SNP Profiles of EQX 69 [EQX]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAACGTTTTCCTTTTCTCTAAGGCTAG
1._EQX_69_[EQX]
CTAACGTTTTCCTTTTCTCTAAGGCTAG
2._GC-01-008-1-08
CTAACGTTTTCCTTTTCTCTAAGGCTAG
3._GC-01-008-1-08
CTAACGTTTTCCTTTTCTCTAAGGCTAG
4._GC-01-008-1-08
CTAACGTTTTCCTTTTCTCTAAGGCTAG
5._GC-01-008-1-08
CTAACGTTTTCCTTTTCTCTAAGGCTAG
6._GC-01-008-1-08
CTAACGTTTTCCTTTTCTCTAAGGCTAG
7._GC-01-008-1-08
CTAACGTTTTCCTTTTCTCTAAGGCTAG
8._GC-01-008-1-08
CTAACGTTTTCCTTTTCTCTAAGGCTAG
9._GC-01-008-1-08
CTAACGTTTTCCTTTTCTCTAAGGCTAG
10._EQX_69_[EQX]
CTAACGTTTTCCTTTTCTCTAAGGCTAG
11._EQX_69_[EQX]
CTAACGTTTTCCTTTTCTCTAAGGCTAG
12._EQX_69_[EQX]
CTAACGTTTTCCTTTTCTCTAAGGCTAG
13._EQX_69_[EQX]
CTAACGTTTTCCTTTTCTCTAAGGCTAG
14._EQX_69_[EQX]
CTAACGTTTTCCTTTTCTCTAAGGCTAG
15._EQX_69_[EQX]
CTAACGTTTTCCTTTTCTCTAAGGCTAG
16._GC-01-008-1-08
CTAACGTTTTCCTTTTCTCTAAGGCTAG
17._EQX_69_[EQX]
CTAACGTTTTCCTTTTCTCTAAGGCTAG
18._RUQ_100
__AACGTT______TT________CTAG
19._RUQ_100
____CG________TT__CT__GG__AG
20._RUQ_100B
____CG________TT__CT__GG__AG
21._RUQ_100
CTAGCGTTTTCCTTTTCTCTAAGGCTAG
22._GC-01-8-1-8
AGAACGAAAACCAAAA____AAGGAGAG
23._RUQ_100
AGAACGAAAACCAAAA____AAGGAGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTATGGCTCCCGGGAACTCCCGGTTTCC
1._EQX_69_[EQX]
TTATGGCTCCCGGGAACTCCCGGTTTCC
2._GC-01-008-1-08
TTATGGCTCCCGGGAACTCCCGGTTTCC
3._GC-01-008-1-08
TTATGGCTCCCGGGAACTCCCGGTTTCC
4._GC-01-008-1-08
TTATGGCTCCCGGGAACTCCCGGTTTCC
5._GC-01-008-1-08
TTATGGCTCCCGGGAACTCCCGGTTTCC
6._GC-01-008-1-08
TTATGGCTCCCGGGAACTCCCGGTTTCC
7._GC-01-008-1-08
TTATGGCTCCCGGGAACTCCCGGTTTCC
8._GC-01-008-1-08
TTATGGCTCCCGGGAACTCCCGGTTTCC
9._GC-01-008-1-08
TTATGGCTCCCGGGAACTCCCGGTTTCC
10._EQX_69_[EQX]
TTATGGCTCCCGGGAACTCCCGGTTTCC
11._EQX_69_[EQX]
TTATGGCTCCCGGGAACTCCCGGTTTCC
12._EQX_69_[EQX]
TTATGGCTCCCGGGAACTCCCGGTTTCC
13._EQX_69_[EQX]
TTATGGCTCCCGGGAACTCCCGGTTTCC
14._EQX_69_[EQX]
TTATGGCTCCCGGGAACTCCCGGTTTCC
15._EQX_69_[EQX]
TTATGGCTCCCGGGAACTCCCGGTTTCC
16._GC-01-008-1-08
TTATGGCTCCCGGGAACTCCCGGTTTCC
17._EQX_69_[EQX]
TTATGGCTCCCGGGAACTCCCGGTTTCC
18._RUQ_100
________CCCGGG__CTCCCGGT__CC
19._RUQ_100
__________CGGGAA__CCCG____CC
20._RUQ_100B
__________CGGGAA__CCCG____CC
21._RUQ_100
TTATGGCTCCCGGGAACTCCCGGTCTCC
22._GC-01-8-1-8
AAATGGAGGGCGCC__AGCCCGAC__CC
23._RUQ_100
AAATGGAGGGCGCC__AGCCCGAC__CC
 29 30 31 32 33 34 35 36 37 38     
_Input profile
AGGGAACTAACCCTGGATGGX_XX_XX_XX_X
1._EQX_69_[EQX]
AGGGAACTAACCCTGGATGGX_XX_XX_XX_X
2._GC-01-008-1-08
AGGGAACTAACCCTGGATGGX_XX_XX_XX_X
3._GC-01-008-1-08
AGGGAACTAACCCTGGATGGX_XX_XX_XX_X
4._GC-01-008-1-08
AGGGAACTAACCCTGGATGGX_XX_XX_XX_X
5._GC-01-008-1-08
AGGGAACTAACCCTGGATGGX_XX_XX_XX_X
6._GC-01-008-1-08
AGGGAACTAACCCTGGATGGX_XX_XX_XX_X
7._GC-01-008-1-08
AGGGAACTAACCCTGGATGGX_XX_XX_XX_X
8._GC-01-008-1-08
AGGGAACTAACCCTGGATGGX_XX_XX_XX_X
9._GC-01-008-1-08
AGGGAACTAACCCTGGATGGX_XX_XX_XX_X
10._EQX_69_[EQX]
AGGGAACTAACCCTGGATGGX_XX_XX_XX_X
11._EQX_69_[EQX]
AGGGAACTAACCCTGGATGGX_XX_XX_XX_X
12._EQX_69_[EQX]
AGGGAACTAACCCTGGATGGX_XX_XX_XX_X
13._EQX_69_[EQX]
AGGGAACTAACCCTGGATGGX_XX_XX_XX_X
14._EQX_69_[EQX]
AGGGAACTAACCCTGGATGGX_XX_XX_XX_X
15._EQX_69_[EQX]
AGGGAACTAACCCTGGATGGX_XX_XX_XX_X
16._GC-01-008-1-08
__GGAACTAACCCTGGATGGX_XX_XX_XX_X
17._EQX_69_[EQX]
__GGAACTAACCCTGGATGGX_XX_XX_XX_X
18._RUQ_100
AG__AACTAACCCTGG____X_XX_XX_XX_X
19._RUQ_100
________AA__________X_XX_XX_XX_X
20._RUQ_100B
________AA__________X_XX_XX_XX_X
21._RUQ_100
AGAGAACTAACCCTGGATGGX_XX_XX_XX_X
22._GC-01-8-1-8
__GGAAAGAAGGAGCCATGGX_XX_XX_XX_X
23._RUQ_100
__GGAAAGAAGGAGCCATGGX_XX_XX_XX_X

