SNP Profiles of HUALLAGA 56 View Data

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_Input profile	CC	AA	CG	TT	CC	CC	TT	GG	CT	CC	AT	GG	CC	AA
1._GC-01-030-2-07	CC	AA	CG	TT	CC	CC	TT	GG	CT	CC	AT	GG	CC	AA
2._HUALLAGA_56	CC	AA	CG	TT	CC	CC	TT	GG	CT	CC	AT	GG	CC	AA
3._HUALLAGA_56	CC	AA	CG	TT	CC	CC	TT	GG	CT	CC	AT	GG	CC	AA
4._GC-01-030-2-07	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
5._GC-01-030-2-07	CC	AA	GG	TT	_	CC	TT	GT	CC	CC	AT	GG	CC	AA
6._HUALLAGA_56	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
7._HUALLAGA_56	CC	AA	GG	TT	_	CC	TT	GT	CC	CC	AT	GG	CC	AA
8._HUALLAGA_56	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
9._GC-07-022-1-24	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
10._GC-01-030-2-07	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
11._GC-01-030-2-07	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
12._GC-01-030-2-07	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
13._GC-01-030-2-07	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
14._GC-01-030-2-07	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
15._HUALLAGA_56	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
16._HUALLAGA_56	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
17._HUALLAGA_56	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
18._HUALLAGA_56	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
19._HUALLAGA_56	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
20._HUALLAGA_56	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
21._HUALLAGA_56	CC	AG	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AT	CG	CC	CT	CC	GG	AA	CT	CC	CG	GT	CC	AA
1._GC-01-030-2-07	CT	AT	CG	CC	CT	CC	GG	AA	CT	CC	CG	GT	CC	AA
2._HUALLAGA_56	CT	AT	CG	CC	CT	CC	GG	AA	CT	CC	CG	GT	CC	AA
3._HUALLAGA_56	CT	AT	CG	CC	CT	CC	GG	AA	CT	CC	CG	GT	CC	AA
4._GC-01-030-2-07	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	_	GG	CC	AC
5._GC-01-030-2-07	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	_	GG	CC	AC
6._HUALLAGA_56	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	_	GG	CC	AC
7._HUALLAGA_56	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	_	GG	CC	AC
8._HUALLAGA_56	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	_	GG	CC	AC
9._GC-07-022-1-24	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	_	GG	CC	AC
10._GC-01-030-2-07	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	_	GG	CC	AC
11._GC-01-030-2-07	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	_	GG	CC	AC
12._GC-01-030-2-07	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	_	GG	CC	AC
13._GC-01-030-2-07	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	_	GG	CC	AC
14._GC-01-030-2-07	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	_	GG	CC	AC
15._HUALLAGA_56	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	_	GG	CC	AC
16._HUALLAGA_56	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	_	GG	CC	AC
17._HUALLAGA_56	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	_	GG	CC	AC
18._HUALLAGA_56	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	_	GG	CC	AC
19._HUALLAGA_56	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	_	GG	CC	AC
20._HUALLAGA_56	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	_	GG	CC	AC
21._HUALLAGA_56	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	CC	GG	CC	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AA	CT	AG	CG	CC	CT	GG	CC	AT	CG	X_X	X_X
1._GC-01-030-2-07	AG	GG	AA	CT	AG	CG	CC	CT	GG	CC	AT	CG	X_X	X_X
2._HUALLAGA_56	AG	GG	AA	CT	AG	CG	CC	CT	GG	CC	AT	CG	X_X	X_X
3._HUALLAGA_56	AG	GG	AA	CT	AG	CG	CC	CT	GG	CC	AT	CG	X_X	X_X
4._GC-01-030-2-07	AA	GG	AA	CT	AG	CG	_	CC	GG	CC	TT	GG	X_X	X_X
5._GC-01-030-2-07	AA	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
6._HUALLAGA_56	AA	GG	AA	CT	AG	CG	_	CC	GG	CC	TT	GG	X_X	X_X
7._HUALLAGA_56	AA	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
8._HUALLAGA_56	AA	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
9._GC-07-022-1-24	AA	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
10._GC-01-030-2-07	AA	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
11._GC-01-030-2-07	AA	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
12._GC-01-030-2-07	AA	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
13._GC-01-030-2-07	AA	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
14._GC-01-030-2-07	AA	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
15._HUALLAGA_56	AA	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
16._HUALLAGA_56	AA	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
17._HUALLAGA_56	AA	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
18._HUALLAGA_56	AA	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
19._HUALLAGA_56	AA	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
20._HUALLAGA_56	AA	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
21._HUALLAGA_56	AA	GG	AA	TT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X

Input profile: HUALLAGA_56

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Mars Center for Cocoa Science, Brazil

Location: 7124 3 > FP

Dapeng Zhang, 2016

1._HUALLAGA_56 GC-01-030-2-07

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

2._HUALLAGA_56

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7124 2 > FP

Dapeng Zhang, 2016

3._HUALLAGA_56

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1207 16

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._HUALLAGA_56 GC-01-030-2-07

73.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

5._HUALLAGA_56 GC-01-030-2-07

73.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

6._HUALLAGA_56

73.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1207 15

Dapeng Zhang, 2016

7._HUALLAGA_56

73.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1207 1 > FP

Dapeng Zhang, 2016

8._HUALLAGA_56

71.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1207 8

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._HUALLAGA_56 GC-07-022-1-24

71.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._HUALLAGA_56 GC-01-030-2-07

71.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

11._HUALLAGA_56 GC-01-030-2-07

71.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13 > FP2

12._HUALLAGA_56 GC-01-030-2-07

71.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

13._HUALLAGA_56 GC-01-030-2-07

71.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

14._HUALLAGA_56 GC-01-030-2-07

71.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

15._HUALLAGA_56

71.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1207 9

Dapeng Zhang, 2016

16._HUALLAGA_56

71.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1207 10

Dapeng Zhang, 2016

17._HUALLAGA_56

71.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1207 14

Dapeng Zhang, 2016

18._HUALLAGA_56

71.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1207 13 > F

Dapeng Zhang, 2016

19._HUALLAGA_56

71.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7124 1 > FP

Dapeng Zhang, 2016

20._HUALLAGA_56

71.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7124 4 > FP

Dapeng Zhang, 2016

21._HUALLAGA_56

68.8 %
40 shared markers

View View all Clone Any

PERICT

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25