SNP Profiles of NACIONAL View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AA	GG	CT	TT	CC	TT	CC	TT	AA	AA	CC	GG	TT
1._GU_168_/H___	TT	AA	GG	CT	TT	CC	TT	CC	TT	AA	AA	CC	GG	TT
2._GU_168_/H___	__	AG	GG	CC	__	__	TT	__	__	__	__	CC	AG	__
3._GU_168_/H___	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
4._GU_168_/H___	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
5._GU_168_/H___	CC	AG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AG	CT
6._GU_168_/H___	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
7._GU_168_/H___	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
8._GU_168_/H___	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
9._GU_168_/H___	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
10._GU_168_/H___	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
11._GU_168_/H___	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
12._GU_168_/H___	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
13._GU_168_/H___	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
14._GU_168_/H___	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
15._GU_168_/H___	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
16._GU_168_/H___	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
17._GU_168_/H___	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
18._GU_168_/H___	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
19._GU_168_/H___	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
20._GU_168_/H___	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
21._GU_168_/H___	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
22._GU_168_/H___	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
23._GU_168_/H___	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
24._GU_168_/H___	__	__	GG	__	__	__	TT	__	CC	__	GG	__	AG	__
25._GU_168_/H___	GG	GG	GG	GG	AA	AA	AA	__	__	AA	GG	GG	GG	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
1._GU_168_/H___	AA	CC	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
2._GU_168_/H___	__	__	__	CC	GG	GG	__	CC	CC	CC	GG	CC	AA	AG
3._GU_168_/H___	AA	GG	CC	CC	GG	GG	AG	CC	CC	CC	GG	CC	AA	GG
4._GU_168_/H___	AA	GG	CC	CC	GG	GG	AG	CC	CC	CC	GG	CC	AA	GG
5._GU_168_/H___	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	AG
6._GU_168_/H___	AA	GG	CC	CC	GG	GG	AG	CC	CC	CC	GG	CC	AA	GG
7._GU_168_/H___	AA	GG	CC	CC	GG	GG	AG	CC	CC	CC	GG	CC	AA	GG
8._GU_168_/H___	AA	GG	CC	CC	GG	GG	AG	CC	CC	CC	GG	CC	AA	GG
9._GU_168_/H___	AA	GG	CC	CC	GG	GG	AG	CC	CC	CC	GG	CC	AA	GG
10._GU_168_/H___	AA	GG	CC	CC	GG	GG	AG	CC	CC	CC	GG	CC	AA	GG
11._GU_168_/H___	AA	GG	CC	CC	GG	GG	AG	CC	CC	CC	GG	CC	AA	GG
12._GU_168_/H___	AA	GG	CC	CC	GG	GG	AG	CC	CC	CC	GG	CC	AA	GG
13._GU_168_/H___	AA	GG	CC	CC	GG	GG	AG	CC	CC	CC	GG	CC	AA	GG
14._GU_168_/H___	AA	GG	CC	CC	GG	GG	AG	CC	CC	CC	GG	CC	AA	GG
15._GU_168_/H___	AA	GG	CC	CC	GG	GG	AG	CC	CC	CC	GG	CC	AA	GG
16._GU_168_/H___	AA	GG	CC	CC	GG	GG	AG	CC	CC	CC	GG	CC	AA	GG
17._GU_168_/H___	AA	GG	CC	CC	GG	GG	AG	CC	CC	CC	GG	CC	AA	GG
18._GU_168_/H___	AA	GG	CC	CC	GG	GG	AG	CC	CC	CC	GG	CC	AA	GG
19._GU_168_/H___	AA	GG	CC	CC	GG	GG	AG	CC	CC	CC	GG	CC	AA	GG
20._GU_168_/H___	AA	GG	CC	CC	GG	GG	AG	CC	CC	CC	GG	CC	AA	GG
21._GU_168_/H___	AA	GG	CC	CC	GG	GG	AG	CC	CC	CC	GG	CC	AA	GG
22._GU_168_/H___	AA	GG	CC	CC	GG	GG	AG	CC	CC	__	GG	CC	AA	GG
23._GU_168_/H___	AA	GG	CC	CC	GG	GG	AG	CC	CC	__	GG	CC	AA	GG
24._GU_168_/H___	__	__	__	__	GG	GG	AA	__	CC	CC	__	__	AA	__
25._GU_168_/H___	AA	GG	GG	GG	CC	CC	__	GG	CC	CC	CC	__	AA	__

