SNP Profiles of OC 61 [VEN] View Data

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_Input profile	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
1._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
2._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
3._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
4._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
5._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
6._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
7._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
8._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
9._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
10._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
11._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
12._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
13._ICS_1___	TT	AG	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
14._ICS_1___	__	AA	GG	CT	__	__	__	TT	__	__	__	__	TT	AG
15._ICS_1___	__	__	GG	__	__	__	__	TT	__	TT	__	AA	__	AG
16._ICS_1___	__	__	GG	__	__	__	__	TT	__	TT	__	AA	__	AG
17._ICS_1___	TT	AG	GG	CT	TT	AA	CC	TT	CT	CT	AA	AA	TT	AG
18._ICS_1___	__	__	CC	__	__	__	__	__	__	__	__	__	TT	__
19._ICS_1___	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
20._ICS_1___	__	__	CG	__	__	__	__	__	__	__	__	__	CC	__
21._ICS_1___	AA	AA	CC	AG	AA	AA	GG	AA	__	__	AA	AA	AA	AG
22._ICS_1___	AA	AA	CC	AG	AA	AA	GG	AA	__	__	AA	AA	AA	AG
23._ICS_1___	AA	AA	CC	AG	AA	AA	GG	AA	__	__	AA	AA	AA	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
1._ICS_1___	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
2._ICS_1___	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
3._ICS_1___	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
4._ICS_1___	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
5._ICS_1___	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
6._ICS_1___	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
7._ICS_1___	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
8._ICS_1___	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
9._ICS_1___	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
10._ICS_1___	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
11._ICS_1___	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
12._ICS_1___	TT	AA	GG	TT	CC	__	GT	GG	TT	AC	TT	TT	CC	__
13._ICS_1___	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
14._ICS_1___	__	__	__	__	CC	CG	GT	__	TT	AA	TT	TT	CC	AG
15._ICS_1___	__	__	__	__	__	CG	GT	GG	__	AC	__	__	AC	__
16._ICS_1___	__	__	__	__	__	CG	GT	GG	__	AC	__	__	AC	__
17._ICS_1___	TT	AA	GG	TT	CC	CG	GT	GG	CT	AC	TT	CT	CC	AG
18._ICS_1___	TT	__	__	__	CC	CG	__	__	__	AC	__	__	__	__
19._ICS_1___	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	GG	CT	AA	AG
20._ICS_1___	CT	__	__	__	CT	CG	__	__	__	CC	__	__	__	__
21._ICS_1___	AA	AA	GG	AA	GG	CG	AC	__	AA	AC	AA	__	CC	__
22._ICS_1___	AA	AA	GG	AA	GG	CG	AC	__	AA	AC	AA	__	CC	__
23._ICS_1___	AA	AA	GG	AA	GG	CG	AC	__	AA	AC	AA	__	CC	__

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
1._ICS_1___	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
2._ICS_1___	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
3._ICS_1___	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
4._ICS_1___	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
5._ICS_1___	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
6._ICS_1___	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
7._ICS_1___	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
8._ICS_1___	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
9._ICS_1___	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
10._ICS_1___	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
11._ICS_1___	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
12._ICS_1___	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
13._ICS_1___	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
14._ICS_1___	__	AT	CT	AG	CG	AA	CC	GT	AA	__	__	X_X	X_X	X_X
15._ICS_1___	__	__	__	AG	__	__	__	__	AA	__	__	X_X	X_X	X_X
16._ICS_1___	__	__	__	AG	__	__	__	__	AA	__	__	X_X	X_X	X_X
17._ICS_1___	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
18._ICS_1___	__	AT	__	AG	CG	AA	CC	__	AA	__	__	X_X	X_X	X_X
19._ICS_1___	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X	X_X
20._ICS_1___	__	TT	__	AG	CG	AC	CT	__	CC	__	__	X_X	X_X	X_X
21._ICS_1___	GG	AT	AG	AG	CG	AA	GG	AC	AA	AT	GG	X_X	X_X	X_X
22._ICS_1___	GG	AT	AG	AG	CG	AA	GG	AC	AA	AT	GG	X_X	X_X	X_X
23._ICS_1___	GG	AT	AG	AG	CG	AA	GG	AC	AA	AT	GG	X_X	X_X	X_X

Input profile: ICS_1

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Mars Center for Cocoa Science, Brazil

Location: 8903 7

Dapeng Zhang, 2016

1._ICS_1 NA

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

2._ICS_1

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 8

Dapeng Zhang, 2016

3._ICS_1

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 6

Dapeng Zhang, 2016

4._ICS_1

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 5

Dapeng Zhang, 2016

5._ICS_1

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 3

Dapeng Zhang, 2016

6._ICS_1

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 1

Dapeng Zhang, 2016

7._ICS_1 NA

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

8._ICS_1 NA

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

9._ICS_1 NA

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

10._ICS_1 NA

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

11._ICS_1 NA

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

12._ICS_1

identical
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block4

Dapeng Zhang, 2016

13._ICS_1 RUQ_847

98.7 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

14._ICS_1 RUQ_847

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

15._ICS_1 RUQ_847B

95.8 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

16._ICS_1 RUQ_847

95.8 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.578 Cri
0.416

17._ICS_1 RUQ_847

94.9 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

18._ICS_1 RUQ_847

91.7 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

19._ICS_1

62.8 %
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

20._ICS_1 ICS1

54.2 %
12 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

21._ICS_1 RUQ_847

52.9 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

22._ICS_1 MITC-000297

52.9 %
34 shared markers

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USDA-SHRS, United States of America

23._ICS_1 ICS_1_Fld#_73_Plt#_2

52.9 %
34 shared markers

View View all Clone Any

USDA-TARS, United States of America

Location: Field: 73, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25