SNP Profiles of GU 123 /V   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
1._GU_133_/C___
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
2._GU_133_/C___
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
3._GU_133_/C___
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
4._GU_133_/C___
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
5._GU_133_/C___
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
6._GU_133_/C___
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
7._GU_133_/C___
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
8._GU_133_/C___
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
9._GU_133_/C___
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
10._GU_133_/C___
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
11._GU_133_/C___
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
12._GU_133_/C___
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
13._GU_133_/C___
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
14._GU_133_/C___
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
15._GU_133_/C___
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
16._GU_133_/C___
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
17._GU_133_/C___
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
18._GU_133_/C___
CCGGCGCCTTTT__CCCCAAGGCCGGCC
19._GU_133_/C___
CCGGCGCCTTTT__CCCCAAGGCCGGCC
20._GU_133_/C___
CCGGCGCC__TT__CCCCAAGGCCGGCC
21._GU_133_/C___
CCGGCGCC__TT__CCCCAAGGCCGGCC
22._GU_133_/C___
__GGCGCC____TT________CCGG__
23._GU_133_/C___
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
24._GU_133_/C___
____CG______TT__CC__GG__GG__
25._GU_133_/C___
____CG________________CC__CC
26._GU_133_/C___
GGGGCGGGAAAAAA____AAGGGGGGGG
27._GU_133_/C___
GGGGCGGGAAAAAA____AAGGGGGGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCCCCGGGGGGCCACCCGGCCAAGG
1._GU_133_/C___
AAGGCCCCGGGGGGCCACCCGGCCAAGG
2._GU_133_/C___
AAGGCCCCGGGGGGCCACCCGGCCAAGG
3._GU_133_/C___
AAGGCCCCGGGGGGCCACCCGGCCAAGG
4._GU_133_/C___
AAGGCCCCGGGGGGCCACCCGGCCAAGG
5._GU_133_/C___
AAGGCCCCGGGGGGCCACCCGGCCAAGG
6._GU_133_/C___
AAGGCCCCGGGGGGCCACCCGGCCAAGG
7._GU_133_/C___
AAGGCCCCGGGGGGCCACCCGGCCAAGG
8._GU_133_/C___
AAGGCCCCGGGGGGCCACCCGGCCAAGG
9._GU_133_/C___
AAGGCCCCGGGGGGCCACCCGGCCAAGG
10._GU_133_/C___
AAGGCCCCGGGGGGCCACCCGGCCAAGG
11._GU_133_/C___
AAGGCCCCGGGGGGCCACCCGGCCAAGG
12._GU_133_/C___
AAGGCCCCGGGGGGCCACCCGGCCAAGG
13._GU_133_/C___
AAGGCCCCGGGGGGCCACCCGGCCAAGG
14._GU_133_/C___
AAGGCCCCGGGGGGCCACCCGGCCAAGG
15._GU_133_/C___
AAGGCCCCGGGGGGCCACCCGG__AAGG
16._GU_133_/C___
AAGGCCCCGGGGGGCCACCCGGCCAAGG
17._GU_133_/C___
AAGGCCCCGGGGGGCCACCCGG__AAGG
18._GU_133_/C___
AAGGCCCCGGGGGGCCACCCGGCCAAGG
19._GU_133_/C___
AAGGCCCCGGGGGGCCACCCGGCCAAGG
20._GU_133_/C___
AAGGCC__GGGGGGCCACCCGGCCAAGG
21._GU_133_/C___
AAGGCC__GGGGGGCCACCCGGCCAAGG
22._GU_133_/C___
______CCGGGG__CCACCCGGCCAAGG
23._GU_133_/C___
AAGGCCCCGGGGAACCACCCGGCCAAGG
24._GU_133_/C___
________GGGGAA__ACCC____AA__
25._GU_133_/C___
______CCCC______ACCC________
26._GU_133_/C___
AAGGGGGGCCCC__GGACCCCC__AA__
27._GU_133_/C___
AAGGGGGGCCCC__GGACCCCC__AA__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
1._GU_133_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
2._GU_133_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
3._GU_133_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
4._GU_133_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
5._GU_133_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
6._GU_133_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
7._GU_133_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
8._GU_133_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
9._GU_133_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
10._GU_133_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
11._GU_133_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
12._GU_133_/C___
GGAACC__CCAATTTTAAATGGX_XX_XX_X
13._GU_133_/C___
GGAACC__CCAATTTTAAATGGX_XX_XX_X
14._GU_133_/C___
GGAACCGGCC__TTTTAAATGGX_XX_XX_X
15._GU_133_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
16._GU_133_/C___
GGAACCGGCC__TTTTAAATGGX_XX_XX_X
17._GU_133_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
18._GU_133_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
19._GU_133_/C___
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
20._GU_133_/C___
GGAACC__CCAATTTTAAATGGX_XX_XX_X
21._GU_133_/C___
GGAACC__CCAATTTTAAATGGX_XX_XX_X
22._GU_133_/C___
__AACCGGCCAATTTTAA____X_XX_XX_X
23._GU_133_/C___
GGAACCGGCCAATTGTAAATGGX_XX_XX_X
24._GU_133_/C___
______GG________AA____X_XX_XX_X
25._GU_133_/C___
__AA__GGGGAATT__AA____X_XX_XX_X
26._GU_133_/C___
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X
27._GU_133_/C___
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X

Input profile: GU_133_/C

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

1._GU_133_/C GC-08-164-4-07

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._GU_133_/C GC-08-164-4-07

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._GU_133_/C GC-01-116-6-13

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

4._GU_133_/C GC-01-116-6-13

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

5._GU_133_/C GC-01-116-6-13

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._GU_133_/C

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016

7._GU_133_/C

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

8._GU_133_/C

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

9._GU_133_/C

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

10._GU_133_/C

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

11._GU_133_/C GC-08-164-4-07

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

12._GU_133_/C

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

13._GU_133_/C GC-01-116-6-13

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._GU_133_/C GC-08-164-4-07

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

15._GU_133_/C GC-08-164-4-07

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

16._GU_133_/C

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

17._GU_133_/C

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

18._GU_133_/C

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

19._GU_133_/C GC-08-164-4-07

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

20._GU_133_/C GC-01-116-6-13

identical
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

21._GU_133_/C

identical
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

22._GU_133_/C RUQ_190

identical
24 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._GU_133_/C RUQ_190

96.2 %
39 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._GU_133_/C RUQ_190

92.3 %
13 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
GU
0.998

25._GU_133_/C RUQ_190

84.6 %
13 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

26._GU_133_/C GC-01-116-6-13

50 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._GU_133_/C MITC-000670

50 %
34 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25