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	CC	AA	CC	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X
1._GU_168_/H___	GG	AA	CC	AA	CC	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X
2._GU_168_/H___	__	AA	CC	GG	CC	AA	TT	TT	AA	__	__	X_X	X_X	X_X
3._GU_168_/H___	GG	AA	CC	GG	CC	AA	__	TT	AA	TT	GG	X_X	X_X	X_X
4._GU_168_/H___	GG	AA	CC	GG	CC	AA	__	TT	AA	TT	GG	X_X	X_X	X_X
5._GU_168_/H___	AG	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X	X_X
6._GU_168_/H___	GG	AA	CC	GG	CC	AA	TT	TT	__	TT	GG	X_X	X_X	X_X
7._GU_168_/H___	GG	AA	CC	GG	CC	AA	TT	TT	__	TT	GG	X_X	X_X	X_X
8._GU_168_/H___	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
9._GU_168_/H___	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
10._GU_168_/H___	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
11._GU_168_/H___	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
12._GU_168_/H___	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
13._GU_168_/H___	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
14._GU_168_/H___	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
15._GU_168_/H___	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
16._GU_168_/H___	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
17._GU_168_/H___	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
18._GU_168_/H___	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
19._GU_168_/H___	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
20._GU_168_/H___	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
21._GU_168_/H___	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
22._GU_168_/H___	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
23._GU_168_/H___	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
24._GU_168_/H___	__	__	__	GG	__	__	__	__	AA	__	__	X_X	X_X	X_X
25._GU_168_/H___	GG	AA	GG	GG	GG	AA	AA	AA	AA	TT	GG	X_X	X_X	X_X

Input profile: GU_168_/H

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3212 16

Dapeng Zhang, 2016

1._GU_168_/H GC-03-023-2-12

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

2._GU_168_/H RUQ_223

64.6 %
24 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._GU_168_/H

56.6 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3212 7 > FP

Dapeng Zhang, 2016

4._GU_168_/H GC-03-023-2-12

56.6 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP3

5._GU_168_/H RUQ_223

56.4 %
39 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

6._GU_168_/H GC-03-023-2-12

55.3 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

7._GU_168_/H

55.3 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3212 3

Dapeng Zhang, 2016

8._GU_168_/H GC-03-023-2-12

55.1 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

9._GU_168_/H GC-03-023-2-12

55.1 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

10._GU_168_/H GC-03-023-2-12

55.1 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP1

11._GU_168_/H GC-03-023-2-12

55.1 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

12._GU_168_/H GC-03-023-2-12

55.1 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

13._GU_168_/H GC-03-023-2-12

55.1 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

14._GU_168_/H GC-03-023-2-12

55.1 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP4

15._GU_168_/H

55.1 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3212 2

Dapeng Zhang, 2016

16._GU_168_/H

55.1 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3212 4

Dapeng Zhang, 2016

17._GU_168_/H

55.1 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3212 6

Dapeng Zhang, 2016

18._GU_168_/H

55.1 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3212 13

Dapeng Zhang, 2016

19._GU_168_/H

55.1 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3212 15

Dapeng Zhang, 2016

20._GU_168_/H

55.1 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3212 1 > FP

Dapeng Zhang, 2016

21._GU_168_/H

55.1 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3212 10 > F

Dapeng Zhang, 2016

22._GU_168_/H GC-03-023-2-12

53.9 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP3

23._GU_168_/H

53.9 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3212 12 > F

Dapeng Zhang, 2016

24._GU_168_/H RUQ_223

53.8 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

GU
0.997

25._GU_168_/H GC-03-23-2-12

33.8 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 3, Block: 2, Rep: 12, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25