SNP Profiles of HUALLAGA 56 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	GG	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA	CT
1._HUALLAGA_56	CC	AA	GG	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA	CT
2._GC-07-022-1-24	CC	AA	GG	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA	CT
3._GC-01-030-2-07	CC	AA	GG	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA	CT
4._GC-01-030-2-07	CC	AA	GG	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA	CT
5._GC-01-030-2-07	CC	AA	GG	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA	CT
6._GC-01-030-2-07	CC	AA	GG	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA	CT
7._GC-01-030-2-07	CC	AA	GG	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA	CT
8._GC-01-030-2-07	CC	AA	GG	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA	CT
9._HUALLAGA_56	CC	AA	GG	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA	CT
10._HUALLAGA_56	CC	AA	GG	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA	CT
11._HUALLAGA_56	CC	AA	GG	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA	CT
12._HUALLAGA_56	CC	AA	GG	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA	CT
13._HUALLAGA_56	CC	AA	GG	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA	CT
14._HUALLAGA_56	CC	AA	GG	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA	CT
15._GC-01-030-2-07	CC	AA	GG	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA	CT
16._HUALLAGA_56	CC	AA	GG	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA	CT
17._HUALLAGA_56	CC	AG	GG	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA	CT
18._GC-01-030-2-07	CC	AA	CG	TT	CC	TT	GG	CT	CC	AT	GG	CC	AA	CT
19._HUALLAGA_56	CC	AA	CG	TT	CC	TT	GG	CT	CC	AT	GG	CC	AA	CT
20._HUALLAGA_56	CC	AA	CG	TT	CC	TT	GG	CT	CC	AT	GG	CC	AA	CT
21._HUALLAGA_56	CC	AA	CG	TT	CC	TT	GG	CT	CC	AT	GG	CC	AA	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA	GG
1._HUALLAGA_56	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA	GG
2._GC-07-022-1-24	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA	GG
3._GC-01-030-2-07	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA	GG
4._GC-01-030-2-07	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA	GG
5._GC-01-030-2-07	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA	GG
6._GC-01-030-2-07	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA	GG
7._GC-01-030-2-07	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA	GG
8._GC-01-030-2-07	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA	GG
9._HUALLAGA_56	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA	GG
10._HUALLAGA_56	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA	GG
11._HUALLAGA_56	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA	GG
12._HUALLAGA_56	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA	GG
13._HUALLAGA_56	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA	GG
14._HUALLAGA_56	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA	GG
15._GC-01-030-2-07	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA	GG
16._HUALLAGA_56	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA	GG
17._HUALLAGA_56	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA	GG
18._GC-01-030-2-07	AT	CG	CC	CT	CC	GG	AA	CT	CC	GT	CC	AA	AG	GG
19._HUALLAGA_56	AT	CG	CC	CT	CC	GG	AA	CT	CC	GT	CC	AA	AG	GG
20._HUALLAGA_56	AT	CG	CC	CT	CC	GG	AA	CT	CC	GT	CC	AA	AG	GG
21._HUALLAGA_56	AT	CG	CC	CT	CC	GG	AA	CT	CC	GT	CC	AA	AG	GG

	29	30	31	32	33	34	35	36	37	38
_Input profile	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
1._HUALLAGA_56	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
2._GC-07-022-1-24	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
3._GC-01-030-2-07	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
4._GC-01-030-2-07	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
5._GC-01-030-2-07	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
6._GC-01-030-2-07	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
7._GC-01-030-2-07	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
8._GC-01-030-2-07	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
9._HUALLAGA_56	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
10._HUALLAGA_56	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
11._HUALLAGA_56	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
12._HUALLAGA_56	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
13._HUALLAGA_56	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
14._HUALLAGA_56	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
15._GC-01-030-2-07	AA	CT	AG	CG	_	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
16._HUALLAGA_56	AA	CT	AG	CG	_	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
17._HUALLAGA_56	AA	TT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
18._GC-01-030-2-07	AA	CT	AG	CG	CC	CT	GG	CC	AT	CG	X_X	X_X	X_X	X_X
19._HUALLAGA_56	AA	CT	AG	CG	CC	CT	GG	CC	AT	CG	X_X	X_X	X_X	X_X
20._HUALLAGA_56	AA	CT	AG	CG	CC	CT	GG	CC	AT	CG	X_X	X_X	X_X	X_X
21._HUALLAGA_56	AA	CT	AG	CG	CC	CT	GG	CC	AT	CG	X_X	X_X	X_X	X_X

Input profile: HUALLAGA_56

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1207 1 > FP

Dapeng Zhang, 2016

1._HUALLAGA_56

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1207 8

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._HUALLAGA_56 GC-07-022-1-24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

3._HUALLAGA_56 GC-01-030-2-07

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

4._HUALLAGA_56 GC-01-030-2-07

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13 > FP2

5._HUALLAGA_56 GC-01-030-2-07

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

6._HUALLAGA_56 GC-01-030-2-07

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

7._HUALLAGA_56 GC-01-030-2-07

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

8._HUALLAGA_56 GC-01-030-2-07

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

9._HUALLAGA_56

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1207 9

Dapeng Zhang, 2016

10._HUALLAGA_56

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1207 10

Dapeng Zhang, 2016

11._HUALLAGA_56

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1207 14

Dapeng Zhang, 2016

12._HUALLAGA_56

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1207 13 > F

Dapeng Zhang, 2016

13._HUALLAGA_56

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7124 1 > FP

Dapeng Zhang, 2016

14._HUALLAGA_56

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7124 4 > FP

Dapeng Zhang, 2016

15._HUALLAGA_56 GC-01-030-2-07

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

16._HUALLAGA_56

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1207 15

Dapeng Zhang, 2016

17._HUALLAGA_56

97.4 %
38 shared markers

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PERICT

Dapeng Zhang, 2016

18._HUALLAGA_56 GC-01-030-2-07

73.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

19._HUALLAGA_56

73.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7124 3 > FP

Dapeng Zhang, 2016

20._HUALLAGA_56

73.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1207 16

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

21._HUALLAGA_56

73.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7124 2 > FP

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1350
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP560	25	TcSNP534
26	TcSNP529	27	TcSNP469	28	TcSNP429	29	TcSNP372	30	TcSNP242
31	TcSNP230	32	TcSNP226	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25