Input profile: EQX_69_[EQX]

 
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Mars Center for Cocoa Science, Brazil
Location: 1106 9 > FP
 Dapeng Zhang, 2016

1._EQX_69_[EQX]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1106 7 > FP
 Dapeng Zhang, 2016

2._EQX_69_[EQX] GC-01-008-1-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

3._EQX_69_[EQX] GC-01-008-1-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

4._EQX_69_[EQX] GC-01-008-1-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

5._EQX_69_[EQX] GC-01-008-1-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

6._EQX_69_[EQX] GC-01-008-1-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

7._EQX_69_[EQX] GC-01-008-1-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._EQX_69_[EQX] GC-01-008-1-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._EQX_69_[EQX] GC-01-008-1-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._EQX_69_[EQX]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1106 1
 Dapeng Zhang, 2016

11._EQX_69_[EQX]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1106 2
 Dapeng Zhang, 2016

12._EQX_69_[EQX]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1106 3
 Dapeng Zhang, 2016

13._EQX_69_[EQX]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1106 12
 Dapeng Zhang, 2016

14._EQX_69_[EQX]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1106 10 > F
 Dapeng Zhang, 2016

15._EQX_69_[EQX]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1106 14 > F
 Dapeng Zhang, 2016

16._EQX_69_[EQX] GC-01-008-1-08

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

17._EQX_69_[EQX]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1106 16
 Dapeng Zhang, 2016

18._EQX_69_[EQX] RUQ_100

identical
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._EQX_69_[EQX] RUQ_100

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Ame
0.297 Cri
0.093 IMC
0.468 Sca
0.116

20._EQX_69_[EQX] RUQ_100B

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._EQX_69_[EQX] RUQ_100

96.1 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._EQX_69_[EQX] GC-01-8-1-8

51.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 6, Tree: 10 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

23._EQX_69_[EQX] RUQ_100

51.5 %
33 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP151
36TcSNP150 37TcSNP32 38TcSNP25