SNP Profiles of GU 239H View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	GG	CT	TT	CT	GG	CT	CT	AT	AG	CT	AA	CT
1._GU_239_/H	CT	AG	GG	CT	TT	CT	GG	CT	CT	AT	AG	CT	AA	CT
2._GC-01-079-4-15	CT	AG	GG	CT	TT	CT	GG	CT	CT	AT	AG	CT	AA	CT
3._GC-01-079-4-15	CT	AG	GG	CT	TT	CT	GG	CT	CT	AT	AG	CT	AA	CT
4._GC-01-079-4-15	CT	AG	GG	CT	TT	CT	GG	CT	CT	AT	AG	CT	AA	CT
5._GC-01-079-4-15	CT	AG	GG	CT	TT	CT	GG	CT	CT	AT	AG	CT	AA	CT
6._GC-01-079-4-15	CT	AG	GG	CT	TT	CT	GG	CT	CT	AT	AG	CT	AA	CT
7._GC-01-079-4-15	CT	AG	GG	CT	TT	CT	GG	CT	CT	AT	AG	CT	AA	CT
8._GC-01-079-4-15	CT	AG	GG	CT	TT	CT	GG	CT	CT	AT	AG	CT	AA	CT
9._GU_239_/H	CT	AG	GG	CT	TT	CT	GG	CT	CT	AT	AG	CT	AA	CT
10._GU_239_/H	CT	AG	GG	CT	TT	CT	GG	CT	CT	AT	AG	CT	AA	CT
11._GU_239_/H	CT	AG	GG	CT	TT	CT	GG	CT	CT	AT	AG	CT	AA	CT
12._GU_239_/H	CT	AG	GG	CT	TT	CT	GG	CT	CT	AT	AG	CT	AA	CT
13._GU_239_/H	CT	AG	GG	CT	TT	CT	GG	CT	CT	AT	AG	CT	AA	CT
14._RUQ_227	CT	AG	GG	CT	TT	CT	GG	CT	CT	AT	AG	CT	AA	CT
15._GC-01-079-4-15	CT	AG	GG	CT	TT	CT	GG	CT	CT	AT	AG	CT	AA	CT
16._GU_239_/H	CT	AG	GG	CT	TT	CT	GG	CT	CT	AT	AG	CT	AA	CT
17._RUQ_227	_	AG	GG	CT	_	_	GG	_	_	_	_	CT	AA	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CG	TT	CT	CC	GG	GG	TT	CC	CG	GT	CT	AC	AA
1._GU_239_/H	AA	CG	TT	CT	CC	GG	GG	TT	CC	CG	GT	CT	AC	AA
2._GC-01-079-4-15	AA	CG	TT	CT	CC	GG	GG	TT	CC	CG	GT	CT	AC	AA
3._GC-01-079-4-15	AA	CG	TT	CT	CC	GG	GG	TT	CC	CG	GT	CT	AC	AA
4._GC-01-079-4-15	AA	CG	TT	CT	CC	GG	GG	TT	CC	CG	GT	CT	AC	AA
5._GC-01-079-4-15	AA	CG	TT	CT	CC	GG	GG	TT	CC	CG	GT	CT	AC	AA
6._GC-01-079-4-15	AA	CG	TT	CT	CC	GG	GG	TT	CC	CG	GT	CT	AC	AA
7._GC-01-079-4-15	AA	CG	TT	CT	CC	GG	GG	TT	CC	CG	GT	CT	AC	AA
8._GC-01-079-4-15	AA	CG	TT	CT	CC	GG	GG	TT	CC	CG	GT	CT	AC	AA
9._GU_239_/H	AA	CG	TT	CT	CC	GG	GG	TT	CC	CG	GT	CT	AC	AA
10._GU_239_/H	AA	CG	TT	CT	CC	GG	GG	TT	CC	CG	GT	CT	AC	AA
11._GU_239_/H	AA	CG	TT	CT	CC	GG	GG	TT	CC	CG	GT	CT	AC	AA
12._GU_239_/H	AA	CG	TT	CT	CC	GG	GG	TT	CC	CG	GT	CT	AC	AA
13._GU_239_/H	AA	CG	TT	CT	CC	GG	GG	TT	CC	CG	GT	CT	AC	AA
14._RUQ_227	AA	CG	TT	CT	CC	GG	GG	TT	CC	CG	GT	CT	AC	AA
15._GC-01-079-4-15	AA	CG	TT	CT	CC	GG	GG	TT	CC	CG	GT	CT	AC	AA
16._GU_239_/H	AA	CG	TT	CT	CC	GG	GG	TT	CC	CG	GT	CT	AC	AA
17._RUQ_227	_	_	_	CT	CC	GG	_	TT	CC	CG	GT	CT	AC	AA

