SNP Profiles of EQX 69 [EQX]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAACGTTTTCCTTTTCTCTAAGGCTAG
1._EQX_69_[EQX]___
CTAACGTTTTCCTTTTCTCTAAGGCTAG
2._EQX_69_[EQX]___
CTAACGTTTTCCTTTTCTCTAAGGCTAG
3._EQX_69_[EQX]___
CTAACGTTTTCCTTTTCTCTAAGGCTAG
4._EQX_69_[EQX]___
CTAACGTTTTCCTTTTCTCTAAGGCTAG
5._EQX_69_[EQX]___
CTAACGTTTTCCTTTTCTCTAAGGCTAG
6._EQX_69_[EQX]___
CTAACGTTTTCCTTTTCTCTAAGGCTAG
7._EQX_69_[EQX]___
CTAACGTTTTCCTTTTCTCTAAGGCTAG
8._EQX_69_[EQX]___
CTAACGTTTTCCTTTTCTCTAAGGCTAG
9._EQX_69_[EQX]___
CTAACGTTTTCCTTTTCTCTAAGGCTAG
10._EQX_69_[EQX]___
CTAACGTTTTCCTTTTCTCTAAGGCTAG
11._EQX_69_[EQX]___
CTAACGTTTTCCTTTTCTCTAAGGCTAG
12._EQX_69_[EQX]___
CTAACGTTTTCCTTTTCTCTAAGGCTAG
13._EQX_69_[EQX]___
CTAACGTTTTCCTTTTCTCTAAGGCTAG
14._EQX_69_[EQX]___
CTAACGTTTTCCTTTTCTCTAAGGCTAG
15._EQX_69_[EQX]___
CTAACGTTTTCCTTTTCTCTAAGGCTAG
16._EQX_69_[EQX]___
CTAACGTTTTCCTTTTCTCTAAGGCTAG
17._EQX_69_[EQX]___
CTAACGTTTTCCTTTTCTCTAAGGCTAG
18._EQX_69_[EQX]___
__AACGTT______TT________CTAG
19._EQX_69_[EQX]___
____CG________TT__CT__GG__AG
20._EQX_69_[EQX]___
____CG________TT__CT__GG__AG
21._EQX_69_[EQX]___
CTAGCGTTTTCCTTTTCTCTAAGGCTAG
22._EQX_69_[EQX]___
AGAACGAAAACCAAAA____AAGGAGAG
23._EQX_69_[EQX]___
AGAACGAAAACCAAAA____AAGGAGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTATGGCTCCCGGGAACTCCCGGTTTCC
1._EQX_69_[EQX]___
TTATGGCTCCCGGGAACTCCCGGTTTCC
2._EQX_69_[EQX]___
TTATGGCTCCCGGGAACTCCCGGTTTCC
3._EQX_69_[EQX]___
TTATGGCTCCCGGGAACTCCCGGTTTCC
4._EQX_69_[EQX]___
TTATGGCTCCCGGGAACTCCCGGTTTCC
5._EQX_69_[EQX]___
TTATGGCTCCCGGGAACTCCCGGTTTCC
6._EQX_69_[EQX]___
TTATGGCTCCCGGGAACTCCCGGTTTCC
7._EQX_69_[EQX]___
TTATGGCTCCCGGGAACTCCCGGTTTCC
8._EQX_69_[EQX]___
TTATGGCTCCCGGGAACTCCCGGTTTCC
9._EQX_69_[EQX]___
TTATGGCTCCCGGGAACTCCCGGTTTCC
10._EQX_69_[EQX]___
TTATGGCTCCCGGGAACTCCCGGTTTCC
11._EQX_69_[EQX]___
TTATGGCTCCCGGGAACTCCCGGTTTCC
12._EQX_69_[EQX]___
TTATGGCTCCCGGGAACTCCCGGTTTCC
13._EQX_69_[EQX]___
TTATGGCTCCCGGGAACTCCCGGTTTCC
14._EQX_69_[EQX]___
TTATGGCTCCCGGGAACTCCCGGTTTCC
15._EQX_69_[EQX]___
TTATGGCTCCCGGGAACTCCCGGTTTCC
16._EQX_69_[EQX]___
TTATGGCTCCCGGGAACTCCCGGTTTCC
17._EQX_69_[EQX]___
TTATGGCTCCCGGGAACTCCCGGTTTCC
18._EQX_69_[EQX]___
________CCCGGG__CTCCCGGT__CC
19._EQX_69_[EQX]___
__________CGGGAA__CCCG____CC
20._EQX_69_[EQX]___
__________CGGGAA__CCCG____CC
21._EQX_69_[EQX]___
TTATGGCTCCCGGGAACTCCCGGTCTCC
22._EQX_69_[EQX]___
AAATGGAGGGCGCC__AGCCCGAC__CC
23._EQX_69_[EQX]___
AAATGGAGGGCGCC__AGCCCGAC__CC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGAACTAACCAACTGGCCATGGX_XX_X
1._EQX_69_[EQX]___
AGGGAACTAACCAACTGGCCATGGX_XX_X
2._EQX_69_[EQX]___
AGGGAACTAACCAACTGGCCATGGX_XX_X
3._EQX_69_[EQX]___
AGGGAACTAACCAACTGGCCATGGX_XX_X
4._EQX_69_[EQX]___
AGGGAACTAACCAACTGGCCATGGX_XX_X
5._EQX_69_[EQX]___
AGGGAACTAACCAACTGGCCATGGX_XX_X
6._EQX_69_[EQX]___
AGGGAACTAACCAACTGGCCATGGX_XX_X
7._EQX_69_[EQX]___
AGGGAACTAACCAACTGGCCATGGX_XX_X
8._EQX_69_[EQX]___
AGGGAACTAACCAACTGGCCATGGX_XX_X
9._EQX_69_[EQX]___
AGGGAACTAACCAACTGGCCATGGX_XX_X
10._EQX_69_[EQX]___
AGGGAACTAACCAACTGGCCATGGX_XX_X
11._EQX_69_[EQX]___
AGGGAACTAACCAACTGGCCATGGX_XX_X
12._EQX_69_[EQX]___
AGGGAACTAACCAACTGGCCATGGX_XX_X
13._EQX_69_[EQX]___
AGGGAACTAACCAACTGGCCATGGX_XX_X
14._EQX_69_[EQX]___
__GGAACTAACCAACTGGCCATGGX_XX_X
15._EQX_69_[EQX]___
__GGAACTAACCAACTGGCCATGGX_XX_X
16._EQX_69_[EQX]___
AGGGAACTAACC__CTGG__ATGGX_XX_X
17._EQX_69_[EQX]___
AGGGAACTAACC__CTGG__ATGGX_XX_X
18._EQX_69_[EQX]___
AG__AACTAACCAACTGGCC____X_XX_X
19._EQX_69_[EQX]___
________AA________CC____X_XX_X
20._EQX_69_[EQX]___
________AA________CC____X_XX_X
21._EQX_69_[EQX]___
AGAGAACTAACCAACTGGCCATGGX_XX_X
22._EQX_69_[EQX]___
__GGAAAGAAGGAAAGCCCCATGGX_XX_X
23._EQX_69_[EQX]___
__GGAAAGAAGGAAAGCCCCATGGX_XX_X

Input profile: EQX_69_[EQX]

 
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Mars Center for Cocoa Science, Brazil
Location: 1106 12
 Dapeng Zhang, 2016

1._EQX_69_[EQX] GC-01-008-1-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

2._EQX_69_[EQX] GC-01-008-1-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

3._EQX_69_[EQX] GC-01-008-1-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

4._EQX_69_[EQX] GC-01-008-1-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

5._EQX_69_[EQX] GC-01-008-1-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._EQX_69_[EQX] GC-01-008-1-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._EQX_69_[EQX] GC-01-008-1-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._EQX_69_[EQX]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1106 1
 Dapeng Zhang, 2016

9._EQX_69_[EQX]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1106 2
 Dapeng Zhang, 2016

10._EQX_69_[EQX]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1106 3
 Dapeng Zhang, 2016

11._EQX_69_[EQX]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1106 10 > F
 Dapeng Zhang, 2016

12._EQX_69_[EQX]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1106 14 > F
 Dapeng Zhang, 2016

13._EQX_69_[EQX]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1106 7 > FP
 Dapeng Zhang, 2016

14._EQX_69_[EQX] GC-01-008-1-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

15._EQX_69_[EQX]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1106 16
 Dapeng Zhang, 2016

16._EQX_69_[EQX]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1106 9 > FP
 Dapeng Zhang, 2016

17._EQX_69_[EQX] GC-01-008-1-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

18._EQX_69_[EQX] RUQ_100

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._EQX_69_[EQX] RUQ_100

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Ame
0.297 Cri
0.093 IMC
0.468 Sca
0.116

20._EQX_69_[EQX] RUQ_100B

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._EQX_69_[EQX] RUQ_100

96.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._EQX_69_[EQX] GC-01-8-1-8

54.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 6, Tree: 10 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

23._EQX_69_[EQX] RUQ_100

54.3 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25