]___	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
7._EET_397_[ECU]___	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
8._EET_397_[ECU]___	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
9._EET_397_[ECU]___	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
10._EET_397_[ECU]___	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
11._EET_397_[ECU]___	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
12._EET_397_[ECU]___	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
13._EET_397_[ECU]___	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
14._EET_397_[ECU]___	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
15._EET_397_[ECU]___	CC	GG	CC	TT	CC	CC	CT	GG	CT	CC	AT	GG	CC	AA
16._EET_397_[ECU]___	__	__	CC	__	__	__	__	GG	__	CC	__	GG	__	AA
17._EET_397_[ECU]___	__	__	CC	__	__	__	__	GG	__	CC	__	GG	__	AA
18._EET_397_[ECU]___	__	GG	CC	TT	__	__	__	GG	__	__	__	__	CC	AA
19._EET_397_[ECU]___	GG	GG	GG	AA	GG	CC	AG	CC	__	__	AT	GG	GG	AA
20._EET_397_[ECU]___	GG	GG	GG	AA	GG	CC	AG	CC	__	__	AT	GG	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
1._EET_397_[ECU]___	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
2._EET_397_[ECU]___	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
3._EET_397_[ECU]___	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
4._EET_397_[ECU]___	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
5._EET_397_[ECU]___	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
6._EET_397_[ECU]___	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
7._EET_397_[ECU]___	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
8._EET_397_[ECU]___	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
9._EET_397_[ECU]___	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
10._EET_397_[ECU]___	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
11._EET_397_[ECU]___	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
12._EET_397_[ECU]___	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
13._EET_397_[ECU]___	CT	AT	CG	CT	CT	CG	GG	AA	TT	CC	CG	GG	CC	AA
14._EET_397_[ECU]___	CT	AT	CG	CT	CT	CG	GG	AG	TT	CC	CG	GG	CC	AA
15._EET_397_[ECU]___	CT	AT	CG	CT	CT	CG	GG	AG	TT	CC	CG	GG	CC	AA
16._EET_397_[ECU]___	__	__	__	__	__	CG	GG	AG	__	CC	CG	__	__	AA
17._EET_397_[ECU]___	__	__	__	__	__	CG	GG	AG	__	CC	CG	__	__	AA
18._EET_397_[ECU]___	__	__	__	__	CT	CG	GG	__	TT	__	CG	GG	CC	AA
19._EET_397_[ECU]___	AG	AT	CG	AG	AG	CG	CC	__	AA	CC	CG	CC	__	AA
20._EET_397_[ECU]___	AG	AT	CG	AG	AG	CG	CC	__	AA	CC	CG	CC	__	AA

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AT	CT	AA	CC	CC	TT	GG	AC	AA	CG	X_X	X_X
1._EET_397_[ECU]___	AG	GG	AT	CT	AA	CC	CC	TT	GG	AC	AA	CG	X_X	X_X
2._EET_397_[ECU]___	AG	GG	AT	CT	AA	CC	CC	TT	GG	AC	AA	CG	X_X	X_X
3._EET_397_[ECU]___	AG	GG	AT	CT	AA	CC	CC	TT	GG	AC	AA	CG	X_X	X_X
4._EET_397_[ECU]___	AG	GG	AT	CT	AA	CC	CC	TT	GG	AC	AA	CG	X_X	X_X
5._EET_397_[ECU]___	AG	GG	AT	CT	AA	CC	CC	TT	GG	AC	AA	CG	X_X	X_X
6._EET_397_[ECU]___	AG	GG	AT	CT	AA	CC	CC	TT	GG	AC	AA	CG	X_X	X_X
7._EET_397_[ECU]___	AG	GG	AT	CT	AA	CC	CC	TT	GG	AC	AA	CG	X_X	X_X
8._EET_397_[ECU]___	AG	GG	AT	CT	AA	CC	CC	TT	GG	AC	AA	CG	X_X	X_X
9._EET_397_[ECU]___	AG	GG	AT	CT	AA	CC	CC	TT	GG	AC	AA	CG	X_X	X_X
10._EET_397_[ECU]___	AG	GG	AT	CT	AA	CC	CC	TT	GG	AC	AA	CG	X_X	X_X
11._EET_397_[ECU]___	AG	GG	AT	CT	AA	CC	CC	TT	GG	AC	AA	CG	X_X	X_X
12._EET_397_[ECU]___	AG	GG	AT	CT	__	CC	CC	TT	GG	AC	AA	CG	X_X	X_X
13._EET_397_[ECU]___	AG	GG	AT	CT	__	CC	CC	TT	GG	AC	AA	CG	X_X	X_X
14._EET_397_[ECU]___	AG	GG	AT	CT	AA	CC	CC	TT	GG	AC	AA	CG	X_X	X_X
15._EET_397_[ECU]___	AG	AG	AT	CT	AA	__	CC	TT	GG	AC	AA	CG	X_X	X_X
16._EET_397_[ECU]___	__	__	__	__	AA	__	__	__	__	AC	__	__	X_X	X_X
17._EET_397_[ECU]___	__	__	__	__	AA	__	__	__	__	AC	__	__	X_X	X_X
18._EET_397_[ECU]___	AG	__	TT	CT	AA	CC	CC	__	GG	CC	__	__	X_X	X_X
19._EET_397_[ECU]___	__	GG	AT	AG	AA	GG	CC	AA	CC	AC	AA	CG	X_X	X_X
20._EET_397_[ECU]___	__	GG	AT	AG	AA	GG	CC	AA	CC	AC	AA	CG	X_X	X_X

Input profile: EET_397_[ECU]

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Mars Center for Cocoa Science, Brazil

Location: 8846 5

Dapeng Zhang, 2016

1._EET_397_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8846 9

Dapeng Zhang, 2016

2._EET_397_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8846 7

Dapeng Zhang, 2016

3._EET_397_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8846 6

Dapeng Zhang, 2016

4._EET_397_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8846 4

Dapeng Zhang, 2016

5._EET_397_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8846 1

Dapeng Zhang, 2016

6._EET_397_[ECU] GC-08-274-8-46

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

7._EET_397_[ECU] GC-08-274-8-46

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

8._EET_397_[ECU] GC-08-274-8-46

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

9._EET_397_[ECU] GC-08-274-8-46

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

10._EET_397_[ECU] GC-08-274-8-46

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

11._EET_397_[ECU] GC-08-274-8-46

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

12._EET_397_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8846 2

Dapeng Zhang, 2016

13._EET_397_[ECU] GC-08-274-8-46

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

14._EET_397_[ECU] RUQ_759

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

15._EET_397_[ECU]

97.4 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F456 T11

Dapeng Zhang, 2016

16._EET_397_[ECU] RUQ_759

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.053 Nac
0.406 Sca
0.491

17._EET_397_[ECU] RUQ_759

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.053 Nac
0.406 Sca
0.491

18._EET_397_[ECU] RUQ_759

95.5 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._EET_397_[ECU] RUQ_759

51.4 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

20._EET_397_[ECU] EET_397_[ECU]_Fld#_117_Plt#_2

51.4 %
35 shared markers

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USDA-TARS, United States of America

Location: Field: 117, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25