	29	30	31	32	33	34	35	36	37	38
_Input profile	AG	AT	CC	GG	CC	AC	CT	TT	AA	GG	X_X	X_X	X_X	X_X
1._GU_239_/H	AG	AT	CC	GG	CC	AC	CT	TT	AA	GG	X_X	X_X	X_X	X_X
2._GC-01-079-4-15	AG	AT	CC	GG	CC	AC	CT	TT	AA	GG	X_X	X_X	X_X	X_X
3._GC-01-079-4-15	AG	AT	CC	GG	CC	AC	CT	TT	AA	GG	X_X	X_X	X_X	X_X
4._GC-01-079-4-15	AG	AT	CC	GG	CC	AC	CT	TT	AA	GG	X_X	X_X	X_X	X_X
5._GC-01-079-4-15	AG	AT	CC	GG	CC	AC	CT	TT	AA	GG	X_X	X_X	X_X	X_X
6._GC-01-079-4-15	AG	AT	CC	GG	CC	AC	CT	TT	AA	GG	X_X	X_X	X_X	X_X
7._GC-01-079-4-15	AG	AT	CC	GG	CC	AC	CT	TT	AA	GG	X_X	X_X	X_X	X_X
8._GC-01-079-4-15	AG	AT	CC	GG	CC	AC	CT	TT	AA	GG	X_X	X_X	X_X	X_X
9._GU_239_/H	AG	AT	CC	GG	CC	AC	CT	TT	AA	GG	X_X	X_X	X_X	X_X
10._GU_239_/H	AG	AT	CC	GG	CC	AC	CT	TT	AA	GG	X_X	X_X	X_X	X_X
11._GU_239_/H	AG	AT	CC	GG	CC	AC	CT	TT	AA	GG	X_X	X_X	X_X	X_X
12._GU_239_/H	AG	AT	CC	GG	CC	AC	CT	TT	AA	GG	X_X	X_X	X_X	X_X
13._GU_239_/H	AG	AT	CC	GG	CC	AC	CT	TT	AA	GG	X_X	X_X	X_X	X_X
14._RUQ_227	AG	AT	CC	GG	CC	AC	CT	TT	AA	GG	X_X	X_X	X_X	X_X
15._GC-01-079-4-15	AG	AT	CC	GG	CC	_	CT	TT	AA	GG	X_X	X_X	X_X	X_X
16._GU_239_/H	AG	AT	CC	GG	CC	_	CT	TT	AA	GG	X_X	X_X	X_X	X_X
17._RUQ_227	_	AT	CC	GG	CC	AC	CT	TT	AA	_	X_X	X_X	X_X	X_X

Input profile: GU_239_/H

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1415 6

Dapeng Zhang, 2016

1._GU_239_/H

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1415 2 > FP

Dapeng Zhang, 2016

2._GU_239_/H GC-01-079-4-15

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

3._GU_239_/H GC-01-079-4-15

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

4._GU_239_/H GC-01-079-4-15

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP3

5._GU_239_/H GC-01-079-4-15

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

6._GU_239_/H GC-01-079-4-15

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

7._GU_239_/H GC-01-079-4-15

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

8._GU_239_/H GC-01-079-4-15

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

9._GU_239_/H

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1415 5

Dapeng Zhang, 2016

10._GU_239_/H

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1415 7

Dapeng Zhang, 2016

11._GU_239_/H

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1415 10

Dapeng Zhang, 2016

12._GU_239_/H

identical
38 shared markers

Reference View View all Any

Mars Center for Cocoa Science, Brazil

Location: 1415 11

Dapeng Zhang, 2016

13._GU_239_/H

identical
38 shared markers

Verified View View all Any

Mars Center for Cocoa Science, Brazil

Location: 1415 9 > FP

Dapeng Zhang, 2016

14._GU_239_/H RUQ_227

identical
38 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

15._GU_239_/H GC-01-079-4-15

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

16._GU_239_/H

identical
37 shared markers

Verified View View all Any

Mars Center for Cocoa Science, Brazil

Location: 1415 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

17._GU_239_/H RUQ_227

identical
24 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP25