SNP Profiles of GU 123 /V   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
1._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
2._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
3._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
4._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
5._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
6._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
7._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
8._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
9._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
10._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
11._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
12._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
13._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
14._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
15._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
16._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
17._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
18._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
19._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
20._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
21._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
22._GU_133_/C___
__GGCGCC__________CCGG______
23._GU_133_/C___
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
24._GU_133_/C___
____CG______CC__GG__GG______
25._GU_133_/C___
____CG____________CC__CC____
26._GU_133_/C___
GGGGCGGGAA____AAGGGGGGGGAAGG
27._GU_133_/C___
GGGGCGGGAA____AAGGGGGGGGAAGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCGGGGGGCCACCCGGCCAAGGGGAACC
1._GU_133_/C___
CCGGGGGGCCACCCGGCCAAGGGGAACC
2._GU_133_/C___
CCGGGGGGCCACCCGGCCAAGGGGAACC
3._GU_133_/C___
CCGGGGGGCCACCCGGCCAAGGGGAACC
4._GU_133_/C___
CCGGGGGGCCACCCGGCCAAGGGGAACC
5._GU_133_/C___
CCGGGGGGCCACCCGGCCAAGGGGAACC
6._GU_133_/C___
CCGGGGGGCCACCCGGCCAAGGGGAACC
7._GU_133_/C___
CCGGGGGGCCACCCGGCCAAGGGGAACC
8._GU_133_/C___
CCGGGGGGCCACCCGGCCAAGGGGAACC
9._GU_133_/C___
CCGGGGGGCCACCCGGCCAAGGGGAACC
10._GU_133_/C___
CCGGGGGGCCACCCGGCCAAGGGGAACC
11._GU_133_/C___
CCGGGGGGCCACCCGGCCAAGGGGAACC
12._GU_133_/C___
CCGGGGGGCCACCCGGCCAAGGGGAACC
13._GU_133_/C___
CCGGGGGGCCACCCGGCCAAGGGGAACC
14._GU_133_/C___
CCGGGGGGCCACCCGGCCAAGGGGAACC
15._GU_133_/C___
CCGGGGGGCCACCCGGCCAAGGGGAACC
16._GU_133_/C___
CCGGGGGGCCACCCGGCCAAGGGGAACC
17._GU_133_/C___
CCGGGGGGCCACCCGGCCAAGGGGAACC
18._GU_133_/C___
CCGGGGGGCCACCCGGCCAAGGGGAACC
19._GU_133_/C___
CCGGGGGGCCACCCGG__AAGGGGAACC
20._GU_133_/C___
CCGGGGGGCCACCCGGCCAAGGGGAACC
21._GU_133_/C___
CCGGGGGGCCACCCGG__AAGGGGAACC
22._GU_133_/C___
__GGGG__CCACCCGGCCAAGG__AACC
23._GU_133_/C___
CCGGGGAACCACCCGGCCAAGGGGAACC
24._GU_133_/C___
__GGGGAA__ACCC____AA________
25._GU_133_/C___
__CC______ACCC__________AA__
26._GU_133_/C___
GGCCCC__GGACCCCC__AA__GGAAGG
27._GU_133_/C___
GGCCCC__GGACCCCC__AA__GGAAGG
 29 30 31 32 33 34 35        
_Input profile
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
1._GU_133_/C___
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
2._GU_133_/C___
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
3._GU_133_/C___
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
4._GU_133_/C___
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
5._GU_133_/C___
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
6._GU_133_/C___
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
7._GU_133_/C___
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
8._GU_133_/C___
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
9._GU_133_/C___
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
10._GU_133_/C___
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
11._GU_133_/C___
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
12._GU_133_/C___
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
13._GU_133_/C___
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
14._GU_133_/C___
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
15._GU_133_/C___
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
16._GU_133_/C___
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
17._GU_133_/C___
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
18._GU_133_/C___
CC__TTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
19._GU_133_/C___
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
20._GU_133_/C___
CC__TTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
21._GU_133_/C___
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
22._GU_133_/C___
CCAATTTTAA____X_XX_XX_XX_XX_XX_XX_X
23._GU_133_/C___
CCAATTGTAAATGGX_XX_XX_XX_XX_XX_XX_X
24._GU_133_/C___
________AA____X_XX_XX_XX_XX_XX_XX_X
25._GU_133_/C___
GGAATT__AA____X_XX_XX_XX_XX_XX_XX_X
26._GU_133_/C___
GGAAAAAAAAATGGX_XX_XX_XX_XX_XX_XX_X
27._GU_133_/C___
GGAAAAAAAAATGGX_XX_XX_XX_XX_XX_XX_X

Input profile: GU_133_/C

 
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Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

1._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

2._GU_133_/C GC-08-164-4-07

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._GU_133_/C GC-08-164-4-07

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

4._GU_133_/C GC-01-116-6-13

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

5._GU_133_/C GC-01-116-6-13

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

6._GU_133_/C GC-01-116-6-13

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

7._GU_133_/C GC-01-116-6-13

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._GU_133_/C GC-01-116-6-13

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016

10._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

11._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

12._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

13._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

14._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

15._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

16._GU_133_/C GC-08-164-4-07

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

17._GU_133_/C GC-08-164-4-07

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

18._GU_133_/C GC-08-164-4-07

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

19._GU_133_/C GC-08-164-4-07

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._GU_133_/C

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

21._GU_133_/C

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

22._GU_133_/C RUQ_190

identical
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._GU_133_/C RUQ_190

95.7 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._GU_133_/C RUQ_190

90.9 %
11 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
GU
0.998

25._GU_133_/C RUQ_190

81.8 %
11 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

26._GU_133_/C GC-01-116-6-13

53.3 %
30 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._GU_133_/C MITC-000670

53.3 %
30 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1270
6TcSNP1165 7TcSNP1144 8TcSNP1075 9TcSNP1062 10TcSNP1060
11TcSNP998 12TcSNP994 13TcSNP953 14TcSNP929 15TcSNP917
16TcSNP872 17TcSNP723 18TcSNP645 19TcSNP619 20TcSNP591
21TcSNP577 22TcSNP560 23TcSNP534 24TcSNP529 25TcSNP469
26TcSNP429 27TcSNP372 28TcSNP242 29TcSNP226 30TcSNP193
31TcSNP151 32TcSNP150 33TcSNP144 34TcSNP32 35TcSNP25