SNP Profiles of HUALLAGA 15 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
1._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
2._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
3._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
4._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
5._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
6._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
7._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
8._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
9._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
10._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
11._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
12._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
13._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
14._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
15._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
16._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
17._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
18._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
19._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
20._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
21._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
22._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
23._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
24._HUALLAGA_15	CC	AG	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
1._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
2._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
3._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
4._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
5._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
6._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
7._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
8._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
9._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
10._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
11._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
12._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
13._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
14._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
15._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
16._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
17._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
18._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
19._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
20._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
21._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
22._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
23._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
24._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
1._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
2._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
3._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
4._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
5._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
6._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
7._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
8._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
9._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
10._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
11._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
12._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
13._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
14._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
15._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
16._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
17._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
18._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
19._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
20._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
21._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
22._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
23._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
24._HUALLAGA_15	AG	AA	CC	AG	CG	AC	CT	GG	CC	TT	GG	X_X	X_X	X_X

Input profile: HUALLAGA_15

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Mars Center for Cocoa Science, Brazil

Location: 1202 5

Dapeng Zhang, 2016

1._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

2._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

3._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

4._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

5._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

6._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

7._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP4

8._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP3

9._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

10._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

11._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

12._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

13._HUALLAGA_15

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1202 8 > FP

Dapeng Zhang, 2016

14._HUALLAGA_15

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1202 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

15._HUALLAGA_15

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1202 3

Dapeng Zhang, 2016

16._HUALLAGA_15

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1202 9

Dapeng Zhang, 2016

17._HUALLAGA_15

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1202 10

Dapeng Zhang, 2016

18._HUALLAGA_15

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1202 11

Dapeng Zhang, 2016

19._HUALLAGA_15

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1202 12

Dapeng Zhang, 2016

20._HUALLAGA_15

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1202 14

Dapeng Zhang, 2016

21._HUALLAGA_15

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1202 1 > FP

Dapeng Zhang, 2016

22._HUALLAGA_15

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1202 4 > FP

Dapeng Zhang, 2016

23._HUALLAGA_15

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1202 6 > FP

Dapeng Zhang, 2016

24._HUALLAGA_15

97.4 %
39 shared markers

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PERICT

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25