SNP Profiles of JA 1 /19 [POU] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	CG	CT	CT	AA	CT	GT	CT	CT	AA	AG	CC	AG
1._EET_58_[ECU]___	CC	AG	CG	CT	CT	AA	CT	GT	CT	CT	AA	AG	CC	AG
2._EET_58_[ECU]___	CC	AG	CG	CT	CT	AA	CT	GT	CT	CT	AA	AG	CC	AG
3._EET_58_[ECU]___	CC	AG	CG	CT	CT	AA	CT	GT	CT	CT	AA	AG	CC	AG
4._EET_58_[ECU]___	CC	AG	CG	CT	CT	AA	CT	GT	CT	CT	AA	AG	CC	AG
5._EET_58_[ECU]___	CC	AG	CG	CT	CT	AA	CT	GT	CT	CT	AA	AG	CC	AG
6._EET_58_[ECU]___	CC	AG	CG	CT	CT	AA	CT	GT	CT	CT	AA	AG	CC	AG
7._EET_58_[ECU]___	CC	AG	CG	CT	CT	AA	CT	GT	CT	CT	AA	AG	CC	AG
8._EET_58_[ECU]___	CC	AG	CG	CT	CT	AA	CT	GT	CT	CT	AA	AG	CC	AG
9._EET_58_[ECU]___	CC	AG	CG	CT	CT	AA	CT	GT	CT	CT	AA	AG	CC	AG
10._EET_58_[ECU]___	CC	AG	CG	CT	CT	AA	CT	GT	CT	CT	AA	AG	CC	AG
11._EET_58_[ECU]___	CC	AG	CG	CT	CT	AA	CT	GT	CT	CT	AA	AG	CC	AG
12._EET_58_[ECU]___	CC	AG	CG	CT	CT	AA	CT	GT	CT	CT	AA	AG	CC	AG
13._EET_58_[ECU]___	CC	AG	CG	CT	CT	AA	CT	GT	CT	CT	AA	AG	CC	AG
14._EET_58_[ECU]___	CC	AG	CG	CT	CT	AA	CT	GT	CT	CT	AA	AG	CC	AG
15._EET_58_[ECU]___	CC	AG	CG	CT	CT	AA	CT	GT	CT	CT	AA	AG	CC	AG
16._EET_58_[ECU]___	CC	AG	CG	CT	CT	AA	CT	GT	CT	CT	AA	AG	CC	AG
17._EET_58_[ECU]___	CC	AG	CG	CT	CT	AA	CT	GT	CT	CT	AA	AG	CC	AG
18._EET_58_[ECU]___	__	__	CG	__	__	__	__	GT	__	CT	__	AG	__	AG
19._EET_58_[ECU]___	CT	AG	CG	CT	CT	AC	CT	GT	CT	CT	AT	AG	CC	AG
20._EET_58_[ECU]___	CT	AG	CG	CT	CT	AC	CT	GT	CT	CT	AT	AG	CC	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AT	GG	CT	CT	GG	GG	AG	TT	CC	CG	GG	CT	AC
1._EET_58_[ECU]___	TT	AT	GG	CT	CT	GG	GG	AG	TT	CC	CG	GG	CT	AC
2._EET_58_[ECU]___	TT	AT	GG	CT	CT	GG	GG	AG	TT	CC	CG	GG	CT	AC
3._EET_58_[ECU]___	TT	AT	GG	CT	CT	GG	GG	AG	TT	CC	CG	GG	CT	AC
4._EET_58_[ECU]___	TT	AT	GG	CT	CT	GG	GG	AG	TT	CC	CG	GG	CT	AC
5._EET_58_[ECU]___	TT	AT	GG	CT	CT	GG	GG	AG	TT	CC	CG	GG	CT	AC
6._EET_58_[ECU]___	TT	AT	GG	CT	CT	GG	GG	AG	TT	CC	CG	GG	CT	AC
7._EET_58_[ECU]___	TT	AT	GG	CT	CT	GG	GG	AG	TT	CC	CG	GG	CT	AC
8._EET_58_[ECU]___	TT	AT	GG	CT	CT	GG	GG	AG	TT	CC	CG	GG	CT	AC
9._EET_58_[ECU]___	TT	AT	GG	CT	CT	GG	GG	AG	TT	CC	CG	GG	CT	AC
10._EET_58_[ECU]___	TT	AT	GG	CT	CT	GG	GG	AG	TT	CC	CG	GG	CT	AC
11._EET_58_[ECU]___	TT	AT	GG	CT	CT	GG	GG	AG	TT	CC	CG	GG	CT	AC
12._EET_58_[ECU]___	TT	AT	GG	CT	CT	GG	GG	AG	TT	CC	CG	GG	CT	AC
13._EET_58_[ECU]___	TT	AT	GG	CT	CT	GG	GG	AG	TT	CC	CG	GG	CT	AC
14._EET_58_[ECU]___	TT	AT	GG	CT	CT	GG	GG	AG	TT	CC	CG	GG	CT	AC
15._EET_58_[ECU]___	TT	AT	GG	CT	CT	GG	GG	AG	TT	CC	CG	GG	CT	AC
16._EET_58_[ECU]___	TT	AT	GG	CT	CT	GG	GG	AG	TT	CC	CG	GG	CT	AC
17._EET_58_[ECU]___	TT	AT	GG	CT	CT	GG	GG	AG	TT	CC	CG	GG	CT	AC
18._EET_58_[ECU]___	__	__	__	__	__	GG	GG	AG	__	CC	CG	__	__	AC
19._EET_58_[ECU]___	TT	AT	GG	CT	CT	GG	GG	AG	TT	CC	CG	GT	CT	AC
20._EET_58_[ECU]___	TT	AT	GG	CT	CT	GG	GG	AG	CT	CC	CG	GT	CT	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	GG	AG	AT	CC	AG	CC	CC	CT	GT	CC	AT	CG	X_X	X_X
1._EET_58_[ECU]___	GG	AG	AT	CC	AG	CC	CC	CT	GT	CC	AT	CG	X_X	X_X
2._EET_58_[ECU]___	GG	AG	AT	CC	AG	CC	CC	CT	GT	CC	AT	CG	X_X	X_X
3._EET_58_[ECU]___	GG	AG	AT	CC	AG	CC	CC	CT	GT	CC	AT	CG	X_X	X_X
4._EET_58_[ECU]___	GG	AG	AT	CC	AG	CC	CC	CT	GT	CC	AT	CG	X_X	X_X
5._EET_58_[ECU]___	GG	AG	AT	CC	AG	CC	CC	CT	GT	CC	AT	CG	X_X	X_X
6._EET_58_[ECU]___	GG	AG	AT	CC	AG	CC	CC	CT	GT	CC	AT	CG	X_X	X_X
7._EET_58_[ECU]___	GG	AG	AT	CC	AG	CC	CC	CT	GT	CC	AT	CG	X_X	X_X
8._EET_58_[ECU]___	GG	AG	AT	CC	AG	CC	CC	CT	GT	CC	AT	CG	X_X	X_X
9._EET_58_[ECU]___	GG	AG	AT	CC	AG	CC	CC	CT	GT	CC	AT	CG	X_X	X_X
10._EET_58_[ECU]___	GG	AG	AT	CC	AG	CC	CC	CT	GT	CC	AT	CG	X_X	X_X
11._EET_58_[ECU]___	GG	AG	AT	CC	AG	CC	CC	CT	GT	CC	AT	CG	X_X	X_X
12._EET_58_[ECU]___	GG	AG	AT	CC	AG	CC	CC	CT	GT	CC	AT	CG	X_X	X_X
13._EET_58_[ECU]___	GG	AG	AT	CC	AG	CC	CC	CT	GT	CC	AT	CG	X_X	X_X
14._EET_58_[ECU]___	GG	AG	AT	CC	AG	CC	CC	CT	GT	CC	AT	CG	X_X	X_X
15._EET_58_[ECU]___	GG	AG	AT	CC	AG	CC	CC	CT	GT	CC	AT	CG	X_X	X_X
16._EET_58_[ECU]___	GG	AG	AT	CC	AG	CC	CC	CT	GT	CC	AT	CG	X_X	X_X
17._EET_58_[ECU]___	GG	AG	AT	CC	AG	CC	CC	CT	GT	CC	AT	CG	X_X	X_X
18._EET_58_[ECU]___	__	__	__	__	AA	__	__	__	__	CC	__	__	X_X	X_X
19._EET_58_[ECU]___	AG	AG	AT	CC	AA	CG	CC	CT	GT	CC	AT	CG	X_X	X_X
20._EET_58_[ECU]___	AG	GG	AT	CC	AA	CG	CC	CT	GT	CC	AT	CG	X_X	X_X

Input profile: EET_58_[ECU]

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Mars Center for Cocoa Science, Brazil

Location: 8859 7

Dapeng Zhang, 2016

1._EET_58_[ECU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8859 10

Dapeng Zhang, 2016

2._EET_58_[ECU] GC-08-287-8-59

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

3._EET_58_[ECU] GC-08-287-8-59

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

4._EET_58_[ECU] GC-08-287-8-59

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

5._EET_58_[ECU] GC-08-287-8-59

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

6._EET_58_[ECU] GC-08-287-8-59

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

7._EET_58_[ECU] GC-08-287-8-59

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

8._EET_58_[ECU] GC-08-287-8-59

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

9._EET_58_[ECU] GC-08-287-8-59

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

10._EET_58_[ECU] GC-08-287-8-59

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

11._EET_58_[ECU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8859 1

Dapeng Zhang, 2016

12._EET_58_[ECU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8859 3

Dapeng Zhang, 2016

13._EET_58_[ECU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8859 4

Dapeng Zhang, 2016

14._EET_58_[ECU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8859 5

Dapeng Zhang, 2016

15._EET_58_[ECU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8859 6

Dapeng Zhang, 2016

16._EET_58_[ECU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8859 8

Dapeng Zhang, 2016

17._EET_58_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8859 9

Dapeng Zhang, 2016

18._EET_58_[ECU] RUQ_383

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.366 Nac
0.617

19._EET_58_[ECU]

91.3 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F465 T10

Dapeng Zhang, 2016

20._EET_58_[ECU] RUQ_383

88.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25